View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_21 (Length: 299)
Name: NF16797_low_21
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 48673537 - 48673243
Alignment:
| Q |
1 |
atttgaaagtaagttgataatgttggtggtacatttgattaacatatc-------aaggacgaattttacaatattaatagtggtggactacgtcgatac |
93 |
Q |
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| T |
48673537 |
atttgaaagtaagttgataatgttggtggtgcatttgattaacatatctaaacagaaggacgaattttacaatattaatagtggtggattacgtcgatac |
48673438 |
T |
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| Q |
94 |
gatttcaagcaccaattttgatatttgcactgaaaattgcattaatgtccttccgttaaaaaacgacaacgaatacataaatagatgatggaaacatgaa |
193 |
Q |
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| T |
48673437 |
aatttcaagcaccaactttaatatttacactgaaaattgcattaatgtccttccgttaaaagacgacaacgaatacataaatagatgatggaaatatgaa |
48673338 |
T |
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| Q |
194 |
tatgcacagacgaccttcaaaacatgtttatttatagacaaaaataatatttatagggagaacttttgaaaattgaaacacctctctctcattct |
288 |
Q |
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| T |
48673337 |
tacgcacatacgaccttcaaaatatgtttatttatagacaaaaataatatttatagggagaattttcgaaaattgaaacacctctctctcattct |
48673243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 48673701 - 48673655
Alignment:
| Q |
1 |
atttgaaagtaagttgataatgttggtggtacatttgattaacatat |
47 |
Q |
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| T |
48673701 |
atttgaaagtaagttaataatattggtgatgcatttgattaacatat |
48673655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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