View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_17 (Length: 354)
Name: NF16797_low_17
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 37448595 - 37448265
Alignment:
| Q |
12 |
tcatcaacaattccacaacaccttcgggtaaaggaactttagttttggaacttccagaactacatttccaagtactctcctcttcatcagatgaatccat |
111 |
Q |
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| T |
37448595 |
tcatcaacaattccacaacaccttcgggtaaaggaactttagttttggaacttccagaactacatttccaagtactctcctcttcatcagatgaatccat |
37448496 |
T |
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| Q |
112 |
ttcatgacagtttttcgaagactttgaagagcttcctacatcacaatcatgactcttgttggcccttaattcttccaagtaaagcctcctaccaatttga |
211 |
Q |
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| T |
37448495 |
ttcatgacagttttttgaagactttgaagagcttcctacatcacaatcatgactcttgttggcccttaattcttccaagtaaagcctcctaccaatttga |
37448396 |
T |
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| Q |
212 |
atttctatggaaccaataaaacgaaagcagaagctacagacaaaacaatcaatctgcaaagtaaagtagaaaataagacaacgaaacaaaaacttttaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37448395 |
atttctatggaaccaataaaacgaaagcagaagctacagacaaaacaatcaatctgcaaagtaaagtagaaaataagacaacgaaacaaaaacttttaaa |
37448296 |
T |
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| Q |
312 |
atggctacacaagaacaaaaatcatgagtac |
342 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37448295 |
atggctacacaagaacaaaaatcatgagtac |
37448265 |
T |
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