View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_high_12 (Length: 562)
Name: NF16798_high_12
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Complemental strand, 42122126 - 42121729
Alignment:
| Q |
15 |
atgaacagactaatatactcacacttgtcaatattatactccaattgtcatgcaaataaataaaatttaagaattaaaatatctgaggccagccttaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42122126 |
atgaacagactaatatactcacacttgtcaatattatactccaattgtcatgcaaataaataaaatttaagaattaaaatatctgaggccagccttaaac |
42122027 |
T |
|
| Q |
115 |
tactgtcctatccttcaatttggcagaaattcatgagcaagccaagacaatgaatggtcatactcaaaattcatctataaaattaagattactatcatag |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42122026 |
tactgtcctaaccttcaatttggcagaaattcatgagcaagccaagacaatgaatggtcatactcaaaattcatctataaaattaagattactatcatag |
42121927 |
T |
|
| Q |
215 |
aatttgtaaccagaaatcaagataaagc-nnnnnnnntaaataaataatggtgaaccttctggcactccttgtccaattaatcgagcttttttaccagtc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42121926 |
aatttgtaaccagaaatcaagataaagcaaaaaaaaaaaaaaaaagaatggtgaaccttctggcactccttgtccaattaatcgagcttttttaccagtc |
42121827 |
T |
|
| Q |
314 |
tgctccaaagcttcagtcatggtttttaccggtgttgaaccaagaatcctaacaacctgattgctcaaatccacctccacgttcttgattcctataaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42121826 |
tgctccaaagcttcagtcatggtttttaccggtgttgaaccaagaatcctaacaacctgattgctcaaatccacctccacgttcttgattcctataaa |
42121729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University