View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_14 (Length: 396)
Name: NF16797_low_14
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 54459188 - 54459558
Alignment:
| Q |
9 |
acatcatcattcaataacttgtattttacgactagcaagaagagcaaacatactaactcaagcatatgtttaaatttcattagtttcaatttgtacattt |
108 |
Q |
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| T |
54459188 |
acatcatcattcaataacttgtattttacgactagcaagaagaacaaacatactaactcaagcatatgtttaaatttcattagtttcaatttgtacattt |
54459287 |
T |
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| Q |
109 |
tttcttagataaatttgaaaagtgaactttgttgtgtaagtagatcaacgatggtattgaaatcatttgtaggctactcctcggatccttgtgcaattaa |
208 |
Q |
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| T |
54459288 |
ttttttagataaatttgaaaagtgaactttgttgtgtaagtagatcaacgatggtattgaaatcatttgtaggctactcctcggatccctgtgcaattaa |
54459387 |
T |
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| Q |
209 |
gataacgcgatagtaaaatttgaaatgttgtgtatttgaatatgtagtgaatgttgaagtttaacatatgatgttttatttgagtatcccaatttgcagg |
308 |
Q |
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| T |
54459388 |
gataacgtgatagtaaaatttgaaatgttgtgtatttgaatatgtagtgaatgttgaagtttaacatatgatgttttatttgagtatcccaatttgcagg |
54459487 |
T |
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| Q |
309 |
ctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgatgctcctaatgatgatcct |
379 |
Q |
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| T |
54459488 |
ctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgatgctcctaatgatgatcct |
54459558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 54058399 - 54058482
Alignment:
| Q |
277 |
tgatgttttatttgagtatcccaatttgcaggctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgat |
361 |
Q |
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| T |
54058399 |
tgatgttttatctgagtatcctaatta-caggctaagccagaccttggtctcgatagtgcaaagcgaaaagcagtgacacatgat |
54058482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 54058330 - 54058377
Alignment:
| Q |
222 |
taaaatttgaaatgttgtgtatttgaatatgtagtgaatgttgaagtt |
269 |
Q |
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| T |
54058330 |
taaaatttgaaatgtagtgtatttgaacaagtagtgaatgtttaagtt |
54058377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 54058238 - 54058271
Alignment:
| Q |
151 |
gatcaacgatggtattgaaatcatttgtaggcta |
184 |
Q |
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| T |
54058238 |
gatcaacgatggtagtgaaatcatttgtaggcta |
54058271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 15039009 - 15038962
Alignment:
| Q |
222 |
taaaatttgaaatgttgtgtatttgaatatgtagtgaatgttgaagtt |
269 |
Q |
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| T |
15039009 |
taaaatttgaaatgttgtgtatttgaacatgtagtgaatgttgaagtt |
15038962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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