View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_high_6 (Length: 500)

Name: NF16797_high_6
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_high_6
NF16797_high_6
[»] chr2 (16 HSPs)
chr2 (1-480)||(41545939-41546418)
chr2 (235-399)||(42579650-42579814)
chr2 (209-337)||(23463880-23464009)
chr2 (231-337)||(9470100-9470206)
chr2 (212-335)||(42182889-42183013)
chr2 (207-398)||(26767756-26767946)
chr2 (207-294)||(45554562-45554650)
chr2 (25-104)||(29926860-29926939)
chr2 (208-333)||(4964731-4964857)
chr2 (213-314)||(6980197-6980299)
chr2 (271-337)||(24895321-24895387)
chr2 (231-284)||(25666700-25666754)
chr2 (206-335)||(28898093-28898223)
chr2 (230-286)||(3804602-3804659)
chr2 (227-295)||(43400148-43400217)
chr2 (210-337)||(38464161-38464288)
[»] chr4 (26 HSPs)
chr4 (242-398)||(19447161-19447317)
chr4 (240-337)||(25719167-25719265)
chr4 (31-208)||(46217076-46217253)
chr4 (275-400)||(5545642-5545766)
chr4 (213-316)||(10169720-10169822)
chr4 (210-314)||(47237818-47237923)
chr4 (271-399)||(13070000-13070127)
chr4 (271-335)||(51206103-51206167)
chr4 (213-335)||(39016664-39016787)
chr4 (31-140)||(4215104-4215212)
chr4 (49-154)||(33361002-33361107)
chr4 (271-335)||(37315620-37315684)
chr4 (25-117)||(42375192-42375284)
chr4 (271-314)||(42862498-42862541)
chr4 (87-182)||(50384465-50384560)
chr4 (207-399)||(8108951-8109142)
chr4 (68-153)||(16970876-16970961)
chr4 (129-182)||(20177557-20177610)
chr4 (225-337)||(21776899-21777012)
chr4 (227-295)||(27654492-27654561)
chr4 (85-150)||(40997807-40997872)
chr4 (271-335)||(16178643-16178707)
chr4 (112-208)||(17381426-17381522)
chr4 (275-331)||(30866992-30867048)
chr4 (31-95)||(30889000-30889064)
chr4 (25-61)||(51225898-51225934)
[»] chr3 (18 HSPs)
chr3 (209-337)||(46575945-46576074)
chr3 (207-402)||(27243040-27243235)
chr3 (227-337)||(50661576-50661687)
chr3 (227-335)||(46237102-46237211)
chr3 (207-337)||(28529248-28529376)
chr3 (271-335)||(54140949-54141013)
chr3 (209-294)||(5452157-5452243)
chr3 (209-294)||(20493542-20493628)
chr3 (209-309)||(37600212-37600313)
chr3 (271-331)||(43657056-43657116)
chr3 (225-335)||(24748966-24749077)
chr3 (26-93)||(34979159-34979226)
chr3 (213-337)||(13809083-13809207)
chr3 (25-178)||(51758530-51758683)
chr3 (25-181)||(3941706-3941862)
chr3 (271-343)||(29588782-29588853)
chr3 (207-314)||(37776780-37776888)
chr3 (25-77)||(47944548-47944600)
[»] chr5 (19 HSPs)
chr5 (209-397)||(32401114-32401302)
chr5 (37-178)||(26675167-26675308)
chr5 (37-178)||(26946775-26946916)
chr5 (313-398)||(12076057-12076141)
chr5 (86-150)||(22391809-22391873)
chr5 (208-335)||(42224647-42224775)
chr5 (87-150)||(23159185-23159248)
chr5 (206-335)||(40971509-40971639)
chr5 (31-208)||(8206088-8206265)
chr5 (271-335)||(13456221-13456285)
chr5 (25-77)||(23159084-23159136)
chr5 (32-116)||(42525247-42525331)
chr5 (32-139)||(8814045-8814152)
chr5 (26-77)||(24444395-24444446)
chr5 (25-92)||(33757580-33757647)
chr5 (25-74)||(3599850-3599899)
chr5 (27-88)||(12403285-12403346)
chr5 (31-104)||(37853425-37853498)
chr5 (271-335)||(24915115-24915179)
[»] chr1 (16 HSPs)
chr1 (209-398)||(39019572-39019752)
chr1 (209-315)||(26980338-26980445)
chr1 (207-332)||(32848642-32848768)
chr1 (68-208)||(19464313-19464453)
chr1 (206-335)||(11135733-11135863)
chr1 (207-332)||(11430436-11430562)
chr1 (25-121)||(8987220-8987316)
chr1 (209-335)||(14094057-14094184)
chr1 (25-92)||(33747324-33747391)
chr1 (27-185)||(9776859-9777016)
chr1 (271-335)||(41918055-41918119)
chr1 (31-120)||(10018924-10019010)
chr1 (261-314)||(19101678-19101732)
chr1 (227-272)||(28274801-28274846)
chr1 (89-194)||(38445025-38445130)
chr1 (25-93)||(32743313-32743381)
[»] chr8 (15 HSPs)
chr8 (25-182)||(21145529-21145686)
chr8 (261-331)||(35689529-35689600)
chr8 (255-347)||(9453505-9453598)
chr8 (271-337)||(13407378-13407444)
chr8 (25-74)||(7681012-7681061)
chr8 (86-178)||(4493110-4493202)
chr8 (212-314)||(28413946-28414049)
chr8 (213-343)||(32072098-32072228)
chr8 (251-343)||(11310414-11310507)
chr8 (137-182)||(33508583-33508628)
chr8 (271-332)||(43026351-43026412)
chr8 (242-337)||(6387591-6387687)
chr8 (132-208)||(13003031-13003106)
chr8 (25-93)||(33508665-33508733)
chr8 (209-257)||(38091488-38091536)
[»] chr6 (18 HSPs)
chr6 (25-93)||(10067704-10067772)
chr6 (25-175)||(515893-516043)
chr6 (271-333)||(10060919-10060981)
chr6 (210-350)||(6109869-6110010)
chr6 (227-335)||(35128779-35128888)
chr6 (209-332)||(19090274-19090398)
chr6 (231-337)||(34905355-34905461)
chr6 (126-181)||(21020987-21021042)
chr6 (213-343)||(32122796-32122926)
chr6 (68-178)||(23140539-23140649)
chr6 (25-78)||(921446-921499)
chr6 (209-309)||(6531380-6531481)
chr6 (230-314)||(10133235-10133320)
chr6 (203-295)||(29610333-29610426)
chr6 (271-335)||(373459-373523)
chr6 (306-350)||(6119149-6119193)
chr6 (275-335)||(12794870-12794930)
chr6 (25-93)||(28995518-28995586)
[»] scaffold0155 (1 HSPs)
scaffold0155 (247-338)||(35629-35721)
[»] chr7 (18 HSPs)
chr7 (271-335)||(13919840-13919904)
chr7 (209-335)||(17354583-17354710)
chr7 (227-337)||(24539177-24539288)
chr7 (25-121)||(23532900-23532997)
chr7 (227-337)||(46067952-46068062)
chr7 (231-314)||(7775019-7775103)
chr7 (271-335)||(19494395-19494459)
chr7 (25-121)||(23441508-23441604)
chr7 (25-121)||(23457770-23457866)
chr7 (25-121)||(23474562-23474658)
chr7 (271-335)||(45909516-45909580)
chr7 (240-337)||(17749722-17749820)
chr7 (209-314)||(31502541-31502647)
chr7 (25-93)||(5362299-5362367)
chr7 (213-265)||(7775128-7775180)
chr7 (25-77)||(10228755-10228807)
chr7 (231-286)||(11824090-11824146)
chr7 (231-314)||(22189958-22190042)
[»] scaffold0018 (1 HSPs)
scaffold0018 (261-400)||(27861-27999)
[»] scaffold0086 (1 HSPs)
scaffold0086 (25-61)||(21647-21683)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 41546418 - 41545939
Alignment:
Q  1 agttagtcatgataatccctcggagtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttc 100  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  41546418 agttagccaagataatccctcggagtatcgaaattttaaaatagtatttgattgtgtacttctttattcaaagtagtatctgatattaaaatagtttttc 41546319  T
Q  101 aatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaattaagggattaac 200  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||     
T  41546318 aatgcttacattaactcttttgacatatagactgatatgaaagtaagtaagtacatgtaaaaactaatatgataataagtaattatattaagggattaat 41546219  T
Q  201 atgacaatgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaatcaatgtatgtcccgccactttacgtga 300  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  41546218 atgacaatgaggaatgctagcatcactctcttttcaacactctctcaaacattcactctcttattggatgaatcaatatatgtcccgccactttacgtga 41546119  T
Q  301 gttccattttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactcat 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41546118 gttccattttcaaaacgtagaacccacattgatttaagtcaattagaaaagcgagtattaaatatagtgtttaaaataaagtgttgctagcactactcat 41546019  T
Q  401 atgacaatactaacaacgcattttaatgtatttgactaacataatgcataatcaatgattgttttgattttttatattta 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41546018 atgacaatactaacaacgcattttaatgtatttgactaacataatgcataatcaatgattgttttgattttttatattta 41545939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 235 - 399
Target Start/End: Complemental strand, 42579814 - 42579650
Alignment:
Q  235 caacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgat 333  Q
    |||| |||||||||||| ||||||  |||||||||||| ||||| ||| || |  ||||||||||| ||| |||||||||||||||  || || ||||||    
T  42579814 caacactctctcaaacactcactcttttattggatgaaatcaatatatatctcatcactttacgtgggtttcattttcaaaacgtataactcatattgat 42579715  T
Q  334 ttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactca 399  Q
    |||||||||||||| | | |||| ||| | | | ||||||||| ||||||||||| ||||||||||    
T  42579714 ttaagtcaattagaga-gtgagttttagaaagagtgtttaaaagaaagtgttgctggcactactca 42579650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 23464009 - 23463880
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || ||||||||||| ||  ||||||||||||||||||  |||||||  |||| ||||||||| |||||| | ||||  |||||| |||    
T  23464009 gaggaatgctagcaacattctctttttaatactctctcaaacattcactatcttattgagtgaaatcaatgtatatcccgctattttaaatgagtttcat 23463910  T
Q  308 tttcaaaacgtaggacccacattgatttaa 337  Q
    |||||||  ||| |||||||||||||||||    
T  23463909 tttcaaattgtatgacccacattgatttaa 23463880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 9470100 - 9470206
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacat 329  Q
