View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_24 (Length: 269)
Name: NF16797_low_24
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 13052733 - 13052492
Alignment:
| Q |
17 |
aatatgtgcccttatgtgaagaacaatggcttaggtcaacccctctcaaaaacatcatggtacacaacacaccaattcttagcggaaatgattttccatg |
116 |
Q |
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| T |
13052733 |
aatatgtgccctcatgtgaagaacaatggcttaggtcaacccctctcaaaaacatcatggtacacaacacaccaattgttagcagaaatgattttccatg |
13052634 |
T |
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| Q |
117 |
ctaggttagaaaatcacgtgtgtcgcacgtgggatccaaatcaagcaattttattctacataccattctacggtggactacacgcttcaagcatgttccg |
216 |
Q |
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| T |
13052633 |
ctaggttagaaaatcacgtgtgtcgcacgtgggatcctaatcaagcaattttattctatataccattctatggtggactacacgcgtcaagcatgttccg |
13052534 |
T |
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| Q |
217 |
cgaggcgaatcatactcttcgcgactccctagctgttcatct |
258 |
Q |
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| T |
13052533 |
cgaagcgaatcacactctccgcgactccttagccgttgatct |
13052492 |
T |
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