View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_high_30 (Length: 235)
Name: NF16797_high_30
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_high_30 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 27659409 - 27659636
Alignment:
| Q |
2 |
tgcttaaattatatttaatgtttttgtttgtgatgcttacatttt-ttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27659409 |
tgcttaaattatatttaatgtttttgtttgtgatgcttacatttttttctgatgttttagctgcattatatttgatgcaataagcttgtaaatcaccatg |
27659508 |
T |
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| Q |
101 |
tttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgct |
200 |
Q |
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| T |
27659509 |
tttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgtggatagttcaaatgct |
27659608 |
T |
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| Q |
201 |
gttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
27659609 |
gttttggattgtggtagtattgatgatg |
27659636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37604667 - 37604440
Alignment:
| Q |
1 |
atgcttaaattatatttaatgtttttgtttgtgatgcttacattttttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactatg |
100 |
Q |
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| T |
37604667 |
atgcttaaattatatttaatgtttttgtttgtgatgcttacgttgtttctgatgtttttgctacattatatttgatgcaataagcttgtaaatcactatg |
37604568 |
T |
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| Q |
101 |
tttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgct |
200 |
Q |
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| T |
37604567 |
tttgcaatataacttattattgatctaattaagtaattttgtgcagttttggtgtgccaatttcacccacaattgaaaatttatggatagttcaaatgtt |
37604468 |
T |
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| Q |
201 |
gttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
37604467 |
cttgtggattgtggtagtattgatgatg |
37604440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
68 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
153 |
Q |
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| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
129 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
129 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
129 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
129 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
228 |
Q |
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| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
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