View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_low_22 (Length: 289)

Name: NF16797_low_22
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_low_22
NF16797_low_22
[»] chr4 (3 HSPs)
chr4 (8-275)||(32303271-32303533)
chr4 (25-87)||(56271366-56271428)
chr4 (18-87)||(55960706-55960774)
[»] chr3 (5 HSPs)
chr3 (8-87)||(48405416-48405495)
chr3 (8-87)||(50559198-50559277)
chr3 (9-87)||(51137023-51137101)
chr3 (19-87)||(22371197-22371265)
chr3 (19-87)||(47101528-47101596)
[»] chr8 (5 HSPs)
chr8 (18-87)||(3547156-3547225)
chr8 (18-87)||(33605074-33605143)
chr8 (43-87)||(11097142-11097186)
chr8 (55-87)||(28623144-28623176)
chr8 (55-87)||(39021476-39021508)
[»] chr5 (3 HSPs)
chr5 (19-87)||(10865323-10865391)
chr5 (18-87)||(40829420-40829489)
chr5 (55-87)||(41383387-41383419)
[»] chr7 (4 HSPs)
chr7 (8-87)||(24532929-24533008)
chr7 (52-87)||(29763836-29763871)
chr7 (8-87)||(38259069-38259148)
chr7 (18-87)||(23910247-23910316)
[»] chr6 (3 HSPs)
chr6 (8-87)||(26595355-26595433)
chr6 (32-87)||(31883314-31883369)
chr6 (18-87)||(17551375-17551444)
[»] chr2 (8 HSPs)
chr2 (8-87)||(24766158-24766237)
chr2 (32-87)||(35334526-35334581)
chr2 (54-87)||(5954515-5954548)
chr2 (54-87)||(30220842-30220875)
chr2 (55-87)||(26321730-26321762)
chr2 (55-87)||(26321898-26321930)
chr2 (55-87)||(39247496-39247528)
chr2 (8-87)||(44977486-44977566)
[»] chr1 (2 HSPs)
chr1 (8-87)||(49020390-49020469)
chr1 (54-87)||(27352636-27352669)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 32303271 - 32303533
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatcannnnnnnaattgtactttga 107  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||       |||||||||||      
32303271 gagagaaataaaaaacataatgcaagtatgtgaggaaaaattgttacaaaaattatcacaaaatagttgtacaaatatcatttttttaattgtacttt-- 32303368  T
108 tcagatcattcatctatatcttgaatacacgaaagtcatcaaaattatgaaatagtaaaggcagccaatccatccccatttttggtgacatgacaaggag 207  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32303369 ---gatcattcatctatatcttgaatacacgaaagtcatcaaaattatgaaatagtaaaggcagccaatccatccccatttttggtgacatgacaaggag 32303465  T
208 gtgctaccaattcaaggacaatgatgtcctaccaattcaaatgctaacgctttaaaattttcagggta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
32303466 gtgctaccaattcaaggacaatgatgtcctaccaattcaaatgctaacgttttaaaattttcagggta 32303533  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 56271428 - 56271366
Alignment:
25 taatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| ||| |||| |||| ||||||||||||| | ||||| ||| |||||||||    
56271428 taatgcaagtatgggagaaaaagttgtcacaaaagttatcataaaatggatgttcaaatatca 56271366  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 55960774 - 55960706
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||| |||  |||||||| |||||||||||  || ||||||| |||||||||||    
55960774 aaaaacataatgcgagtatgagagagaaaattgt-acaaaagttataccaaaatggttatacaaatatca 55960706  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 48405495 - 48405416
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||||||||||  |||||| |||  ||| |||||||||||||| ||||| |||||||||||||||||||    
48405495 gagagaaagtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatca 48405416  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 50559198 - 50559277
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  |||||||||||| ||||||| |||  |||||||| ||||||||| ||| | ||| |||||||||||||||    
50559198 gagagaaagtaaaaacataatgtaagtatgagagagaaaattgtcacaaaagttgtcaaaaaatagttgtacaaatatca 50559277  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 51137023 - 51137101
Alignment:
9 agagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||  |||||||||||| |||| || ||| |||| |||| ||||||||||| | | ||| |||||||||||||||    
51137023 agagaaagtaaaaacataatgtaagtctgagagaaaaagttgtcacaaaagttattaaaaaatagttgtacaaatatca 51137101  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 22371265 - 22371197
Alignment:
19 aaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||| |||||| ||||||| |||  |||||| ||||||||||||||||  ||||| ||| |||||||||    
22371265 aaaaaataatgtaagtatgagagagaaaattattacaaaagttatcactaaatggatgttcaaatatca 22371197  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 47101596 - 47101528
Alignment:
19 aaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||| ||||||||||| ||   ||| |||  ||||||||| ||||| |||||||||||||||||||    
47101596 aaaacatgatgcaagtatgagatagaaagttgccacaaaagttgtcacaaaatggttgtacaaatatca 47101528  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 3547156 - 3547225
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||||||| ||||||| |||  ||| |||| ||||||||||||| | | |||||||||||||||||    
3547156 aaaaacataatgtaagtatgagagataaagttgtgacaaaagttatcaaaaagtggttgtacaaatatca 3547225  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 33605074 - 33605143
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||| ||||  |||||| |||  ||||||||| |||||||||||| | ||||||||| |||||||||    
33605074 aaaaacacaatgtgagtatgagagagaaaattgttccaaaagttatcataaaatggttgttcaaatatca 33605143  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 11097142 - 11097186
Alignment:
43 aaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||| ||||||||| ||||  |||||||||||||||||||    
11097142 aaaaattgtcacaaaagttgtcactaaatggttgtacaaatatca 11097186  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 28623144 - 28623176
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
28623144 aaaagttatcacataatggttgtacaaatatca 28623176  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 39021476 - 39021508