    |||||||||||||||| |||| ||||||  |||||||||| |||||||||||||||| |||||||   || |||| |||||||||  ||| ||||||||     
T  9470100 ttttcaacgctctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgta-gacccacaa 9470198  T
Q  330 tgatttaa 337  Q
    ||||||||    
T  9470199 tgatttaa 9470206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 42182889 - 42183013
Alignment:
Q  212 gaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccatttt 310  Q
    |||||||| || || |||||||| | | ||||||| | || ||||||  ||||||| |||| |||||||||||||| |||||||| ||| |||||||||     
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttc 42182988  T
Q  311 caaaacgtaggacccacattgattt 335  Q
    ||||  ||||| || ||||||||||    
T  42182989 caaagtgtaggtcctacattgattt 42183013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 398
Target Start/End: Complemental strand, 26767946 - 26767756
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    ||||||||||||| || || || |||||||||  |||||| | || | ||||  ||| |||||||| |||||||||||||| |||||||  | | ||||     
T  26767946 atgaggaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatgaaatcaatgtatgtcccaccactttgtgagggttca 26767847  T
Q  306 attttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactc 398  Q
    |||||||||  |||| || |||| ||||||||  |||| | || || |||||||| ||| | |||| |||| ||||||||||||||| |||||    
T  26767846 attttcaaattgtag-actcacaatgatttaaaccaataa-aagagtgagtattagatagagtgttcaaaagaaagtgttgctagcattactc 26767756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 45554562 - 45554650
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccacttt 294  Q
    |||| |||||||| || || || ||||||||| ||||||| | || ||||||  |||||||||| |||||||||||||||| |||||||    
T  45554562 atgaagaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccacttt 45554650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 29926939 - 29926860
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatg 104  Q
    ||||| |||||||||||||||   |||||||| ||||| ||| |||||||||| | |||  |||||||||| ||||||||    
T  29926939 gtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaatagtctttcaatg 29926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 333
Target Start/End: Complemental strand, 4964857 - 4964731
Alignment:
Q  208 tgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcca 306  Q
    |||||||||||| || ||||||||||| |   ||||||| | || |||||   ||||||| |||| |||||||||||||| |||||||| |||  || ||    
T  4964857 tgaggaatgctagcaacattctcttttgagtactctctctagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtggatttca 4964758  T
Q  307 ttttcaaaacgtaggacccacattgat 333  Q
    ||||||||  ||||| || ||||||||    
T  4964757 ttttcaaagtgtaggtcctacattgat 4964731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 6980299 - 6980197
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    ||||||| || ||||| ||||||||| ||||||| | || ||||||  |||||||||| |||||| |||||| |  |||||||  |||||||| ||||||    
T  6980299 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatcaaggtatgttctaccactttgtgtgagttcaattttc 6980200  T
Q  312 aaa 314  Q
    |||    
T  6980199 aaa 6980197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 24895387 - 24895321
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaa 337  Q
    ||||||||||| | || ||| |||| ||||||||||||| ||||  ||| |||||||||||||||||    
T  24895387 aatcaatgtatattccaccattttatgtgagttccatttccaaagtgtatgacccacattgatttaa 24895321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 25666754 - 25666700
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtc 284  Q
    |||||||| |||||||||||||||||||  |||| ||||| ||||||||||||||    
T  25666754 ttttcaacactctctcaaacattcactcttttatcggatgaaatcaatgtatgtc 25666700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 28898223 - 28898093
Alignment:
Q  206 aatgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttc 304  Q
    |||||||||||||| || || ||| |||| | | ||||||| | || ||||||  ||||||| |||| |||||||||||||| |||||||| ||| |||     
T  28898223 aatgaggaatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttt 28898124  T
Q  305 cattttcaaaacgtaggacccacattgattt 335  Q
    ||||| ||||  ||||  || ||||||||||    
T  28898123 catttccaaagtgtagatcctacattgattt 28898093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 3804602 - 3804659
Alignment:
Q  230 cttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtccc 286  Q
    ||||||||| ||||||  |||||||||||  |||||||||| ||||||||||||||||    
T  3804602 cttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatgtccc 3804659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 43400148 - 43400217
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaatc-aatgtatgtcccgccacttta 295  Q
    |||||||||||| ||||||| |||| |||||  ||||||||||||| | | |||||||||| ||||||||    
T  43400148 tctcttttcaacactctctctaacactcactttcttattggatgaaactagtgtatgtcccaccacttta 43400217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 337
Target Start/End: Original strand, 38464161 - 38464288
Alignment:
Q  210 aggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccatt 308  Q
    ||||||||||| | ||||| ||||||||| |||||||  ||| | |||   |||||| ||| |||||||||||||| |  |||||| |||| |||| |||    
T  38464161 aggaatgctaagaacattcacttttcaacactctctctgacaattacttttttattgtatgaaatcaatgtatgtctcatcactttgcgtgggttcaatt 38464260  T
Q  309 ttcaaaacgtaggacccacattgatttaa 337  Q
    ||||||  ||| |||||||| ||||||||    
T  38464261 ttcaaagtgta-gacccacaatgatttaa 38464288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 398
Target Start/End: Original strand, 19447161 - 19447317
Alignment:
Q  242 ctctcaaacattcactcccttattggatgaatc-aatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtc 340  Q
    ||||||||||  ||||| |||||||| |||| | |||||||||||| |||||||| ||| ||||||||||||||| | |||||| ||| |||||||| ||    
T  19447161 ctctcaaacacccactctcttattgggtgaaaccaatgtatgtcccaccactttatgtgggttccattttcaaaatgcaggaccgacaatgatttaactc 19447260  T
Q  341 aattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactc 398  Q
    |||||| | || |||||||||| | | |||| |||| | |||||||||||||||||||    
T  19447261 aattag-agagtgagtattaaagagagtgttcaaaagagagtgttgctagcactactc 19447317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 25719265 - 25719167
Alignment:
Q  240 ctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaa 337  Q
    |||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||| ||||||||    
T  25719265 ctctctcaaacactcactctcttattggttgaaatcaatgtatgtcccaccactttatgtgggtttcatttccaaaatgtaggacccacaatgatttaa 25719167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 46217253 - 46217076
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatag 130  Q
    ||||| |||||||||  ||||||||||||||| ||| |||||||||| | | |  | |||||| | | |||||||| |||||||||||||| | |||  |    
T  46217253 aaattataaaatagtcattgattgtgtatttcgttagtcaaaatagtctttaacgtcaaaataatctctcaatgctgacattaactcttttcatataagg 46217154  T
Q  131 actgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaattaagggattaacatgacaat 208  Q
    ||| ||||||||||||| || ||| ||| | || | |||||||||||| ||| || ||| ||||| ||| ||||||||    
T  46217153 acttatatgacagtaagaaaatacttatgagaattgatatgataataaataaatatattgagggactaatatgacaat 46217076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 400
Target Start/End: Original strand, 5545642 - 5545766
Alignment:
Q  275 aatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaa 374  Q
    |||||||||||| |||||||| ||| | ||||||||||||| ||| ||||||||||||||||||  ||||| |||||  ||||||| | | | |||| ||    
T  5545642 aatgtatgtcccaccactttatgtgggctccattttcaaaatgtaagacccacattgatttaagcaaatta-aaaagtaagtattagagagagtgttcaa 5545740  T
Q  375 aataaagtgttgctagcactactcat 400  Q
    || | ||||||||||  |||||||||    
T  5545741 aagagagtgttgctaaaactactcat 5545766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 10169822 - 10169720
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    |||||||||| ||||| ||||||||| ||||||  || ||||||||  |||||||||||| ||||| |||||||  |||||||  |||||||| ||||||    
T  10169822 aatgctaacaacattcacttttcaacactctct--aatattcactctattattggatgaaatcaatatatgtcctaccactttgtgtgagttcaattttc 10169725  T
Q  312 aaaac 316  Q
    |||||    
T  10169724 aaaac 10169720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 47237923 - 47237818
Alignment:
Q  210 aggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccatt 308  Q
    |||||||||| || || |||||||| ||| ||||||| | |||||||||  |||||||||| ||||||| |||||||| ||||||||  | |||| ||||    
T  47237923 aggaatgctatcaacactctcttttgaacactctctctagcattcactcttttattggatgaaatcaatatatgtcccaccactttatataagtttcatt 47237824  T
Q  309 ttcaaa 314  Q
    ||||||    
