View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_10 (Length: 599)
Name: NF16798_high_10
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Original strand, 32266558 - 32267128
Alignment:
| Q |
13 |
gataatactacaaatacaagtcaaaactatgaagtttaaaaatatcttttttgcgttcattgccttgggtttatgcgtcgtatatattttatccttcttt |
112 |
Q |
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| T |
32266558 |
gataacactacaaatacaagtcaaaactatgaagtttaaaaatatcttttttgcgttcattgccttgggtttatgtgtcttatatattttatccttcttt |
32266657 |
T |
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| Q |
113 |
ttcattgtaagaccaatggcaaggtttatcattcaaagaacaccaattggaaaacctttgaaagaaatttatgttgtctttgttcttttgggtgttctaa |
212 |
Q |
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| T |
32266658 |
ttcattgtaagaccaatggcaaggtttatcattcaaagaacaccaattggaaaacctttgaaagaaatctatgttgtctttgttcttttgggtgttctaa |
32266757 |
T |
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| Q |
213 |
ttatggtagctattagcgacgcgcttggtttacattttgttataggacctattctttttggtttggcaatgcctaatggacctcccttggcaacaacgat |
312 |
Q |
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| T |
32266758 |
ttatggtagctattagcgacgcgcttggtttacattttgttataggacctattctttttggtttggcaatgcctaatggacctcccttggcaacaacaat |
32266857 |
T |
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| Q |
313 |
agtagagaaaagtgaactaatcgtccaagaattgcttatgccatttttcttctcatacattggcataacaacaaatttaaaaggaattgccaaaaattgg |
412 |
Q |
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| T |
32266858 |
agtagagaaaagtgaactaatcgtccaagaattgcttatgccatttttcttctcatacattggcataacaacaaatttaaaaggaattgccaaaaattgg |
32266957 |
T |
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| Q |
413 |
aaggtggtgtttgtatttcagagtatcttatttgttgggttcttggcaaaggttcttgcatgcgtctttgttgcaccaacgtataatatgaggcgcaaac |
512 |
Q |
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| T |
32266958 |
aaggtggtatttgtatttcagagtatcttatttgttgggttcttggcaaaggttcttgcatgcgtctttgttgcaccaacgtataatatgaggcgcaaac |
32267057 |
T |
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| Q |
513 |
atggcttcgtgcttggccttatattaaacatcaagggcatcatggaactaatattttttgctagacaaaga |
583 |
Q |
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| T |
32267058 |
atggcttcgtgcttggccttatattaaacatcaagggcatcatggaactaatattttttgctagacaaaga |
32267128 |
T |
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