View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_30 (Length: 239)
Name: NF16797_low_30
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5822443 - 5822223
Alignment:
| Q |
19 |
ccatcagtctctagcatatgtggtcaaagtccttgagaaatgattgaaaggtggagatttcaactggacttcatatcgtaaaacaacttaatccgtaaaa |
118 |
Q |
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| T |
5822443 |
ccatcagtctctagcatatgtggtcaaagtccttgagaaatgaatgaatggtggagatttcaaatggacttcatatagtaaaacaacttaatccataaaa |
5822344 |
T |
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| Q |
119 |
agac-ttttctataagaaataagcatcaactttgtataaataataatgttttatttaattataggtatatttaagttacattcttttcattagaattcgt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
5822343 |
agactttttctataagaaataagcatcaactttgtataaataataatgttttatttaattatatttatatttaagct-cattcttttcattagaattcgt |
5822245 |
T |
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| Q |
218 |
ttgaataatgtaattatttgtt |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
5822244 |
ttgaataatgtaattatttgtt |
5822223 |
T |
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