T  47237823 ttcaaa 47237818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 13070000 - 13070127
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgt 370  Q
    ||||||||||||| || |||||||| ||| ||||||||||||||  ||||| || |||||||||| | |||| || || || |||| ||| | | |||||    
T  13070000 aatcaatgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattttactcaa-taaaagagtgagtgttagagaaaatgt 13070098  T
Q  371 ttaaaataaagtgttgctagcactactca 399  Q
    | |||| | ||||||||||||||| ||||    
T  13070099 tcaaaagagagtgttgctagcactcctca 13070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 51206103 - 51206167
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    ||||||||||||||||  ||||||| ||||||| ||||||||||| ||||| || ||||||||||    
T  51206103 aatcaatgtatgtcccatcactttatgtgagtttcattttcaaaatgtaggtcctacattgattt 51206167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 39016664 - 39016787
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    ||||||| || ||||||||||| ||| ||||||  |||| | |||   |||||||||||| |||||||||||||| ||| |||||||| ||||||||| |    
T  39016664 aatgctagcaacattctcttttaaacactctctataacacttactattttattggatgaaatcaatgtatgtcccaccattttacgtgggttccatttcc 39016763  T
Q  312 aaaacgtaggacccacattgattt 335  Q
    |||  |||| | | ||||||||||    
T  39016764 aaagtgtagtatctacattgattt 39016787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 4215212 - 4215104
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatag 130  Q
    ||||||||||||||| |  ||||||| | ||| ||| |||||||||| ||| | ||||||||||| | |||||| | ||||||| |||||| | ||||||    
T  4215212 aaattttaaaatagtctcggattgtgcacttcgttaatcaaaatagtctct-acattaaaatagtgtctcaatgttgacattaaatctttttatatatag 4215114  T
Q  131 actgatatga 140  Q
    || |||||||    
T  4215113 accgatatga 4215104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 33361107 - 33361002
Alignment:
Q  49 tgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagt 148  Q
    |||||||||||||  ||| |||||||||| ||||||||||||||||||  | | || | | ||||| |||||| | | | |||||||||||| | |||||    
T  33361107 tgattgtgtattttattagtcaaaatagtctctgatattaaaatagttccttattgttgatattaaatcttttcataaagagactgatatgataataagt 33361008  T
Q  149 aagtac 154  Q
    ||||||    
T  33361007 aagtac 33361002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 37315620 - 37315684
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| || |||| |||||||||| ||||||  | ||||||||||    
T  37315620 aatcaatgtatgtcccaccactttatgtaagtttcattttcaaagcgtaggttctacattgattt 37315684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 42375284 - 42375192
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactc 117  Q
    |||||||||||| ||| |||| ||||||| || | ||| ||| | |||||||| ||||| ||||||||||| | |||||||| | ||||||||    
T  42375284 gtatcgaaatttcaaagtagtttttgattctgcacttcgttagttaaaatagtctctgacattaaaatagtctctcaatgctgatattaactc 42375192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 42862541 - 42862498
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaa 314  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||    
T  42862541 aatcaatgtatgtcccaccactttatgtgggttccattttcaaa 42862498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 50384465 - 50384560
Alignment:
Q  87 taaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaa 182  Q
    ||||||| | |||||||||| ||| |||||||||| | ||| ||||||| |||||| ||| ||| ||| |||||  | | ||||||||||||||||    
T  50384465 taaaataatctttcaatgctcacaataactctttttatatagagactgaaatgacaataaataaatacttataaggattgatatgataataagtaa 50384560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 399
Target Start/End: Original strand, 8108951 - 8109142
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    ||||| ||||||| || || || ||||||||| ||||||| | || ||||||  ||||||| |||| |||||||||||||| | | |||  ||  ||||     
T  8108951 atgagaaatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgtgtttgttca 8109050  T
Q  306 attttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactca 399  Q
    |||||||||  ||| |||||||| ||||||||  |||| || |||| |||||||| | | | |||| |||| | ||||||||||||| ||||||    
T  8109051 attttcaaagtgta-gacccacaatgatttaaaccaataag-aaagtgagtattagagagagtgttcaaaagagagtgttgctagcattactca 8109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 16970961 - 16970876
Alignment:
Q  68 tcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagta 153  Q
    ||||||| || | ||| ||||||||||| |||| ||||| |||||||||||||| | |||  |||| ||||||||| || ||||||    
T  16970961 tcaaaatggtgtatgacattaaaatagtctttcgatgctgacattaactcttttcatataaggactaatatgacaggaaataagta 16970876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 20177610 - 20177557
Alignment:
Q  129 agactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaa 182  Q
    ||||| |||||||| |||||| |||| |||||||||| || |||||||||||||    
T  20177610 agactaatatgacactaagtaggtacttataaaaacttatgtgataataagtaa 20177557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 337
Target Start/End: Complemental strand, 21777012 - 21776899
Alignment:
Q  225 attctcttttcaacgctctctcaaacattcactcccttattggat-gaatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggac 323  Q
    ||||||||||  || ||||||| |||||||||||  |||||||||  |||||||||||||||  |||||||| |||  ||  |||| ||||| ||| |||    
T  21777012 attctcttttggacactctctctaacattcactcttttattggataaaatcaatgtatgtcctaccactttatgtggattttatttccaaaatgtatgac 21776913  T
Q  324 ccacattgatttaa 337  Q
    ||| || |||||||    
T  21776912 ccatatcgatttaa 21776899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 27654492 - 27654561
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaatc-aatgtatgtcccgccacttta 295  Q
    |||||||||||| ||||||| |||| ||| || |||||||||| || | |||||||||||| ||||||||    
T  27654492 tctcttttcaacactctctctaacactcattctcttattggataaaactaatgtatgtcccaccacttta 27654561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 40997872 - 40997807
Alignment:
Q  85 attaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaa 150  Q
    |||||||||||  |||  |||| ||||| |||||||||| ||| ||||||| ||||||||||||||    
T  40997872 attaaaatagtcattcgttgctgacatttactcttttgatatagagactgaaatgacagtaagtaa 40997807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 16178643 - 16178707
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||  |||||  | ||||||||||    
T  16178643 aatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctacattgattt 16178707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 17381426 - 17381522
Alignment:
Q  112 taactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaattaagggattaacatgacaat 208  Q
    |||||||||||| ||| | ||| | |||||| ||| ||||||| |||||  ||||| |||||||||||||| || ||| | ||| ||| ||||||||    
T  17381426 taactcttttgatatagaaactaaaatgacaataaataagtacgtataaggactaacatgataataagtaagtatattgaaggactaatatgacaat 17381522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 30867048 - 30866992
Alignment:
Q  275 aatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattg 331  Q
    |||||||||||| |||||||| ||| ||||||||||||||  ||||  |||||||||    
T  30867048 aatgtatgtcccaccactttatgtgggttccattttcaaagtgtagatcccacattg 30866992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 30889000 - 30889064
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagt 95  Q
    |||||| ||| |||||| ||||||||| || | |||||||||||||||| |||  ||||||||||    
T  30889000 aaatttcaaattagtatctgattgtgtgttccattattcaaaatagtatgtgacgttaaaatagt 30889064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 51225898 - 51225934
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtattt 61  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  51225898 gtatcgaaattctaaaatagtatttaattgtgtattt 51225934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 46575945 - 46576074
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaatc-aatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || || ||||| |||||| |||||||||||| |||||| |||||||| |||| | |||||||||||| |||||||  ||| |||||||    
T  46575945 gaggaatgctatcaacactctctcttcaacactctctcaaacactcactctcttattggctgaaaccaatgtatgtcccaccactttttgtgggttccat 46576044  T
Q  308 tttcaaaacgtaggacccacattgatttaa 337  Q
    |||||||| ||| | |||||||||||||||    
T  46576045 tttcaaaatgtacgccccacattgatttaa 46576074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 402
Target Start/End: Original strand, 27243040 - 27243235
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    |||||| |||||| || || |||||||| ||| ||||||| |||| ||||||  ||||||||| || |||||| ||||||| |||||||| ||| |||||    
T  27243040 atgagggatgctagcaacactctcttttgaacactctctctaacactcactcttttattggataaaatcaatgcatgtcccaccactttatgtgggttcc 27243139  T
