View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_low_23 (Length: 280)

Name: NF16797_low_23
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_low_23
NF16797_low_23
[»] chr6 (2 HSPs)
chr6 (10-264)||(32095797-32096050)
chr6 (174-263)||(24176375-24176464)
[»] chr1 (3 HSPs)
chr1 (34-260)||(23265530-23265756)
chr1 (37-260)||(33907843-33908066)
chr1 (193-257)||(5212217-5212281)
[»] scaffold0015 (1 HSPs)
scaffold0015 (110-260)||(53373-53523)
[»] chr4 (1 HSPs)
chr4 (141-260)||(17779164-17779283)
[»] chr8 (3 HSPs)
chr8 (193-257)||(26382676-26382740)
chr8 (174-263)||(13524453-13524542)
chr8 (174-263)||(13613988-13614077)
[»] chr7 (1 HSPs)
chr7 (193-257)||(5633715-5633779)
[»] chr3 (3 HSPs)
chr3 (141-260)||(8086516-8086636)
chr3 (174-263)||(13501985-13502074)
chr3 (112-260)||(27502830-27502978)
[»] scaffold0006 (1 HSPs)
scaffold0006 (174-263)||(204489-204578)
[»] chr2 (1 HSPs)
chr2 (193-257)||(33348642-33348706)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 32096050 - 32095797
Alignment:
Q  10 acatcatcaagtgggtagagtgtgacattatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  32096050 acatcatcaagtgggtagagtgtgacattatccttcatccaataattattccacaccggaatagtcgtgccatcgcctattttccacttacttcctgcct 32095951  T
Q  110 taagaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgcttt 209  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  32095950 taagaataaatt-agcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacactgaagaaaatattttgcttt 32095852  T
Q  210 gtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32095851 gtaaattctagcaataagggtgtctggattcgtcataattctccacccttgtttg 32095797  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 24176464 - 24176375
Alignment:
Q  174 ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgttt 263  Q
    ||||||||||||||| || |||||||||   ||||| || |||| ||| || || |||||||| || |||| ||||||||| ||||||||    
T  24176464 ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagcgatgagtgtgtctggttttgtcaaaattctccagccttgttt 24176375  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 34 - 260
Target Start/End: Original strand, 23265530 - 23265756
Alignment:
Q  34 acattatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgccttaagaataaatttagcattgcata 133  Q
    ||||||||||||||||||||||||||| | ||||| |||   || ||||  || ||||| ||| |||| || || || ||||| |||||||  |||||||    
T  23265530 acattatccttcatccaataattattctagaccgggatagatgtaccattaccaattttccacctactaccggctttgagaatgaatttagagttgcata 23265629  T
Q  134 aactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtc 233  Q
     |||| ||||||||||||| || ||||| | || | ||| ||| ||||||||||||||  |||| ||| |||||||||||||| |||||||||| || ||    
T  23265630 tactcctccaaacaaaacttggcttatgccctatagttgcttccagaaaattacaccgcagaaagtatcttgctttgtaaattttagcaataagagtatc 23265729  T
Q  234 tggattcgtcataattctccacccttg 260  Q
     ||||| |||| ||| |||||||||||    
T  23265730 aggatttgtcaaaatcctccacccttg 23265756  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 260
Target Start/End: Original strand, 33907843 - 33908066
Alignment:
Q  37 ttatccttcatccaataattattccacaccggaatattcgtgccatcccctattttgcacttacttcctgccttaagaataaatttagcattgcataaac 136  Q
    |||||||||||||||||||||||||| ||||| |||   || ||||  || ||||| ||| | || || || || ||||| |||||||  ||||||| ||    
T  33907843 ttatccttcatccaataattattccagaccgggatagatgtaccattaccaattttccacctgctgccggctttgagaatgaatttagagttgcatatac 33907942  T
Q  137 tcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctgg 236  Q
    || ||||||||||||| || ||||| | || | ||| ||| |||||||||||||| | ||| ||| |||||||||||||| |||||||||| || || ||    
T  33907943 tcctccaaacaaaacttggcttatgccctatagttgcttccagaaaattacaccgcgaaaagtatcttgctttgtaaattttagcaataagagtatcagg 33908042  T
Q  237 attcgtcataattctccacccttg 260  Q
    ||| |||| ||| ||||| |||||    
T  33908043 atttgtcaaaatcctccatccttg 33908066  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 5212217 - 5212281
Alignment:
Q  193 ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccaccc 257  Q
    ||||||||| |||||||||| |||||||| ||||| || |  ||||| |||||||||||||||||    
T  5212217 ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccaccc 5212281  T

