View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16797_low_5 (Length: 503)

Name: NF16797_low_5
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16797_low_5
NF16797_low_5
[»] chr3 (11 HSPs)
chr3 (18-494)||(24101306-24101782)
chr3 (18-142)||(24106037-24106159)
chr3 (22-76)||(23693832-23693886)
chr3 (22-76)||(23749183-23749237)
chr3 (255-333)||(24617106-24617184)
chr3 (22-76)||(23712272-23712326)
chr3 (22-76)||(23730728-23730782)
chr3 (18-135)||(24617560-24617675)
chr3 (22-75)||(24106818-24106871)
chr3 (18-101)||(24113423-24113505)
chr3 (267-313)||(24106605-24106651)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Complemental strand, 24101782 - 24101306
Alignment:
Q  18 ctgcatacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttcagtaacaactaatttgaaaactaatataagtatctatttat 117  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24101782 ctgcatacacaattgaattcaaccaaatcgcccccgtgtgcttctggtccttccccttcagtaacaactaatttgaaaactaatataagtatctatttat 24101683  T
Q  118 gtgctaacacatgtatttattcacaacttaattttcataaggtttaaactttaaattgggcttaatcaaaagccaagaattttcatttctatttgatagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24101682 gtgctaacacatgtatttattcacaacttaattttcataaggtttaaactttaaattgggcttaatcaaaagccaagaattttcatttctatttgatagt 24101583  T
Q  218 cagacgctgcaaaatcatcatactgtgacagaatactgtcatacaatatgatgcggagaacatagttctgaattgcggtctgaaaccgcaaactgcaggt 317  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24101582 cagacgctgcaaactcatcatactgtgacagaatactgtcatacaatatgatgcggagaacatagttctgaattgcggtctgaaaccgcaaactgcaggt 24101483  T
Q  318 gcgaccacaatataaaagcttaagatatcagtggaacaacattgcaatcacaattgcaaccaaattggccacatatactgcgttttgctaggatatcact 417  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24101482 gcgaccacaatataaaagcttaagagatcactggaacaacattgcaatcacaattgcaaccaaattggccacatatactgcgttttgctaggatatcact 24101383  T
Q  418 cacatatcagggttcaccgcataattgtaaccacaatttaaactcacaataaggaaaagaagaatttacgcctttgc 494  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24101382 cacatatcagggttcaccgcataaccgtaaccacaatttaaactcacaataaggaaaagaagaatttacgcctttgc 24101306  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 24106159 - 24106037
Alignment:
Q  18 ctgcatacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttcagtaacaactaatttgaaaactaatataagtatctatttat 117  Q
    ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||| ||||||| || |||| ||||||||| |  || |||||||||    
T  24106159 ctgcatacataattgaattcaaccaaatctccatcacgagattctggtccttcccctttagtaacatctgatttcaaaactaatgt--gtctctatttat 24106062  T
Q  118 gtgctaacacatgtatttattcaca 142  Q
    | |||||||||||||||| ||||||    
T  24106061 gcgctaacacatgtatttcttcaca 24106037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23693832 - 23693886
Alignment:
Q  22 atacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttc 76  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  23693832 atacacaatttaattcaaccaaatctccatcatgtgcttctggtccttccccttc 23693886  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23749183 - 23749237
Alignment:
Q  22 atacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttc 76  Q
    |||||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  23749183 atacacaatttaattcaaccaaatctccatcatgtgcttctggtccttccccttc 23749237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 24617106 - 24617184
Alignment:
Q  255 gtcatacaatatgatgcggagaacatagttctgaattgcggtctgaaaccgcaaactgcaggtgcgaccacaatataaa 333  Q
    ||||||||||||||||| |||||||||||||| |||||| |||| |||| |||||||||  |||| ||| |||||||||    
T  24617106 gtcatacaatatgatgcagagaacatagttctaaattgctgtctaaaactgcaaactgcgagtgcaaccgcaatataaa 24617184  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23712272 - 23712326
Alignment:
Q  22 atacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttc 76  Q
    |||||||||| |||||||||||||||||| | ||||||||| |||||||||||||    
T  23712272 atacacaatttaattcaaccaaatctccatcatgtgcttctagtccttccccttc 23712326  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 23730728 - 23730782
Alignment:
Q  22 atacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttc 76  Q
    |||||||||| |||||||||||||||||| | ||||||||| |||||||||||||    
T  23730728 atacacaatttaattcaaccaaatctccatcatgtgcttctagtccttccccttc 23730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 24617560 - 24617675
Alignment:
Q  18 ctgcatacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttcagtaacaactaatttgaaaactaatataagtatctatttat 117  Q
    |||||||||  |||||||||||||||||||||| |  | | ||| | ||||||||||| ||||||| || |||| ||||||||| |  ||  ||||||||    
T  24617560 ctgcatacatgattgaattcaaccaaatctccatcacgagattccgatccttcccctttagtaacatctgatttcaaaactaatgt--gtccctatttat 24617657  T
Q  118 gtgctaacacatgtattt 135  Q
    |||| |||||||||||||    
T  24617658 gtgccaacacatgtattt 24617675  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 24106871 - 24106818
Alignment:
Q  22 atacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttcccctt 75  Q
    |||||||||| |||||||| |||| |||||| ||||||||||||||||||||||    
T  24106871 atacacaatttaattcaactaaatttccaccatgtgcttctggtccttcccctt 24106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 24113505 - 24113423
Alignment:
Q  18 ctgcatacacaattgaattcaaccaaatctccaccgtgtgcttctggtccttccccttcagtaacaactaatttgaaaactaat 101  Q
    ||||||||| ||||||||||||||||||||||| |  ||| ||| ||||||||| ||| ||||||| || |||| |||||||||    
T  24113505 ctgcatacataattgaattcaaccaaatctccatcacgtgattccggtccttccactttagtaacatctgattt-aaaactaat 24113423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 24106651 - 24106605
Alignment:
Q  267 gatgcggagaacatagttctgaattgcggtctgaaaccgcaaactgc 313  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||||    
T  24106651 gatgcggaaaacatagttctaaattgcggtctgaaactgcaaactgc 24106605  T

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