Q  306 attttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactcatat 402  Q
    |||| ||||  ||| |||||||||||||||||  |||| || | || |||||||| | | | |||| |||| | ||||||||||||||| |||||||    
T  27243140 atttccaaagtgtatgacccacattgatttaacccaatgag-agagtgagtattagaaagagtgttcaaaagagagtgttgctagcactcctcatat 27243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 50661687 - 50661576
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggaccc 325  Q
    |||||||| ||| ||||||| |||| | ||||  ||||| ||| || |||||| ||||||| |||||||| ||| ||||||||| ||||| ||| |||||    
T  50661687 tctcttttaaacactctctctaacacttactcttttattagataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaaatgtatgaccc 50661588  T
Q  326 acattgatttaa 337  Q
    ||||||||||||    
T  50661587 acattgatttaa 50661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 46237211 - 46237102
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggaccc 325  Q
    |||||||| | | ||||||| | || ||||||  |||||||||||| |||||||||||||| |||||||| ||| |||||||||  |||| ||||| ||     
T  46237211 tctcttttgagcactctctctagcaatcactcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttccatttctaaaatgtaggtcct 46237112  T
Q  326 acattgattt 335  Q
    ||||||||||    
T  46237111 acattgattt 46237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 28529248 - 28529376
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttcc 305  Q
    ||||||||||||| || || || ||||||||| ||||||| | || ||||||  |||||||||| |||||||||||||||| ||||| |  ||| ||||     
T  28529248 atgaggaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccaccactgt--gtgggttca 28529345  T
Q  306 attttcaaaacgtaggacccacattgatttaa 337  Q
    |||||||||  ||| |||||||| ||||||||    
T  28529346 attttcaaagtgta-gacccacaatgatttaa 28529376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 54141013 - 54140949
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||||||| ||||||||||||||  |||||  | ||||||||||    
T  54141013 aatcaatgtatgtcccaccactttacgtgggttccattttcaaagtgtaggttctacattgattt 54140949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 5452243 - 5452157
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccacttt 294  Q
    ||||||||||| || || || ||||||||| ||||||  |||||||||||  |||||||||| ||||||||||| |||| |||||||    
T  5452243 gaggaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgtatttcccaccacttt 5452157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 20493628 - 20493542
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccacttt 294  Q
    ||||||||||| || || || ||||||||| ||||||| |||| ||||||  |||||||||| |||||||||||||||  |||||||    
T  20493628 gaggaatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgtatgtcctaccacttt 20493542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 37600313 - 37600212
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    |||||||||||||| || |||||||| | | ||||||| | ||  |||||  ||||||| |||| |||||||||||||| |||||||| ||| |||||||    
T  37600313 gaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccat 37600214  T
Q  308 tt 309  Q
    ||    
T  37600213 tt 37600212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 43657116 - 43657056
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattg 331  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||  ||||| | |||||||    
T  43657116 aatcaatgtatgtcccaccactttatgtgagttccatttccaaagtgtaggtctcacattg 43657056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 24749077 - 24748966
Alignment:
Q  225 attctcttttcaacgctctctcaaacattcactcccttattggatga-atcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggac 323  Q
    |||||||||| ||||||||||| |||| ||| ||  |||| || ||| ||||||||||||||| ||| |||| ||| |||||||||  |||  ||||| |    
T  24749077 attctcttttgaacgctctctctaacactcattcttttatggggtgatatcaatgtatgtcccaccattttatgtgggttccatttctaaagtgtaggtc 24748978  T
Q  324 ccacattgattt 335  Q
    | ||||||||||    
T  24748977 ctacattgattt 24748966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 34979226 - 34979159
Alignment:
Q  26 tatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    |||||||||||||||||||| ||| |||||| ||||  ||| |||||||||| ||| | |||||||||    
T  34979226 tatcgaaattttaaaatagtttttaattgtgcattttgttagtcaaaatagtctctcacattaaaata 34979159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 337
Target Start/End: Original strand, 13809083 - 13809207
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    ||||||| || || ||||||||  || ||||||| ||| |||||||  ||||||||| || |||||||||||||| ||| |||| ||| ||||||||| |    
T  13809083 aatgctagcaacactctcttttacacactctctctaac-ttcactcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttcc 13809181  T
Q  312 aaaacgtaggacccacattgatttaa 337  Q
    |||   || ||||||||||| |||||    
T  13809182 aaagtatatgacccacattgttttaa 13809207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 51758530 - 51758683
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgac 124  Q
    ||||| ||||||||| ||| | | | ||||| |||||| | | ||||| || ||| |||  ||||||||||||||||||| | ||||| ||| |||| |     
T  51758530 gtatcaaaattttaatataatctcttattgtatatttcgtcagtcaaattaatatttgacgttaaaatagtttttcaatgttgacattgactatttttat 51758629  T
Q  125 atatagactgatatgacagtaagtaagtacatataaaaactaatatgataataa 178  Q
    ||| ||| |||||||||| ||| ||| ||| || ||  |||||||||| |||||    
T  51758630 atagagattgatatgacaataattaaatacttacaatgactaatatgaaaataa 51758683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 3941862 - 3941706
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgac 124  Q
    ||||| |||||||||||||||  || ||||   ||||  ||| |||||||||| ||| | ||| ||||| | | ||||  || ||| |||||||||| |     
T  3941862 gtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaatagtctctaacattgaaataatctctcaacactcacaataactcttttcat 3941763  T
Q  125 atatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagta 181  Q
    ||| ||||| | |||| | |||||||||| ||||||  ||| |||||||||||||||    
T  3941762 ataaagactaacatgataataagtaagtatatataacgactgatatgataataagta 3941706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 29588853 - 29588782
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaat 343  Q
    |||||||||||||||   ||||||| |||||||| |||||||||  ||| |||||||| |||||||| |||||    
T  29588853 aatcaatgtatgtcctttcactttatgtgagttcaattttcaaagtgta-gacccacaatgatttaaatcaat 29588782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 37776888 - 37776780
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    ||||||||||||| || || || ||||||||| || |||| | || ||||||  ||||| |||||| |||||||||||||  |||||||  ||| ||||     
T  37776888 atgaggaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgtatgtcctaccactttgtgtgggttca 37776789  T
Q  306 attttcaaa 314  Q
    |||||||||    
T  37776788 attttcaaa 37776780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 47944600 - 47944548
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagt 77  Q
    |||| |||||||||||||||| |||||||||| | ||| ||| ||||||||||    
T  47944600 gtattgaaattttaaaatagtctttgattgtgcacttcgttaatcaaaatagt 47944548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 397
Target Start/End: Original strand, 32401114 - 32401302
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||| || | || ||| |||||||| |||||||||||| | |||| |||||||  |||| | ||||||| | || |||||||| ||| |||||||    
T  32401114 gaggaatgcaaataacactctattttcaacactctctcaaacacttactctcttattgagtgaaattaatgtatattccaccactttatgtgggttccat 32401213  T
Q  308 tttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactact 397  Q
    ||| ||||||||||| ||||||| ||||||||||| || || || |||||||| | | | |||| |||| || |||||||||||||||||    
T  32401214 tttaaaaacgtaggatccacattaatttaagtcaacta-aagagtgagtattagagagagtgttcaaaagaaggtgttgctagcactact 32401302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 26675308 - 26675167
Alignment:
Q  37 taaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgat 136  Q
    ||||||||| |||||||||| |||   ||| |||||||||| | ||| | ||||||| | |||||||||  |||  ||||||||| |||||||||||||     
T  26675308 taaaatagtctttgattgtgcattctgttactcaaaatagtctatgacactaaaataatctttcaatgcctacaaaaactcttttcacatatagactgaa 26675209  T
Q  137 atgacagtaagtaagtacatataaaaactaatatgataataa 178  Q
    |||||| ||| ||| ||| ||||| |||| |||||| |||||    
T  26675208 atgacaataaataaatacttataagaactgatatgacaataa 26675167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 26946916 - 26946775
Alignment:
Q  37 taaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgat 136  Q
    ||||||||| |||||||||| |||   ||| |||||||||| | ||| | ||||||| | |||||||||  |||  ||||||||| |||||||||||||     
