View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_10 (Length: 437)
Name: NF16797_low_10
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 37723025 - 37722637
Alignment:
| Q |
13 |
attattcttaaaaattctaactatgaagttaaataagtaagtagcatatgctcagagtatgaagaaaaagattacaagaatacgtggctagacgtatttt |
112 |
Q |
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| T |
37723025 |
attattcttaaaaattctgactatgaagttaaataagtaagtagcatatgctcagagtatgaagaaaa-gattacaagaatacgtggctagacgtatttt |
37722927 |
T |
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| Q |
113 |
gactaagaacacataacacaataatctttacaaatgaaaaaccatagtatataatataatgaaatnnnnnnnnngaacatagtataaagctgaacatggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37722926 |
gactaagaacacataacacaataatctttacaaatgaaaaaccatagtatataatataatgaaaccaaaaaaaagaacatagtataaagctgaacatggt |
37722827 |
T |
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| Q |
213 |
aataataatagttttttcaactcagagaaaaaatgaaaagaataattgagattgacaaaggagtgtagcataaattacctaatacattgtttatagtggc |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37722826 |
aataataatagttttttcaactcaaagaaaaaatgaaaagaataattgagattgacaaaggagtgtagcataaattacctaatacattgtttatagtggc |
37722727 |
T |
|
| Q |
313 |
aagagtgagcaagaacacactagtgagccatttttgaagcttcatagtttccaatccaaaagaaagagaggaaggaacagtgtagcggta |
402 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37722726 |
aagagtgagcaagaacaaactagtgagccatttttgaagcttcatagtttccaatccaaaagaaagagaggaaggaacagtgtagcggta |
37722637 |
T |
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