View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_high_7 (Length: 459)

Name: NF16797_high_7
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_high_7
NF16797_high_7
[»] chr3 (15 HSPs)
chr3 (69-158)||(6939308-6939397)
chr3 (302-441)||(6935093-6935233)
chr3 (221-291)||(6939013-6939083)
chr3 (35-147)||(6526797-6526909)
chr3 (35-147)||(6848377-6848489)
chr3 (296-370)||(50302103-50302176)
chr3 (315-378)||(6525438-6525500)
chr3 (185-221)||(6526944-6526980)
chr3 (315-375)||(6799224-6799283)
chr3 (315-378)||(6410638-6410700)
chr3 (185-224)||(6558187-6558226)
chr3 (182-221)||(6789001-6789040)
chr3 (73-147)||(6558078-6558152)
chr3 (250-291)||(6549838-6549879)
chr3 (192-221)||(6848532-6848561)
[»] scaffold0425 (2 HSPs)
scaffold0425 (35-147)||(11504-11616)
scaffold0425 (185-221)||(11651-11687)


Alignment Details
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 6939397 - 6939308
Alignment:
Q  69 atgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttactccagttttca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6939397 atgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttactccagttttca 6939308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 302 - 441
Target Start/End: Complemental strand, 6935233 - 6935093
Alignment:
Q  302 tgtttgaatttcgggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatctgaatctcattgtaggacc--nn 399  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||        
T  6935233 tgtttggattccgggtgaatttgat-agaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatttgaatcacattgtaggacctttt 6935135  T
Q  400 nnnnnggtctctttaacgttaatcaactgatgctgaaactac 441  Q
         |||||||||||||||||||||||||||||||||||||    
T  6935134 tttttggtctctttaacgttaatcaactgatgctgaaactac 6935093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 6939083 - 6939013
Alignment:
Q  221 tcaataagactggcctgttataatcaatcaatgtaacacagaaccattctgcaaggcatcactctaattta 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6939083 tcaataagactggcctgttataatcaatcaatgtaacacagaaccattctggaaggcatcactctaattta 6939013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 6526797 - 6526909
Alignment:
Q  35 attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca 134  Q
    |||||||| ||||||| |||||||  | ||| |||   ||||| |||||||||||| || || || ||||||||||| |||||||| |||||||||||||    
T  6526797 attgtctgtttttcttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtca 6526896  T
Q  135 tgtggccttttac 147  Q
    |||||||||||||    
T  6526897 tgtggccttttac 6526909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 6848377 - 6848489
Alignment:
Q  35 attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca 134  Q
    |||||||| ||||||| |||||||  | ||| |||  |||||| |||||||||||| || || || ||||||||||| |||||||| |||||||||| ||    
T  6848377 attgtctgtttttcttcttgtgtcttcccaggaaacacgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgcca 6848476  T
Q  135 tgtggccttttac 147  Q
    |||||||||||||    
T  6848477 tgtggccttttac 6848489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 50302103 - 50302176
Alignment:
Q  296 tgtgcatgtttgaatttcgggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttca 370  Q
    ||||||||||||  || || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  50302103 tgtgcatgtttgggttccgtgtgaatttgatt-gaattgtggcaattttgtcaaaatttatatttttgaacttca 50302176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 6525438 - 6525500
Alignment:
Q  315 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatc 378  Q
    |||||||||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||||||||    
T  6525438 ggtgaatttgat-agaatcgtggtaattttgtcaaaatttatacttttgaacttcaacaaaatc 6525500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 6526944 - 6526980
Alignment:
Q  185 aagtgataaaaaattgaatgacatgccactttgttgt 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  6526944 aagtgataaaaaattgaatgacatgccactttgttgt 6526980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 6799224 - 6799283
Alignment:
Q  315 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaa 375  Q
    |||||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||    
T  6799224 ggtgaatttgat-agaattgtggtaattttgtcaaaatttgtacttttgaacttcaacaaa 6799283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 6410638 - 6410700
Alignment:
Q  315 ggtgaatttgattagaattgtggcaattttgtccaaatttatatttttgaacttcaacaaaatc 378  Q
    |||||||||||| |||||||||  ||||||||| ||||||||| ||||||| ||||||||||||    
T  6410638 ggtgaatttgat-agaattgtgataattttgtcaaaatttatacttttgaatttcaacaaaatc 6410700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 6558187 - 6558226
Alignment:
Q  185 aagtgataaaaaattgaatgacatgccactttgttgtcaa 224  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  6558187 aagtgataaaaaattgaatgacatgccaccttgttgtcaa 6558226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 6789001 - 6789040
Alignment:
Q  182 aagaagtgataaaaaattgaatgacatgccactttgttgt 221  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  6789001 aagaagtcataaaaaattgaatgacatgccactttgttgt 6789040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 6558078 - 6558152
Alignment:
Q  73 gagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtcatgtggccttttac 147  Q
    ||||| |||||||| ||| || || || | |||||||||  ||||||| ||||||||||||||||||||||||||    
T  6558078 gagacttgagaaaaaaagccgatgaattacttgcatcaacaaattacatggtgaggatgtcatgtggccttttac 6558152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 6549838 - 6549879
Alignment:
Q  250 aatgtaacacagaaccattctgcaaggcatcactctaattta 291  Q
    |||||||||||||||||||||||||||||  |||| ||||||    
T  6549838 aatgtaacacagaaccattctgcaaggcactactccaattta 6549879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 6848532 - 6848561
Alignment:
Q  192 aaaaaattgaatgacatgccactttgttgt 221  Q
    ||||||||||||||||||||||||||||||    
T  6848532 aaaaaattgaatgacatgccactttgttgt 6848561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 11504 - 11616
Alignment:
Q  35 attgtctgcttttctttttgtgtcggctcagaaaatgcgagacatgagaaaagaaggcgctggataaattgcatcaatcaattacacggtgaggatgtca 134  Q
    |||||||| ||||||| |||||||  | ||| |||   ||||| |||||||||||| || || || ||||||||||| |||||||| |||||||||||||    
T  11504 attgtctgtttttcttcttgtgtcttcccaggaaacatgagacttgagaaaagaagccgatgaattaattgcatcaaccaattacatggtgaggatgtca 11603  T
Q  135 tgtggccttttac 147  Q
    |||||||||||||    
T  11604 tgtggccttttac 11616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 11651 - 11687
Alignment:
Q  185 aagtgataaaaaattgaatgacatgccactttgttgt 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  11651 aagtgataaaaaattgaatgacatgccactttgttgt 11687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University