View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_11 (Length: 428)
Name: NF16797_low_11
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 1407654 - 1407996
Alignment:
| Q |
10 |
attattctcaggagactctattaaggaaaatttaatcaagtgtgaattaaatataagatgcaaaaaatgtgtataaaaatataccctagctactttataa |
109 |
Q |
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| T |
1407654 |
attattctcaggagactctattaaggaaaatttaatcaagtgtgaattaaatataagatgcaaaaaatgtttataaaaatataccctagctactttataa |
1407753 |
T |
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| Q |
110 |
gttcttcttatgaatggattgtatcaaatataacagtataatatattagtagaacatatccaacgagttatcttccatgttgaatgtgtgt----tatat |
205 |
Q |
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| T |
1407754 |
gttcttcttatgaatggattgtatcaaatataacagtataatatattattagaacatatccaacgagtaatcttccatgttgaatgtgtgtgtaatatat |
1407853 |
T |
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| Q |
206 |
ataagagggcaagggacaaagaatgagttgagctaacagagcgttgggaaataggtgggagtgtatggcgataacctccaatagtaggttcaaagatatt |
305 |
Q |
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| T |
1407854 |
ataagagggcaagggacaaagaatgagttgagctaacagagcgttgggaaataggt----gtgtatggcgataacctccaatagtaggttcaaagatatt |
1407949 |
T |
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| Q |
306 |
actgtaaactgaactgtatatattttgggttgtaacactgtaaacat |
352 |
Q |
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| T |
1407950 |
actgtaaactcaactgtacatattttgggttgtaacacggtaaacat |
1407996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 1408374 - 1408425
Alignment:
| Q |
351 |
ataaaacggaattataatcgttttatagttgtaagagtatgtccaattgggc |
402 |
Q |
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| T |
1408374 |
ataaaacggaattataatcgttttatagttgtaagagtatgtacaattgggc |
1408425 |
T |
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