View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_1 (Length: 756)
Name: NF16797_low_1
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 10 - 740
Target Start/End: Complemental strand, 31750540 - 31749807
Alignment:
| Q |
10 |
catcatcatgttttgggataaaagattatcaacaactcttttagaataaatctcaaaattaagtgtcccaacttaattcatgaatccgtcctaatgctaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31750540 |
catcatcatgttttgggataaaagattatcaacaactcttttagaataaatctcaaaattaagtgtcccaacttaattcatgaacccgtcctaatgctaa |
31750441 |
T |
|
| Q |
110 |
tagtagactaagagcttcgccaatatgaacatcacacattgagataaaccattcagttttctactaaaacatgaaatatttatttttacccttaaaataa |
209 |
Q |
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||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31750440 |
tagcagactaagagcttcaccaatatgaacatcacacattgagataaaccatttagttttctactaaaaaatgaaatatttatttttacccttaaaataa |
31750341 |
T |
|
| Q |
210 |
ttgaaatatttatcttttctaattaaatttctccaaggnnnnnnnnnctcatagtaatctctaactcgtcatatttatgagtttgtttatgaacaatatg |
309 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31750340 |
ttgaaatatttattttttctaattaaatttctccaaggaaaaaaaaactcttagtaatctctaactcgtcatatttatgagtttgtttatgaacaatatg |
31750241 |
T |
|
| Q |
310 |
atacaccataaatacataggcatgacaaattgacgatgagacaaagcgggtttggctttccccatccccaaattccatatacttatttgttactccatat |
409 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
31750240 |
atacaccataaacacataggcatgacaaattgacaatgagacgaagcgggtttgactttccccgtccccaaattccatatacttatttgttacttcatat |
31750141 |
T |
|
| Q |
410 |
gtttcatataag-aaaagttatttgaaacagcttctaaaaaac-cttgttacacagacaattgagataaactcattttgctaacacgtctactttggtga |
507 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31750140 |
gtttcatataaacaaaagttatttgaaatagcttctaaaaaaaacttgttacatagacaattgagataaactcattttgctaacacgtctactttggtga |
31750041 |
T |
|
| Q |
508 |
aggaaaata-gtcaaacaatacaatttatcttgcttattgaacttgccaaagagagaatgtagaaactaaaaagaatatcatagttaagctagaattaaa |
606 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31750040 |
aggaaaataagtcaaacaatacaaactatcttgcttattgaacttgccaaagagagaatgtagaaactaaaaagaatatcatagttaaactagaattaaa |
31749941 |
T |
|
| Q |
607 |
ccaagaaaagctccctaattaaccaccctgcagtccttcctaatctcttgaccaccattgatgctactcattttgaccattgacttcacaaaagccttgt |
706 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749940 |
ccaagaaaaactccctaattaaccaccctgcagtccttcctaatctcttgaccaccattgatgctactcattttgaccattgacttcacaaaagccttgt |
31749841 |
T |
|
| Q |
707 |
aaaattcatcttgtgaggtagcaaacttagaaac |
740 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
31749840 |
aaaattcatcttgtgaggtagcaaacttagaaac |
31749807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 17093042 - 17093200
Alignment:
| Q |
13 |
catcatgttttgggataaaagattatcaacaactcttttagaataaatctcaaaattaa-gtgtcccaact-taattcatgaatccgtcctaatgctaat |
110 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||||| | ||||||||| | | ||||||||| || ||||||| || |||||| | | || |
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| T |
17093042 |
catcatgtttggggataaaaatctatcaacaactcttttagaatcgagctcaaaattgacgggtcccaactctagctcatgaacccatcctaaagatgat |
17093141 |
T |
|
| Q |
111 |
agtagactaagagcttcgccaatatgaacatcacacattgagataaaccattcagtttt |
169 |
Q |
| |
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| ||||| | ||||||| |||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
17093142 |
aatagaccacgagcttcaccaatatgaacatcacacattggactaaaccattcactttt |
17093200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 9057729 - 9057796
Alignment:
| Q |
634 |
ctgcagtccttcctaatctcttgaccaccattgatgctactcattttgaccattgacttcacaaaagc |
701 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| ||||||||||| | ||| ||||| ||||||| |
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| T |
9057729 |
ctgcagtccttcctaacttcttgcccaccattgatactactcatttttatcatggacttggcaaaagc |
9057796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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