T  26946916 taaaatagtctttgattgtgcattctgttactcaaaatagtctatgacactaaaataatctttcaatgcctacaaaaactcttttcacatatagactgaa 26946817  T
Q  137 atgacagtaagtaagtacatataaaaactaatatgataataa 178  Q
    |||||| ||| ||| ||| ||||| |||| |||||| |||||    
T  26946816 atgacaataaataaatacttataagaactgatatgacaataa 26946775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 398
Target Start/End: Complemental strand, 12076141 - 12076057
Alignment:
Q  313 aaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactc 398  Q
    ||||||| |||||||||||||||||| ||||||| | || |||||||| ||| | |||| |||| | |||||||||||||||||||    
T  12076141 aaacgtacgacccacattgatttaagccaattag-agagtgagtattagataaagtgttcaaaagagagtgttgctagcactactc 12076057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 22391809 - 22391873
Alignment:
Q  86 ttaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaa 150  Q
    ||||||||||||||||||||| |||||||||||||| | |    |||||||||||||||||||||    
T  22391809 ttaaaatagtttttcaatgctgacattaactctttttataggatgactgatatgacagtaagtaa 22391873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 42224775 - 42224647
Alignment:
Q  208 tgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcca 306  Q
    |||||||||||| || || |||||||| | | ||||||| | || ||||||  ||||| | |||| |||||||||||||| |||||||| ||| ||||||    
T  42224775 tgaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccaccactttatgtgggttcca 42224676  T
Q  307 ttttcaaaacgtaggacccacattgattt 335  Q
    ||| ||||  ||||| || ||||||||||    
T  42224675 tttccaaagtgtaggtcctacattgattt 42224647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 23159248 - 23159185
Alignment:
Q  87 taaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaa 150  Q
    ||||||| |||||||||||| ||| |||||||||| ||||| ||||||| |||||| |||||||    
T  23159248 taaaataatttttcaatgctcacaataactcttttcacatagagactgaaatgacaataagtaa 23159185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 40971639 - 40971509
Alignment:
Q  206 aatgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttc 304  Q
    ||||||||||||||||| || |||||||| | | ||||||| | || ||||||  ||||||  |||| |||||||||||||| |||||||| || ||||     
T  40971639 aatgaggaatgctaacaacactctcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgtatgtcccaccactttatgtaagttt 40971540  T
Q  305 cattttcaaaacgtaggacccacattgattt 335  Q
    ||||| ||||  ||||| |  ||||||||||    
T  40971539 catttccaaagtgtaggtcttacattgattt 40971509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 8206088 - 8206265
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatag 130  Q
    ||||||||||||||| |||||||||| |  |  ||| |||||||||| |||||  |||||||| ||| ||||| |  |||  ||||| ||| | ||| ||    
T  8206088 aaattttaaaatagtctttgattgtgcacattgttaatcaaaatagtctctgacgttaaaataatttctcaatacccacaaaaactcatttcatatagag 8206187  T
Q  131 actgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaattaagggattaacatgacaat 208  Q
    ||| | |||||| | |||| |||| |||||  | | |||||||||||||||| || ||| | ||||||| ||||||||    
T  8206188 actaaaatgacaattagtaggtacttataaggattcatatgataataagtaagtatattgaaggattaatatgacaat 8206265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 13456285 - 13456221
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    ||||||||||| |||| ||| |||| ||| ||||||||||||||  |||||||| ||||||||||    
T  13456285 aatcaatgtatttcccaccattttatgtgggttccattttcaaagtgtaggacctacattgattt 13456221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 23159084 - 23159136
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagt 77  Q
    ||||| |||||||||||||||||||||||||| ||||| ||| | ||||||||    
T  23159084 gtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagt 23159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 42525247 - 42525331
Alignment:
Q  32 aattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaact 116  Q
    |||||||||||| | |||||||||| | ||| ||| |||||||||| ||||| ||| |||||||   |||||||| |||||||||    
T  42525247 aattttaaaataatttttgattgtggacttcattagtcaaaatagtttctgacattgaaatagtccatcaatgctgacattaact 42525331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 8814045 - 8814152
Alignment:
Q  32 aattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatataga 131  Q
    ||||| |||||| |||||||||||  ||||  ||| ||||||||||   | || ||| |||||| | |||||||| |||||||||||||| | ||| |||    
T  8814045 aatttcaaaataatatttgattgtacattttattagtcaaaatagttcataatgttagaatagtctatcaatgctgacattaactcttttcatatagaga 8814144  T
Q  132 ctgatatg 139  Q
    ||||||||    
T  8814145 ctgatatg 8814152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 24444446 - 24444395
Alignment:
Q  26 tatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagt 77  Q
    |||| |||||||||||| ||||||||||||||||||  ||| ||||||||||    
T  24444446 tatccaaattttaaaatggtatttgattgtgtattttgttaatcaaaatagt 24444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 33757647 - 33757580
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaat 92  Q
    ||||| ||||||||||||| | ||| |||||||||||| ||| |||||||| ||| |||| |||||||    
T  33757647 gtatcaaaattttaaaataattttttattgtgtatttcgttagtcaaaataatatttgatgttaaaat 33757580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 3599850 - 3599899
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaat 74  Q
    |||| |||||||||||||||| |||||||||||||||  ||| |||||||    
T  3599850 gtattgaaattttaaaatagtgtttgattgtgtattttgttaatcaaaat 3599899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 12403346 - 12403285
Alignment:
Q  27 atcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatatta 88  Q
    ||||||||||||||||||| |||||||||  ||||  ||| ||||||||||  |||||||||    
T  12403346 atcgaaattttaaaatagtctttgattgtccattttattactcaaaatagtccctgatatta 12403285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 37853498 - 37853425
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatg 104  Q
    ||||||||||||||| ||| ||||| || ||  ||| |||||||||| ||| | ||||||||||| ||||||||    
T  37853498 aaattttaaaatagtttttaattgtatactttgttagtcaaaatagtctctaacattaaaatagtatttcaatg 37853425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 24915115 - 24915179
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    ||||||| |||||||| |||||||| ||| ||||||||||||||  ||| | || ||||||||||    
T  24915115 aatcaatatatgtcccaccactttatgtgggttccattttcaaagtgtatgtcctacattgattt 24915179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 398
Target Start/End: Original strand, 39019572 - 39019752
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || || |||||||||||| |||||||||||| ||      ||||||| |||| |||||||||||||| |||||    ||| ||| |||    
T  39019572 gaggaatgctagcaacactctcttttcaacactctctcaaacactc------ttattgggtgaaatcaatgtatgtcccaccact----gtgggtttcat 39019661  T
Q  308 tttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtattaaatataatgtttaaaataaagtgttgctagcactactc 398  Q
    ||||||||||||||||||||||||||| ||| |||||   | || |||||||| | | | |||| |||| | |||||||||||||||||||    
T  39019662 tttcaaaacgtaggacccacattgattgaagccaatttagagagtgagtattagagaaagtgttcaaaagagagtgttgctagcactactc 39019752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 315
Target Start/End: Complemental strand, 26980445 - 26980338
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccat 307  Q
    |||||||||||||| || || ||||||||| ||||||| || | ||||||  |||||||||| |||||||||||||||| ||| |||  |||||||| ||    
T  26980445 gaggaatgctaacaacactcacttttcaacactctctctaatactcactctattattggatgaaatcaatgtatgtcccaccattttgtgtgagttcaat 26980346  T
Q  308 tttcaaaa 315  Q
    ||||||||    
T  26980345 tttcaaaa 26980338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 32848768 - 32848642
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    |||||||||||||||| || |||||||| ||| ||||||| | || ||||||  ||||||| |||| ||| |||||||||| |||||||| |||  ||||    
T  32848768 atgaggaatgctaacaacactctcttttgaacactctctctagcactcactcttttattgggtgaaatcattgtatgtcccaccactttatgtggattcc 32848669  T
Q  306 attttcaaaacgtaggacccacattga 332  Q
    |||||||||  ||||| || |||||||    
T  32848668 attttcaaagtgtaggtcctacattga 32848642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 19464313 - 19464453
Alignment:
Q  68 tcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaa 167  Q
    |||||||||| ||||| | ||||||| | | |||||||| ||  |||||||||| | |||  |||||| |||||||| ||||||||  |||||||||||     
T  19464313 tcaaaatagtctctgacactaaaataatatctcaatgctcacgataactcttttcatatagggactgaaatgacagtcagtaagtatctataaaaactat 19464412  T
Q  168 tatgataataagtaactaaattaagggattaacatgacaat 208  Q
    ||||||||||| ||| || ||| |  |||||| ||||||||    
