View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_high_9 (Length: 444)
Name: NF16797_high_9
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 90 - 436
Target Start/End: Complemental strand, 48066152 - 48065810
Alignment:
| Q |
90 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggnnnnnnnnnnnncaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
189 |
Q |
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| T |
48066152 |
cgtatgacgataggaaaagacaaaatttgaatatggggtgaggaaaaaacaaaaacaccatagaagataatgcaaatacatgaacggtagaaaatttgaa |
48066053 |
T |
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| Q |
190 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaacttgtagctaaaattataacatttagaaccacaaacaaacttgg |
289 |
Q |
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| T |
48066052 |
tgaagggaaatcctcctattccaaggtgcaattttttaggtgaaaaatttaaaaaagttgtagctaaaattataacatttagaaccacaaacaaacttgg |
48065953 |
T |
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| Q |
290 |
taagttacaatcttagtaaaaagataaagaccacatacatacatataccccactcaatccgtacttcaaaccatatccgggtgaataatcattatcttcc |
389 |
Q |
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| T |
48065952 |
taagttacaatcttagtaaaaagataaagaccacata----catataccccactcaatccgtacttcaaaccatatccgggtgaataatcattgtcttcc |
48065857 |
T |
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| Q |
390 |
ctctcaaacgttttcttctcttaacaacctcaaatttcaactttcaa |
436 |
Q |
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| T |
48065856 |
ctctcaaacgttttcttctcttaacaacctcaaatttctaccttcaa |
48065810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 48066522 - 48066490
Alignment:
| Q |
12 |
actgaaaagaagctagaggtgatattgcctagg |
44 |
Q |
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| T |
48066522 |
actgaaaagaagctagaggtgatattgcctagg |
48066490 |
T |
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