View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_1 (Length: 886)
Name: NF16798_high_1
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 118 - 853
Target Start/End: Complemental strand, 1252661 - 1251924
Alignment:
| Q |
118 |
tgtattattttatgaataa-ggttcttccttctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
213 |
Q |
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| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
|
| Q |
214 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgta |
313 |
Q |
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| T |
1252561 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgtgttgcattttctgttttgaaataatatactgta |
1252462 |
T |
|
| Q |
314 |
agaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatcttttcaaaaattgcttga |
413 |
Q |
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| T |
1252461 |
agaatgttcaacctatcttttacaagacaaatcttg--aagtaaattaaaaaactatatgccaatattaattgaaaaacatctttttaaaaattgcttga |
1252364 |
T |
|
| Q |
414 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtnnnnnnnntgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252363 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
1252264 |
T |
|
| Q |
514 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
613 |
Q |
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| T |
1252263 |
tttctgggtgacgatatgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagtt |
1252164 |
T |
|
| Q |
614 |
accgtgatgcacacagtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgagagtgtgttgtttgaagct |
713 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||| |
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| T |
1252163 |
accgcgatgcacacggtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagcacacaggcagccagcgagagtgtggagtttgaagct |
1252064 |
T |
|
| Q |
714 |
gccgctggagcacataggaatggtggtggttggcaatatgacactagagattcttttagaaacactgaaagggactttttgaatatgttgtgttcacctc |
813 |
Q |
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| T |
1252063 |
gccgctggagcacataggaatggtggtggttggcaatatgacactagagattcttttagaaacactgcaagggactttttgaatatgttgtgtgcacctc |
1251964 |
T |
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| Q |
814 |
aaatcttggattaattagcaaatttgaggaacacaaaagc |
853 |
Q |
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| T |
1251963 |
aaatcttggattaattagcaagtttgaggaacacaaaagc |
1251924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 886
Target Start/End: Complemental strand, 1251797 - 1251764
Alignment:
| Q |
853 |
cacagccaataatattccacaatcagtaaagcac |
886 |
Q |
| |
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| T |
1251797 |
cacagccaataatattccacaatcagtaaagcac |
1251764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 49 - 853
Target Start/End: Complemental strand, 42019519 - 42018701
Alignment:
| Q |
49 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttccttc |
148 |
Q |
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| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
|
| Q |
149 |
tatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaacaaccatat |
245 |
Q |
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| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaacaaccatat |
42019320 |
T |
|
| Q |
246 |
gatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
345 |
Q |
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|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42019319 |
gatggtacttggtatcaaagtgcttgtt--aatgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
42019222 |
T |
|
| Q |
346 |
ctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatct-------tttcaaaaattgcttgataaacttattttgacatgttttaaa |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
42019221 |
ctttttaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaa |
42019122 |
T |
|
| Q |
439 |
gggatgtttgatgataacaatggtnnnnnnnntgacttggacaat----------gattgcatgtgggaatatgatggtgaaagttttctgggtgacgat |
528 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42019121 |
gggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgtgaaggattgcatgtgggaatatgatgctgaaagttttctgggtgacgat |
42019022 |
T |
|
| Q |
529 |
atgggggagaattattacgacgatcatctgttgaaatcgtccactaggcttacgctgtaagaggagaagttgcagacttgcagttaccgtgatgcacaca |
628 |
Q |
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|||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42019021 |
atgggggagaattatttcaacgatcatctgttgaaaccgaccactaggcttacgctgtaagagaagaagttgcagacttgcagttaccgcgatgcacacg |
42018922 |
T |
|
| Q |
629 |
gtgtcagtgtggcaggagctgaactgctggtaaagcagttgccggcagtacacaggcagtcagtgagagtgtgttgtttgaagctgccgctggagcacat |
728 |
Q |
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| T |
42018921 |
gtgtca-tgtggcaggagctgaactgct-gtaaagcagttgccggcagcacacaggcagccagt--gagtgtggagtttgaagctgctgctggagcacat |
42018826 |
T |
|
| Q |
729 |
aggaatggtggtggttggcaatatgacactagagattcttttagaaacactgaaagggactttttgaatatgttgtgttcacctcaaatcttggattaat |
828 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42018825 |
aggaatggtggtggttggcaatatgacactagagattctttgagaaacactgcaagggactttttgaatatgttgtgtgcacctcaaatcttggattaat |
42018726 |
T |
|
| Q |
829 |
tagcaaatttgaggaacacaaaagc |
853 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
42018725 |
tagcaagtttgaggaacacaaaagc |
42018701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 886
Target Start/End: Complemental strand, 42018577 - 42018544
Alignment:
| Q |
853 |
cacagccaataatattccacaatcagtaaagcac |
886 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
42018577 |
cacagccaataatattccacaatcagtaaagcac |
42018544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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