T  19464413 tatgataataaataagtatattgaatgattaatatgacaat 19464453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 11135733 - 11135863
Alignment:
Q  206 aatgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttc 304  Q
    |||||||||||||| || || |||||||| | | ||||||| | || |||||   ||||||| |||| |||||||||||||| |||||||| ||| ||||    
T  11135733 aatgaggaatgctagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgtatgtcccaccactttatgtgggttc 11135832  T
Q  305 cattttcaaaacgtaggacccacattgattt 335  Q
    ||||| ||||  ||||| || ||||||||||    
T  11135833 catttccaaagtgtaggtcctacattgattt 11135863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 332
Target Start/End: Original strand, 11430436 - 11430562
Alignment:
Q  207 atgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttcc 305  Q
    |||||||||||||||| || |||||||| | | |||| || | || ||||||  ||||||| |||| |||||||||||||| |||||||| ||| |||||    
T  11430436 atgaggaatgctaacaacactctcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttcc 11430535  T
Q  306 attttcaaaacgtaggacccacattga 332  Q
    |||| ||||  ||||| || |||||||    
T  11430536 atttccaaagtgtaggtcctacattga 11430562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 8987220 - 8987316
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactctttt 121  Q
    ||||| ||||||||||||||||||| ||| || | ||| ||| ||  |||||| ||| | |||||||||||| ||||||||  ||||||||||||||    
T  8987220 gtatcaaaattttaaaatagtatttaattatgcacttcgttaatctgaatagtctcttacattaaaatagttcttcaatgccgacattaactctttt 8987316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 335
Target Start/End: Complemental strand, 14094184 - 14094057
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| |  |||| |||||| ||| ||||||| | || |||||   ||||||| |||| |||||||||||||| |||||||| ||| |||||||    
T  14094184 gaggaatgctagcgacattatcttttgaacactctctccagcactcacttttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccat 14094085  T
Q  308 tttcaaaacgtaggacccacattgattt 335  Q
    || ||||  ||||| || ||||||||||    
T  14094084 ttccaaagtgtaggtcctacattgattt 14094057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 33747324 - 33747391
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaat 92  Q
    |||||||||||| |||| ||||||||||| || | ||| ||| |||||||||| ||||||||||||||    
T  33747324 gtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtctctgatattaaaat 33747391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 9776859 - 9777016
Alignment:
Q  27 atcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacat 126  Q
    ||||||||| || |||||| |||||||||  ||||  ||| | |||||||| ||||||||||||||| | |||||||| | ||||||| |||||| | ||    
T  9776859 atcgaaattctagaatagt-tttgattgtacattttattagttaaaatagtctctgatattaaaataatatttcaatgttgacattaattctttttatat 9776957  T
Q  127 atagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaacta 185  Q
    |   | |  ||||||| ||| ||||||| ||||||  || |||||| ||||||||||||    
T  9776958 aggaattagtatgacaataaataagtacttataaaggctgatatgacaataagtaacta 9777016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 41918055 - 41918119
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| |||  |||||||||||||  ||||| || ||||||||||    
T  41918055 aatcaatgtatgtcccaccactttatgtggattccattttcaaagtgtaggtcctacattgattt 41918119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 10019010 - 10018924
Alignment:
Q  31 aaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttt 120  Q
    ||||||||||||||| |||||||||||| ||||||| |||||   || |||||   ||||||| |||  ||||| |||||||||||||||    
T  10019010 aaattttaaaatagtttttgattgtgtacttctttagtcaaa---gtctctgacgctaaaataatttcacaatggtaacattaactcttt 10018924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 19101732 - 19101678
Alignment:
Q  261 ttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaa 314  Q
    |||||||||||| |||||||||||||| |||||||| | |||||| |||||||||    
T  19101732 ttattggatgaaatcaatgtatgtcccaccactttatgcgagttctattttcaaa 19101678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 28274801 - 28274846
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaa 272  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||||    
T  28274801 tctcttttcaacactctctctaacactcactctcttattggatgaa 28274846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 38445025 - 38445130
Alignment:
Q  89 aaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaat 188  Q
    |||||||  ||||||||| ||| |||||||||| | |||   | |||||||||| ||||||||||| |||| | | | |||||||| ||||||| || ||    
T  38445025 aaatagtccttcaatgctgacaataactcttttcatataggaattgatatgacaataagtaagtacttatagagattgatatgatagtaagtaagtatat 38445124  T
Q  189 taaggg 194  Q
    ||||||    
T  38445125 taaggg 38445130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 32743381 - 32743313
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    ||||| ||||||||||||| | |||||||||  ||||| ||| |||||||| | ||||| |||||||||    
T  32743381 gtatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaataatctctgacattaaaata 32743313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 21145686 - 21145529
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgac 124  Q
    |||||||||||  |||||||| |  |||| ||  |||| ||| |||||||||| |||||| ||||||||||   |||||||| |||||||||||||| |     
T  21145686 gtatcgaaattccaaaatagtctcagattatgcgtttcgttagtcaaaatagtctctgatgttaaaatagtccctcaatgctgacattaactctttttat 21145587  T
Q  125 atatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagtaa 182  Q
    |||  |||||||| |||||| ||||||||| |||||  ||| |||||| | |||||||    
T  21145586 atagggactgataggacagtgagtaagtacttataaggactgatatgacagtaagtaa 21145529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 35689529 - 35689600
Alignment:
Q  261 ttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattg 331  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||  ||| | |||||||||    
T  35689529 ttattggatgaaatcaatgtatgtcccaccactttatgtgagttccattttcaaagtgtaagtcccacattg 35689600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 9453505 - 9453598
Alignment:
Q  255 actcccttattggatgaatc-aatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaattaga 347  Q
    |||| ||||||||||||| | |||| |||||||  ||||||||||| ||||| ||||||||| ||| ||||||||| |||||||  ||||||||    
T  9453505 actctcttattggatgaaaccaatgcatgtcccatcactttacgtgggttcccttttcaaaatgtatgacccacatagatttaacccaattaga 9453598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 13407444 - 13407378
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaa 337  Q
    |||||||||||||||| ||| |||| ||| |||| |||||||||  ||| |||||||||||||||||    
T  13407444 aatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgtatgacccacattgatttaa 13407378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7681061 - 7681012
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaat 74  Q
    ||||| |||||||||||||||||||||||||| ||||| ||| |||||||    
T  7681061 gtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 4493202 - 4493110
Alignment:
Q  86 ttaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaatatgataataa 178  Q
    |||||||| | ||||||| |  ||| |||||||||| | ||| ||||||| |||||| |||| ||||||||||||||| | |||| |||||||    
T  4493202 ttaaaataatctttcaatccacacaataactcttttcatatagagactgaaatgacaataagcaagtacatataaaaagtgatataataataa 4493110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 28414049 - 28413946
Alignment:
Q  212 gaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccatttt 310  Q
    ||||||||||| || || ||||||||| ||||||| | |  |||||   ||||| |||||| |||||||||||||| |||||||  |||||||| |||||    
T  28414049 gaatgctaacaacactcacttttcaacactctctctagcgctcacttttttattcgatgaaatcaatgtatgtcccaccactttgtgtgagttcaatttt 28413950  T
Q  311 caaa 314  Q
    ||||    
T  28413949 caaa 28413946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 32072098 - 32072228
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    ||||||| || ||||| ||||||||| ||||||| | || ||||||  |||||||||| ||| |||||||||||| |||||||  ||| |||| |||||     
T  32072098 aatgctagcaacattcacttttcaacactctctctagcactcactcttttattggatgaaatgaatgtatgtcccaccactttgtgtgggttcaattttt 32072197  T
Q  312 aaaacgtaggacccacattgatttaagtcaat 343  Q
    |||  ||| |||||||| | |||||| |||||    
T  32072198 aaagtgta-gacccacaattatttaaatcaat 32072228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 11310507 - 11310414
Alignment:
Q  251 attcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaat 343  Q
    |||||||| |||||||  |||| |||||||||||||| |||  ||| |||| || ||||||||||  ||| ||||||| ||||||||| |||||    
T  11310507 attcactctcttattgagtgaaatcaatgtatgtcccaccatattatgtgaatttcattttcaaagtgtatgacccacgttgatttaattcaat 11310414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 33508583 - 33508628