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Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 53373 - 53523
Alignment:
Q  110 taagaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgcttt 209  Q
    |||||||||||||||  ||||| | |||| |||| |||||||| ||||||||    | | ||| |||||  |||||||| || ||| ||||| |||| ||    
T  53373 taagaataaatttagatttgcaaatactcctccacacaaaacttggtttatgtaccaaagttgcttcaaagaaattacaacgcggataatatcttgcctt 53472  T
Q  210 gtaaattctagcaataagggtgtctggattcgtcataattctccacccttg 260  Q
     ||||| |||||||||||||  || ||||| |||||||||||||| |||||    
T  53473 ataaatcctagcaataagggattcaggattggtcataattctccaaccttg 53523  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 17779164 - 17779283
Alignment:
Q  141 ccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattc 240  Q
    |||||||||||| || |||||||||| | |||| ||||||||||| || |  |||||||| || ||||| || || ||||  || || ||||| |||||     
T  17779164 ccaaacaaaactaggattatggcttaaagttgagtcaagaaaattgcatcttggaaaatacttggctttatacatcctagagatgagcgtgtccggatta 17779263  T
Q  241 gtcataattctccacccttg 260  Q
    |||||||||||||| |||||    
T  17779264 gtcataattctccaaccttg 17779283  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 26382676 - 26382740
Alignment:
Q  193 ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccaccc 257  Q
    ||||||||| |||||||||| |||||||| ||||| || |  ||||| |||||||||||||||||    
T  26382676 ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccaccc 26382740  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 13524453 - 13524542
Alignment:
Q  174 ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgttt 263  Q
    ||||||||||||||| || |||||||||   ||||| || |||| ||| || || |||||||| || |||| ||||||||| ||||||||    
T  13524453 ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttt 13524542  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 13613988 - 13614077
Alignment:
Q  174 ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgttt 263  Q
    ||||||||||||||| || |||||||||   ||||| || |||| ||| || || |||||||| || |||| ||||||||| ||||||||    
T  13613988 ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttt 13614077  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 5633779 - 5633715
Alignment:
Q  193 ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccaccc 257  Q
    ||||||||| |||||||||| |||||||| ||||| || |  ||||| |||||||||||||||||    
T  5633779 ggaaaatatcttgctttgtacattctagctataagcgtttgaggattggtcataattctccaccc 5633715  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 8086636 - 8086516
Alignment:
Q  141 ccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtct-ggatt 239  Q
    |||||||||||| || ||||||| || | |||| ||||||||||| || |  | |||||| || ||||| |||||||||   ||||| |||||| |||||    
T  8086636 ccaaacaaaactaggattatggcctaaaattgagtcaagaaaattgcatctcgaaaaatacttggctttataaattctatagataagcgtgtctcggatt 8086537  T
Q  240 cgtcataattctccacccttg 260  Q
     |||||||||||||| |||||    
T  8086536 agtcataattctccagccttg 8086516  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 13502074 - 13501985
Alignment:
Q  174 ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgttt 263  Q
    ||||||||||||||| || |||||||||   ||||| || |||| ||| || || |||||||| || |||| ||||||||| ||||||||    
T  13502074 ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagcgatgagtgtgtctggttttgtcaaaattctccagccttgttt 13501985  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 27502830 - 27502978
Alignment:
Q  112 agaataaatttagcattgcataaactcttccaaacaaaactcggtttatggcttagacttgattcaagaaaattacaccgaggaaaatattttgctttgt 211  Q
    ||||| |||||||  || |||| |||| || |||||||||| |||||| | | |  ||||| ||| |||||||||||||  || |||||| ||| ||| |    
T  27502830 agaatgaatttagagttacatatactcctctaaacaaaacttggtttacgccctgtacttgcttctagaaaattacaccacgggaaatatcttgttttat 27502929  T
Q  212 aaattctagcaataagggtgtctggattcgtcataattctccacccttg 260  Q
    ||||| | |||||||| || || ||||| |||| ||| | |||||||||    
T  27502930 aaatttttgcaataagagtatcaggatttgtcaaaatccgccacccttg 27502978  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 204489 - 204578
Alignment:
Q  174 ttcaagaaaattacaccgaggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccacccttgttt 263  Q
    ||||||||||||||| || |||||||||   ||||| || |||| ||| || || |||||||| || |||| ||||||||| ||||||||    
T  204489 ttcaagaaaattacaacgcggaaaatatcgagctttatatattcgagctatgagtgtgtctggttttgtcaaaattctccagccttgttt 204578  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 33348706 - 33348642
Alignment:
Q  193 ggaaaatattttgctttgtaaattctagcaataagggtgtctggattcgtcataattctccaccc 257  Q
    ||||||||| |||||||||| |||||||| ||||| || |  || || |||||||||||||||||    
T  33348706 ggaaaatatcttgctttgtacattctagctataagcgtttgagggttggtcataattctccaccc 33348642  T

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