View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16797_low_15 (Length: 385)
Name: NF16797_low_15
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 45169348 - 45168982
Alignment:
| Q |
1 |
gctttcatctcacttcagagagttgttccccccatgtctatgctatgtttgtgatcatctactttatggaggcatgataacccaaattaatcttacttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169348 |
gctttcatctcacttcagagagttgttccctccatgtctatgctatgtttgtgatcatctactttatggaggcatgataacccaaattaatcttacttgc |
45169249 |
T |
|
| Q |
101 |
ccccgatttaactatcactctctgaatgttactccattaattttaaaccaactctacacaaacaattacatgaaaaacaaaattttatatcaatcactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169248 |
ccccgatttaactatcactctctgaatgttactccattaattttaaaccaactctacacaaacaattacatgaaaaacaaaattttatatcaatcactct |
45169149 |
T |
|
| Q |
201 |
ccttctaaacatcaaataaaatactcggtcacataccaaattatttcaatagctagaaataaaaatggtagaagggaaaaacaaattagcaacaaaagta |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169148 |
ccttctaaacatcgaataaaatactcggtcacataccaaattatttcactagctagaaataaaaatggtagaagggaaaaacaaattagcaacaaaagta |
45169049 |
T |
|
| Q |
301 |
gtgataaataaaattgaatttctctataattcggtggttactaaaacataatgctttaccaataggg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45169048 |
gtgataaataaaattgaatttctctataattcggtggttactaaaacataatgctttaccaataggg |
45168982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University