Alignment:
Q  137 atgacagtaagtaagtacatataaaaactaatatgataataagtaa 182  Q
    |||||| ||||||||||||||||| |||| |||| |||||||||||    
T  33508583 atgacaataagtaagtacatataataactgatataataataagtaa 33508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 43026351 - 43026412
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattga 332  Q
    ||||||||||||||| ||||||||| ||| ||||||||| ||||  ||||| || |||||||    
T  43026351 aatcaatgtatgtcctgccactttatgtgggttccatttccaaagtgtaggtcctacattga 43026412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 6387591 - 6387687
Alignment:
Q  242 ctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaa 337  Q
    ||||| |||| ||||||  ||||||||| || |||||||||||||| ||| |||| ||| ||||||||| ||||   || ||||||||||| |||||    
T  6387591 ctctctaacactcactcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaagtatacgacccacattgttttaa 6387687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 13003106 - 13003031
Alignment:
Q  132 ctgatatgacagtaagtaagtacatataaaaactaatatgataataagtaactaaattaagggattaacatgacaat 208  Q
    ||||||||||| ||||||||||| |  | | |||||||||| ||||||||| || ||||||||||||| || |||||    
T  13003106 ctgatatgaca-taagtaagtacttgcatagactaatatgacaataagtaagtacattaagggattaatataacaat 13003031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 33508733 - 33508665
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    |||||||||||| ||||||||  |||| |||| ||||| ||| |||||||| | ||||| |||||||||    
T  33508733 gtatcgaaatttcaaaatagttattgagtgtgcatttcattaatcaaaataatctctgacattaaaata 33508665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 38091536 - 38091488
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcact 257  Q
    ||||||||||| || ||||||||||||||| ||||||| |||| |||||    
T  38091536 gaggaatgctagcaacattctcttttcaacactctctccaacactcact 38091488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 10067772 - 10067704
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    ||||||||||||||||||||| | |||||||||||||  ||| |||||||||| ||||| |||||||||    
T  10067772 gtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaata 10067704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 516043 - 515893
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgac 124  Q
    |||||||||||  ||||||||   |||||||| | ||| ||| |||||||||| |||||| |||| || ||   |||||  | |||||||||||||| |     
T  516043 gtatcgaaattccaaaatagtcaatgattgtgcacttcgttagtcaaaatagtctctgatgttaagatggtccctcaatattgacattaactcttttcat 515944  T
Q  125 atatagactgatatgacagtaagtaagtacatataaaaactaatatgataa 175  Q
    ||| | |||||||||||| ||||||||||| |||||  ||| |||||||||    
T  515943 atagaaactgatatgacaataagtaagtacttataatgactgatatgataa 515893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 10060919 - 10060981
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgat 333  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||  ||||| || ||||||||    
T  10060919 aatcaatgtatgtcccgccactttatgtgggttccattttcaaagtgtaggtcctacattgat 10060981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 350
Target Start/End: Original strand, 6109869 - 6110010
Alignment:
Q  210 aggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggat-gaatcaatgtatgtcccgccactttacgtgagttccatt 308  Q
    |||||||||||||  ||||||||||||||  | ||||||||| ||  ||  |||||| ||  |||||||| ||||||  |||||||| ||| ||| ||||    
T  6109869 aggaatgctaacaagattctcttttcaacattttctcaaacactcgttcttttattgaataaaatcaatgcatgtcctaccactttatgtgggtttcatt 6109968  T
Q  309 ttcaaaacgtaggacccacattgatttaagtcaattagaaaa 350  Q
    || || || || |||| | |||||||||||||||||||||||    
T  6109969 ttaaatacataagaccaagattgatttaagtcaattagaaaa 6110010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 335
Target Start/End: Complemental strand, 35128888 - 35128779
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggaccc 325  Q
    |||||||| ||| ||||||| | || ||||||  ||||||| | || |||||||||||||| |||||||| ||| ||||||||||||||  ||||| ||     
T  35128888 tctcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcct 35128789  T
Q  326 acattgattt 335  Q
    ||||||||||    
T  35128788 acattgattt 35128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 19090398 - 19090274
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    |||||||||||||| || |||||||| | | ||||||| | ||  |||||  ||||||| |||| |||||||||||||| |||||||| ||| |||||||    
T  19090398 gaggaatgctaacaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccat 19090299  T
Q  308 tttcaaaacgtaggacccacattga 332  Q
    || ||||  ||||| || |||||||    
T  19090298 ttccaaagtgtaggtcctacattga 19090274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 34905355 - 34905461
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacat 329  Q
    |||||||| ||||||| |||| ||||||  |||||||||| |||||||||||||||| |||||||   || |||| |||||||||  ||| ||||||||     
T  34905355 ttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgta-gacccacaa 34905453  T
Q  330 tgatttaa 337  Q
    ||||||||    
T  34905454 tgatttaa 34905461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 21020987 - 21021042
Alignment:
Q  126 tatagactgatatgacagtaagtaagtacatataaaaactaatatgataataagta 181  Q
    |||||||||| |||||| ||||||||||| |||||| ||  |||||||||||||||    
T  21020987 tatagactgaaatgacaataagtaagtacttataaagaccgatatgataataagta 21021042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 32122796 - 32122926
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttc 311  Q
    |||||||||| || |||||||||||| |||| || | || |||||   |||||||||| ||||||| |||||||| ||| |||  | |||||| ||||||    
T  32122796 aatgctaacaacactctcttttcaacactctttccaccactcacttatttattggatgaaatcaatatatgtcccaccattttgtgggagttcaattttc 32122895  T
Q  312 aaaacgtaggacccacattgatttaagtcaat 343  Q
    |||  ||| |||||||| ||||||||| ||||    
T  32122896 aaagtgta-gacccacaatgatttaagccaat 32122926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 23140539 - 23140649
Alignment:
Q  68 tcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactcttttgacatatagactgatatgacagtaagtaagtacatataaaaactaa 167  Q
    |||||||||| ||| | ||||||| |||   ||||  |||| |||||||||||  | ||| |||||||| |||| |||||||| ||| ||||| |||| |    
T  23140539 tcaaaatagtctctaacattaaaagagtcactcaactctaatattaactctttcaatataaagactgatttgactgtaagtaaatacttataacaactga 23140638  T
Q  168 tatgataataa 178  Q
    |||||||||||    
T  23140639 tatgataataa 23140649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 921446 - 921499
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagta 78  Q
    ||||| ||||||||||||| ||||||||||||||||  |||| ||||| |||||    
T  921446 gtatcaaaattttaaaataatatttgattgtgtattattttagtcaaagtagta 921499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 6531481 - 6531380
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || || |||||||| |   ||||||| | || ||||||  ||||||| |||| |||||||||||||| | |||||| |||||||||||    
T  6531481 gaggaatgctagcaacactctcttttgaggactctctccagcactcactcttttattgggtgaaatcaatgtatgtcccactactttatgtgagttccat 6531382  T
Q  308 tt 309  Q
    ||    
T  6531381 tt 6531380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 10133320 - 10133235
Alignment:
Q  230 cttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttcaaa 314  Q
    ||||||||| ||||||| |||| ||||||  |||||||||| ||| | |||||||||| |||||||| | | |||| |||||||||    
T  10133320 cttttcaacactctctctaacactcactcatttattggatgaaattattgtatgtcccaccactttatgggggttcaattttcaaa 10133235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 29610426 - 29610333
Alignment:
Q  203 gacaatgaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttatt-ggatgaatcaatgtatgtcccgccacttta 295  Q
    ||||| ||||||||||||   || |||||||||||| |||||||||||| |||||  |||||| |  | ||| |||||||||||| ||||||||    
T  29610426 gacaaagaggaatgctaatgacactctcttttcaacactctctcaaacactcacttgcttattagtttaaatgaatgtatgtcccaccacttta 29610333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 373459 - 373523
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    ||||||||||||||||  ||||||| |||  |||||||||||||  ||||| || ||||||||||    
T  373459 aatcaatgtatgtcccagcactttatgtggattccattttcaaagggtaggtcctacattgattt 373523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 6119149 - 6119193
Alignment:
Q  306 attttcaaaacgtaggacccacattgatttaagtcaattagaaaa 350  Q
    ||||||||| |||||||| ||||||||||||||| ||||| ||||    
T  6119149 attttcaaaccgtaggacacacattgatttaagttaattaaaaaa 6119193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 12794930 - 12794870
Alignment:
