View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_32 (Length: 225)
Name: NF16797_low_32
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_32 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 37765740 - 37765545
Alignment:
| Q |
12 |
gagatgaacaaggttaacatgttgcactgtccctatagtactcacttctgttctgaattgtttttctccttggctaacactttccaacttcttcactgcc |
111 |
Q |
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| T |
37765740 |
gagacgaacaaggttaacatgttgcactgtccctatagtactcacttctgttctgaattgtttttctccttggctaacactttccaacttcttcactgcc |
37765641 |
T |
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| Q |
112 |
accacacttgaatcagccaatgttcctttgaaaacagaaccgaatcctcctccgcccaatttctcagagaaattcttagtcgcattttgcatatct |
207 |
Q |
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| T |
37765640 |
accacacttgaatcagccaatgttcctttgaaaacagaaccgaaacctcctcctcccaatttctcagagaaattcttagtcgcattttgcatatct |
37765545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 37800008 - 37800185
Alignment:
| Q |
17 |
gaacaaggttaacatgttgcactgtccctatagtactcacttctgttctgaattgtttttctccttggctaacactttccaacttcttcactgccaccac |
116 |
Q |
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||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| || || |||||||||||| | |||| ||||||||||| |||| |
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| T |
37800008 |
gaacaagattaacatgttgcattgtccctattatactcacttttgttctgaactgcttctctccttggctagtcccctccagtttcttcactgctaccat |
37800107 |
T |
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| Q |
117 |
acttgaatcagccaatgttcctttgaaaacagaaccgaatcctcctccgcccaatttctcagagaaattcttagtcgc |
194 |
Q |
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| T |
37800108 |
acttgaatcagctaatgctcctttgaaaacagaaccaaaaccacttcctcctaatttctcggtgaaattcttagtcgc |
37800185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 15931 - 15742
Alignment:
| Q |
18 |
aacaaggttaacatgttgcactgtccctatagtactcacttctgttctgaattgtttttctccttggctaacactttccaacttcttcactgccaccaca |
117 |
Q |
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||||||||| |||||||| || ||||| |||||||| |||||||||| || || || || |||||||||| ||||| | ||||||||||| | ||| |
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| T |
15931 |
aacaaggttgacatgttggacagtcccaatagtactaacttctgttcgaaactgcttctcgccttggctaatgctttcaagtttcttcactgctatgaca |
15832 |
T |
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| Q |
118 |
cttgaatcagccaatgttcctttgaaaacagaaccgaatcctcctccgcccaatttctcagagaaattcttagtcgcattttgcatatct |
207 |
Q |
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|||||||||| |||||||||||||| |||||||| || |||||||| || | | | || ||||||||||| || |||||||||| |||| |
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| T |
15831 |
cttgaatcaggtaatgttcctttgaagacagaaccaaaacctcctcctccgagtctatctgagaaattctttgtggcattttgcaaatct |
15742 |
T |
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