View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16797_low_8 (Length: 457)
Name: NF16797_low_8
Description: NF16797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16797_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 27 - 438
Target Start/End: Complemental strand, 5429289 - 5428870
Alignment:
| Q |
27 |
gactcaaagtcaatataaacatacaaattaaatcaagggaaaaaa--taaataattaagaagatgataagaaataagaatttcaaaacggagcttttccc |
124 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5429289 |
gactcaaagtcaatataaacatacaaattaaatccagggaaaaaaaataaataaataagaagatgataagaaataagaatttcaaaacggagcttttccc |
5429190 |
T |
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| Q |
125 |
tctcacatccataaac------catagattttgaaaatgtacaagtaacactgaaaatcacattcgaagctttcagcaaaaattcacaatggacaagaag |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5429189 |
tctcacatccataaacataaaccatagattttgaaaatgtacaagtaacactgaaaatcacattcgaagctttcagcaaaaattcacaatggacaagaag |
5429090 |
T |
|
| Q |
219 |
ctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaaaatcctctaaatcctctctcaaaaccctaattcatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5429089 |
ctttgttcatctctcaattcttcaccacaagaattcatctctttagccacaaccctaaccttaaaatcctctaaatcctctctcaaaaccctaattcatt |
5428990 |
T |
|
| Q |
319 |
caatcaaaccctcttccaatctcatttcttcactccctccctctctctacgaatctatcaccatcacaatccaatccttcctcaatcttctcgaattgaa |
418 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5428989 |
caatcaaaccctcttccaatctcatttcttctctccctccctctctctacgaatctatcaccaccacaatccaatccttcctcaatcttctcgaattgaa |
5428890 |
T |
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| Q |
419 |
caattccgaaaatccccaaa |
438 |
Q |
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|||||||||||||||||||| |
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| T |
5428889 |
caattccgaaaatccccaaa |
5428870 |
T |
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