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
39021476 aaaagttatcacaaaatggttgtacaaatatca 39021508  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 10865391 - 10865323
Alignment:
19 aaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||| ||||||| ||  ||||||||| ||||||||| ||||| |||| |||| |||||||||    
10865391 aaaacataatgtaagtatgagataaaaaattgtcacaaaagttctcacaaaatgtttgttcaaatatca 10865323  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 40829489 - 40829420
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||| ||||||  |||||| ||| ||||||||| |||||| |||| | | |||||||||||||||||||    
40829489 aaaaatataatgtgagtatgagagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatatca 40829420  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 41383387 - 41383419
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
41383387 aaaagttatcacaaaatggttgtacaaatatca 41383419  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 24532929 - 24533008
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||||||||||  |||||| ||| ||||||||| |||||| |||||| | ||| ||||| |||||||||    
24532929 gagagaaagtaaaaacataatgtgagtatgagagaaaaaattgtcacaaaaattatcagaaaatagttgttcaaatatca 24533008  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 29763871 - 29763836
Alignment:
52 tacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||||||||||| |||||||||||||||||||    
29763871 tacaaaagttatcacaaaatggttgtacaaatatca 29763836  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 38259148 - 38259069
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||||||||||  ||||||  ||  ||| |||| ||||||||||||| | |||||||||||||||||||    
38259148 gagagaaagtaaaaacataatgttagtatgaaagagaaagttgtcacaaaagttatcaaaaaatggttgtacaaatatca 38259069  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 23910247 - 23910316
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||  | |||| ||| ||| ||||| ||||||||| ||| | |||||||||||||||||||    
23910247 aaaaacataatgtgaatatgagagaaaatattgtcacaaaagttgtcaaaaaatggttgtacaaatatca 23910316  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 26595433 - 26595355
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||||||||||  |||||| ||| ||||||||||| ||||||||||| | ||| ||||| |||||||||    
26595433 gagagaaagtaaaaacataatgtgagtatgagagaaaaaattgttataaaagttatca-aaaatagttgttcaaatatca 26595355  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 31883314 - 31883369
Alignment:
32 agtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||| |||||||| |||||||||||||| ||| | | |||||||||||||||||    
31883314 agtatgagaggaaaagttgttacaaaagttgtcaaaaagtggttgtacaaatatca 31883369  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 17551375 - 17551444
Alignment:
18 aaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||  |||||| |||  ||| |||||||||||||| ||| | ||||||||| |||||||||    
17551375 aaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatca 17551444  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 24766237 - 24766158
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||| ||||||  ||||||||||  ||| |||| ||||||||||| | | |||||||||||||||||||    
24766237 gagagaaagtaaaaatataatgtgagtatgcgagataaagttgtcacaaaagttattaaaaaatggttgtacaaatatca 24766158  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 35334581 - 35334526
Alignment:
32 agtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||| ||| || |||||||||||||||||| | | |||||||||||||||||||    
35334581 agtatgagagaaagaattgttacaaaagttattataaaatggttgtacaaatatca 35334526  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 5954515 - 5954548
Alignment:
54 caaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||||||||| |||||||||||||||||||    
5954515 caaaagttatcacataatggttgtacaaatatca 5954548  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 30220842 - 30220875
Alignment:
54 caaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||||||||||||| |||||||||||||||    
30220842 caaaagttatcacagaatagttgtacaaatatca 30220875  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 26321730 - 26321762
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
26321730 aaaagttatcacaaaatggttgtacaaatatca 26321762  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 26321898 - 26321930
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
26321898 aaaagttatcacaaaatggttgtacaaatatca 26321930  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 39247496 - 39247528
Alignment:
55 aaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||||||| |||||||||||||||||||    
39247496 aaaagttatcacaaaatggttgtacaaatatca 39247528  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 44977486 - 44977566
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacaga-atggttgtacaaatatca 87  Q
    ||||||||  |||||||||||| || |||| |||  |||||||||||||||||| ||| | | ||||||||| ||||||||    
44977486 gagagaaagtaaaaacataatgtaaatatgagagagaaaattgttacaaaagttgtcaaaaagatggttgtataaatatca 44977566  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 49020390 - 49020469
Alignment:
8 gagagaaatgaaaaacataatgcaagtatgcgaggaaaaattgttacaaaagttatcacagaatggttgtacaaatatca 87  Q
    ||||||||  ||||| ||||||  |||||| ||| ||||||||| ||||||||| | | | |||||||||||||||||||    
49020390 gagagaaagaaaaaatataatgtgagtatgagagaaaaaattgtcacaaaagttgttaaaaaatggttgtacaaatatca 49020469  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 27352669 - 27352636
Alignment:
54 caaaagttatcacagaatggttgtacaaatatca 87  Q
    |||||||||||||| |||||||||||||||||||    
27352669 caaaagttatcacaaaatggttgtacaaatatca 27352636  T

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