View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_18 (Length: 457)
Name: NF16798_high_18
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 6498985 - 6498562
Alignment:
| Q |
16 |
tgaacaaaatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagta |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| | |
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| T |
6498985 |
tgaacaaaatggtgagcaatagaattcggctccgccgtagaggcctcaatccaagctcaggctagagatcaaagagccctgaaattattgtaagaaagga |
6498886 |
T |
|
| Q |
116 |
agaaatgtctaattgattcgacatcaccacaactgcagattgagtagtttgannnnnnnatcatcccgcatcctttggaacataatttacttgttgtata |
215 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
6498885 |
agaaatgtctaact-attcgacatcaccacaactgcagattgagtagtttgatttttttataatcccgcatcctttgaaacataatttacttgttgtata |
6498787 |
T |
|
| Q |
216 |
gattaaatgttgaatcacaagtggagctcaggggatcaccctcattgatccaagagcaaccacataagtgagaaagacgtcatactttaagccaaaacct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
6498786 |
gattaaatgttgaatcacaagtggagctcaggggatcaccctcattggtccaagagcaaccacataagtgaaaaagacgtcataccttaagccaaaacct |
6498687 |
T |
|
| Q |
316 |
taaagcattggatttatgtgtcttctcacatataaagtgttcaattttcacttattcaaacaatataggacttctaactcacctcacacttaccattaca |
415 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6498686 |
taaagcattgggtttatgtgtcttctcacatataaagtgttcaattttcacttattcaaacaatataggacttctaaatcacctcacacttaccattaca |
6498587 |
T |
|
| Q |
416 |
ctaaagtaccaaaatacacctaagt |
440 |
Q |
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| T |
6498586 |
ctaaagtaccaaaatacacctaagt |
6498562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 22403609 - 22403710
Alignment:
| Q |
9 |
agtgagatgaacaaaatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaa |
108 |
Q |
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||||| ||| |||| |||||||| |||| ||||||||||||| |||||| | |||||||||||||| ||| |||| | ||||||||||||| | ||||| |
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| T |
22403609 |
agtgaaatggacaacatggtcagaaatacaattcggctccgctgtagagactccaatccaagctcggactaaagactatagagccctgaaacaaatgcaa |
22403708 |
T |
|
| Q |
109 |
ga |
110 |
Q |
| |
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|| |
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| T |
22403709 |
ga |
22403710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 45085186 - 45085314
Alignment:
| Q |
19 |
acaaaatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaactattgcaagaaagtaaga |
118 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||| || || | |
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| T |
45085186 |
acaaaatggtcagaaatagaatttggctctgccgtagagaccccaatccaagctcggactagagaccaaagagccctgaatcaattgcaagagaggaaca |
45085285 |
T |
|
| Q |
119 |
aatgtctaattgattcgacatcaccacaa |
147 |
Q |
| |
|
||||||||| |||||| || || |||||| |
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| T |
45085286 |
aatgtctaactgattcaacgtctccacaa |
45085314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 1188610 - 1188693
Alignment:
| Q |
268 |
agagcaaccacataagtgagaaagacgtcatactttaagccaaaaccttaaagcattggatttatgtgtcttctcacatataaa |
351 |
Q |
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| T |
1188610 |
agagcaaccacataagtgagagagacgccacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaa |
1188693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37943149 - 37943066
Alignment:
| Q |
16 |
tgaacaaaatggtcagcaatagaattcggctccgccgtagaggcctcaatccaagctcgggctagagaccaaagagccctgaaac |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||| |
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| T |
37943149 |
tgaacaaaatggtcatcaatagaattcggctccgccgtagaaacc-caatccaagctcggactagagaccaaagagccctaaaac |
37943066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 33773350 - 33773280
Alignment:
| Q |
290 |
agacgtcatactttaagccaaaaccttaaagcattggatttatgtgtcttctcacatataaagtgttcaat |
360 |
Q |
| |
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|||| ||| ||||||| |||||| |||||| |||| |||||||| ||| |||||||||||||| ||||||| |
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| T |
33773350 |
agacctcacactttaacccaaaatcttaaaacattagatttatgggtcctctcacatataaagcgttcaat |
33773280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 28855797 - 28855893
Alignment:
| Q |
310 |
aaaccttaaagcattggatttatgtgtcttctcacatataaagtgttcaattttcacttattcaaacaatataggacttctaactcacctcacactt |
406 |
Q |
| |
|
||||||||| ||||| |||||||| | | | |||| |||||||| |||| ||||||| | ||| |||| | ||||||||||||||||||||||| |
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| T |
28855797 |
aaaccttaaggcattagatttatgaggcatgtcacttataaagtactcaaccttcacttttccaagcaatgtcagacttctaactcacctcacactt |
28855893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 36572127 - 36572064
Alignment:
| Q |
296 |
catactttaagccaaaaccttaaagcattggatttatgtgtcttctcacatataaagtgttcaa |
359 |
Q |
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|||||| ||| |||||||||||| ||| |||||||||| ||||||| || ||||| |||||||| |
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| T |
36572127 |
catactctaacccaaaaccttaaggcaatggatttatgggtcttcttacttataaggtgttcaa |
36572064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 23630380 - 23630311
Alignment:
| Q |
328 |
tttatgtgtcttctcacatataaagtgttcaattttcacttattcaaacaatataggacttctaactcac |
397 |
Q |
| |
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|||||| ||| |||||| |||||||||||||| |||||||| | || |||| ||| ||||||||||||| |
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| T |
23630380 |
tttatgagtcgtctcacttataaagtgttcaactttcacttttgtaagcaatgtagtacttctaactcac |
23630311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 2336726 - 2336669
Alignment:
| Q |
302 |
ttaagccaaaaccttaaagcattggatttatgtgtcttctcacatataaagtgttcaa |
359 |
Q |
| |
|
|||| |||||| ||||| |||||| ||||||| ||| |||||| |||||||||||||| |
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|
| T |
2336726 |
ttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaa |
2336669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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