View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_3 (Length: 545)
Name: NF16797_low_3
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 40972403 - 40972826
Alignment:
| Q |
1 |
aattaaggatgttttgtgagacatttgcatatatcaatgttatatgtaaaggaagtggttccaacgatgaagatgatgaagaggggagacaatttataat |
100 |
Q |
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| T |
40972403 |
aattaaggatgttttgtgagacatttgcatatatcaatgttatatgtaaaggaagtggttccaacgatgaagatgatgaagaggggagataatttgtagt |
40972502 |
T |
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| Q |
101 |
atgaatttagagtttatggatcgggaaagttgataccatataaaaatgtaatcatctgatttctgatttttatgaaaaatatacaactattgtcatttgt |
200 |
Q |
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| T |
40972503 |
atgaatttagagtttatggatcgagaaagttgataccatataaatctgtaattatctgatttctga--tttatgaaaaatatacaactattgtcatttgt |
40972600 |
T |
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| Q |
201 |
caatcctattttagaaactaaacaattgctccttcaaagaaaaactaaacaattgctaatgaattgctaacaaatatttacaaatcacttgtc-nnnnnn |
299 |
Q |
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| T |
40972601 |
caatcctattttagaaactaaacaattgctccttcaa--aaaaactaaacaattgctaatgaattgctaacaaatatttacaaatcacttgtcaaaaaaa |
40972698 |
T |
|
| Q |
300 |
nntatttacaaatcaaacatgtatacgatgaatatagacatattcc---aataaaaccgtgatataaacatatcaaatatttgtagttttatgttaatta |
396 |
Q |
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| T |
40972699 |
aatatttacaaatcaaacatgtatacgatgaatataaacatattccaataataaaaccgtgatataaacatgtcaaatatttgtagttttatgttaatta |
40972798 |
T |
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| Q |
397 |
gtgttcaactcacttaatgattactttt |
424 |
Q |
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| T |
40972799 |
gagttcaactcacttaatggttactttt |
40972826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 411 - 528
Target Start/End: Original strand, 40972841 - 40972958
Alignment:
| Q |
411 |
taatgattacttttagctagatgtggattatctacatgctgccctcgtggatatagtaaattaatgttgattatgttagccaagacggtcacttggacga |
510 |
Q |
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| T |
40972841 |
taatgattacttttagctagatgtggattatctacatgctgccctcgtggatatagtaaattaatgttgattatgttagccaagacggtcacttgaacga |
40972940 |
T |
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| Q |
511 |
tcccctaaaaacaatggt |
528 |
Q |
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| T |
40972941 |
tcccctaaaaacaatggt |
40972958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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