Q  275 aatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    ||||||| |||| |||||||| ||||||| ||||||||||| ||||| || ||||| ||||    
T  12794930 aatgtatatcccaccactttatgtgagtttcattttcaaaatgtaggtcctacattaattt 12794870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 28995586 - 28995518
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    |||| |||||||||||||| ||||||||| | || ||| ||| |||||||||| ||| | |||||||||    
T  28995586 gtattgaaattttaaaataatatttgattatttacttcgttagtcaaaatagtttctaacattaaaata 28995518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 35629 - 35721
Alignment:
Q  247 aaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaag 338  Q
    ||||| |||||| |||||| |||||| ||||||||||||||  || |||| ||| |||||||| |||||| |||||| |||||| ||||||||    
T  35629 aaacactcactctcttatttgatgaaatcaatgtatgtcccatcattttatgtgggttccattctcaaaatgtaggatccacatagatttaag 35721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 13919840 - 13919904
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||  ||||| || ||||||||||    
T  13919840 aatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattt 13919904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 335
Target Start/End: Complemental strand, 17354710 - 17354583
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || || ||| |||| | | ||||||| |||| ||| ||  |||||||||||| |||||||||||||| |||||||| ||| |||| ||    
T  17354710 gaggaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctat 17354611  T
Q  308 tttcaaaacgtaggacccacattgattt 335  Q
    || ||||  ||||| || ||||||||||    
T  17354610 ttccaaagtgtaggtcctacattgattt 17354583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 24539288 - 24539177
Alignment:
Q  227 tctcttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggaccc 325  Q
    ||||||||  || ||||||| |||| ||||||  ||||||||| || ||||| |||||||| ||||||||  ||  |||||||| ||||| ||| |||||    
T  24539288 tctcttttggacactctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggattccatttccaaaatgtatgaccc 24539189  T
Q  326 acattgatttaa 337  Q
    ||||||||||||    
T  24539188 acattgatttaa 24539177  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 23532900 - 23532997
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatag-tatctgatattaaaatagtttttcaatgctaacattaactctttt 121  Q
    |||||||||||||||||||||  ||||||||| | ||| ||| ||||||||| | | | || |||||||||| | |||||| | ||||||||||||||    
T  23532900 gtatcgaaattttaaaatagttattgattgtggacttcgttaatcaaaatagtttttttatgttaaaatagtctctcaatggtgacattaactctttt 23532997  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 46067952 - 46068062
Alignment:
Q  227 tctcttttcaacgctctctca-aacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacc 324  Q
    |||||||| | |||||||||  |||| ||||||||||||||| |||| ||||||||||| || |||||||| ||| ||||||||| | ||  ||||||      
T  46067952 tctctttttagcgctctctcttaacactcactcccttattggttgaaatcaatgtatgttccaccactttatgtgggttccatttccgaattgtagga-- 46068049  T
Q  325 cacattgatttaa 337  Q
    |||||||||||||    
T  46068050 cacattgatttaa 46068062  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 7775019 - 7775103
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaa 314  Q
    |||||||| ||||||  | || ||||||  |||||||||||| |||||||||||||| |||||||  |||||||| |||||||||    
T  7775019 ttttcaacactctctatagcactcactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgagttcaattttcaaa 7775103  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 19494459 - 19494395
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||  ||||  || ||||||||||    
T  19494459 aatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtagatcctacattgattt 19494395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 23441508 - 23441604
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactctttt 121  Q
    |||||||||||||||||||||  ||||||||| | ||| ||| |||||||||| | | || |||||| ||| | |||||| | ||| ||||||||||    
T  23441508 gtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagtttttaatgttaaaacagtctctcaatggtgacactaactctttt 23441604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 23457866 - 23457770
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactctttt 121  Q
    |||||||||||||||||||||  ||||||||| | ||  ||| |||||||||| | |  | |||||||||| | |||||| | ||||||||||||||    
T  23457866 gtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaatagttttttgtgttaaaatagtctctcaatggtgacattaactctttt 23457770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 23474562 - 23474658
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaatagtttttcaatgctaacattaactctttt 121  Q
    ||||| |||||||||||||||  ||||||||| | ||| ||| |||||||||| | | || |||||||| | | |||||| | ||||||||||||||    
T  23474562 gtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagttttttatgttaaaataatctctcaatggtgacattaactctttt 23474658  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 45909516 - 45909580
Alignment:
Q  271 aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgattt 335  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||  ||||| || ||||||||||    
T  45909516 aatcaatgtatgtcccaccactttatgtgggttccatttccaaattgtaggtcctacattgattt 45909580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 17749722 - 17749820
Alignment:
Q  240 ctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaa 337  Q
    ||||||| |||| ||||||  ||||||||| || ||||| |||||||| ||||||||  ||  || ||||| ||||| ||| |||||||||||||||||    
T  17749722 ctctctctaacactcactcttttattggataaaatcaatatatgtcccaccactttatatggatttcatttccaaaatgtatgacccacattgatttaa 17749820  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 31502647 - 31502541
Alignment:
Q  209 gaggaatgctaacatcattctcttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtcccgccactttacgtgagttccat 307  Q
    ||||||||||| || || || |||||||||  |||||| |||| ||||||  |||||||||| |||||| ||||||||| ||| |||  ||| |||| ||    
T  31502647 gaggaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaat 31502548  T
Q  308 tttcaaa 314  Q
    |||||||    
T  31502547 tttcaaa 31502541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 5362299 - 5362367
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagtatctgatattaaaata 93  Q
    |||||||||||| ||||||||   |||||||||| ||  ||| ||||||||||  ||||||||||||||    
T  5362299 gtatcgaaatttcaaaatagttcatgattgtgtaatttgttagtcaaaatagtccctgatattaaaata 5362367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 7775180 - 7775128
Alignment:
Q  213 aatgctaacatcattctcttttcaacgctctctcaaacattcactcccttatt 265  Q
    |||||||||| ||||||||||| ||| ||||||| || |||||||| ||||||    
T  7775180 aatgctaacaacattctcttttgaacactctctctaatattcactcacttatt 7775128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 10228755 - 10228807
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtatttctttattcaaaatagt 77  Q
    |||||||||||| |||||||| |||||||||| | ||| ||| ||||||||||    
T  10228755 gtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagt 10228807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 11824090 - 11824146
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatg-aatcaatgtatgtccc 286  Q
    |||||||||||||||| | || ||||||  |||||||||| ||||||||||||||||    
T  11824090 ttttcaacgctctctctagcactcactcttttattggatgaaatcaatgtatgtccc 11824146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 22189958 - 22190042
Alignment:
Q  231 ttttcaacgctctctcaaacattcactcccttattggatgaa-tcaatgtatgtcccgccactttacgtgagttccattttcaaa 314  Q
    |||||||| ||||||| | || ||||||  |||||||||||| |||||||||| ||| |||||||  ||| |||| |||||||||    
T  22189958 ttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaa 22190042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 400
Target Start/End: Original strand, 27861 - 27999
Alignment:
Q  261 ttattggatg-aatcaatgtatgtcccgccactttacgtgagttccattttcaaaacgtaggacccacattgatttaagtcaattagaaaagcgagtatt 359  Q
    |||||||||| |||||||||||||||| |||||||  ||| |||| |||| ||||  ||| |||||||| ||||||||  |||| || | || |||||||    
T  27861 ttattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgta-gacccacaatgatttaaaccaataag-agagtgagtatt 27958  T
Q  360 aaatataatgtttaaaataaagtgttgctagcactactcat 400  Q
    ||| | | |||| |||| |  ||||||||||||||||||||    
T  27959 aaagagagtgttcaaaagagggtgttgctagcactactcat 27999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 21647 - 21683
Alignment:
Q  25 gtatcgaaattttaaaatagtatttgattgtgtattt 61  Q
    |||||| |||||||||||| |||||||||||||||||    
T  21647 gtatcgcaattttaaaataatatttgattgtgtattt 21683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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