View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_low_12 (Length: 424)

Name: NF16797_low_12
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_low_12
NF16797_low_12
[»] chr7 (3 HSPs)
chr7 (259-407)||(27658121-27658269)
chr7 (1-99)||(33602436-33602528)
chr7 (122-181)||(27656844-27656903)
[»] chr5 (5 HSPs)
chr5 (259-407)||(37605795-37605941)
chr5 (271-398)||(33360981-33361104)
chr5 (271-398)||(5742432-5742556)
chr5 (117-181)||(37606029-37606093)
chr5 (119-161)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (271-398)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (271-398)||(18085257-18085380)
chr6 (117-181)||(31559482-31559546)
[»] chr4 (1 HSPs)
chr4 (119-156)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 259 - 407
Target Start/End: Original strand, 27658121 - 27658269
Alignment:
Q  259 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 358  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658121 gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 27658220  T
Q  359 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 407  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27658221 ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtctc 27658269  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33602436 - 33602528
Alignment:
Q  1 tgttatatggcggcaaaagtgaataagaaacggttagaagtatgagctggcaaatagcgaaatagtgaaatgaaatattaaacgattaaatatgttttt 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  33602436 tgttatatggcggcaaaagtgaataagaaacgattagaagtatgagctggcaaatagc------atgaaatgaaatattaaacgattaaatatgttttt 33602528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 27656844 - 27656903
Alignment:
Q  122 aatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||    
T  27656844 aatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaata 27656903  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 259 - 407
Target Start/End: Complemental strand, 37605941 - 37605795
Alignment:
Q  259 gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct 358  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37605941 gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct 37605842  T
Q  359 ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc 407  Q
    ||||||||| |||||  |||||||||||||||||| |||| ||| ||||    
T  37605841 ttgtacagtgccacc--ctcatgctattttcggtcgctccacctatctc 37605795  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
Q  271 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 370  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 33361008  T
Q  371 accctctcatgctattttcggtcactcc 398  Q
    | |||||||||||| |||||||||||||    
T  33361007 agcctctcatgcta-tttcggtcactcc 33360981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 271 - 398
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
Q  271 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 370  Q
    |||||||| ||||||||||| ||||||||| || |||||| ||| ||||||||||||||  ||| | ||| ||||||   |||||||||||| |||| ||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc 5742528  T
Q  371 accctctcatgctattttcggtcactcc 398  Q
    ||||||||||||||||| | ||||||||    
T  5742529 accctctcatgctatttccagtcactcc 5742556  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 37606093 - 37606029
Alignment:
Q  117 acaggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 181  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  37606093 acaggaatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaata 37606029  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 30891764 - 30891806
Alignment:
Q  119 aggaatgataagtaaacacaaaaatacaaacacaaaaatgaca 161  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  30891764 aggaatgataagtgaacacaaaaatacaaacacaaaaacgaca 30891806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
Q  271 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 370  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 1255  T
Q  371 accctctcatgctattttcggtcactcc 398  Q
    | |||||||||||| |||||||||||||    
T  1254 agcctctcatgcta-tttcggtcactcc 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
Q  271 ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc 370  Q
    |||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  ||||||||||||   |||||||||||| |||| ||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc 18085284  T
Q  371 accctctcatgctattttcggtcactcc 398  Q
    | |||||||||||| |||||||||||||    
T  18085283 agcctctcatgcta-tttcggtcactcc 18085257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 31559482 - 31559546
Alignment:
Q  117 acaggaatgataagtaaacacaaaaatacaaacacaaaaatgacaccatacactattactcaata 181  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||    
T  31559482 acaggaatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaata 31559546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 7453567 - 7453604
Alignment:
Q  119 aggaatgataagtaaacacaaaaatacaaacacaaaaa 156  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7453567 aggaatgataagtgaacacaaaaatacaaacacaaaaa 7453604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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