View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_22 (Length: 416)

Name: NF16798_high_22
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_22
NF16798_high_22
[»] chr1 (3 HSPs)
chr1 (18-396)||(30760270-30760647)
chr1 (251-300)||(44734754-44734804)
chr1 (250-297)||(27640981-27641029)
[»] chr4 (4 HSPs)
chr4 (250-295)||(47812098-47812143)
chr4 (250-295)||(34403187-34403232)
chr4 (249-297)||(1310488-1310536)
chr4 (251-299)||(27979993-27980041)
[»] scaffold0137 (1 HSPs)
scaffold0137 (251-295)||(21921-21965)
[»] chr7 (10 HSPs)
chr7 (250-297)||(42670530-42670577)
chr7 (250-297)||(24518490-24518538)
chr7 (250-295)||(2688125-2688171)
chr7 (250-283)||(27262206-27262239)
chr7 (250-283)||(27269076-27269109)
chr7 (250-295)||(35471577-35471622)
chr7 (250-298)||(10385778-10385826)
chr7 (250-297)||(26760813-26760861)
chr7 (251-287)||(34711112-34711148)
chr7 (250-297)||(36391386-36391434)
[»] chr8 (7 HSPs)
chr8 (250-296)||(4021678-4021724)
chr8 (250-287)||(13986750-13986788)
chr8 (250-295)||(14395759-14395805)
chr8 (249-295)||(36194270-36194316)
chr8 (250-295)||(33129258-33129303)
chr8 (249-292)||(558105-558149)
chr8 (250-297)||(41926057-41926105)
[»] chr5 (2 HSPs)
chr5 (250-297)||(37446159-37446207)
chr5 (251-287)||(31125350-31125386)
[»] chr3 (5 HSPs)
chr3 (250-297)||(30577681-30577729)
chr3 (250-297)||(3918548-3918595)
chr3 (250-297)||(21483747-21483794)
chr3 (250-283)||(49363821-49363854)
chr3 (250-297)||(54279502-54279550)
[»] chr6 (2 HSPs)
chr6 (250-283)||(6263726-6263759)
chr6 (250-297)||(33023493-33023541)
[»] chr2 (3 HSPs)
chr2 (250-287)||(3021628-3021665)
chr2 (253-297)||(39146362-39146407)
chr2 (250-297)||(15976264-15976312)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 30760647 - 30760270
Alignment:
Q  18 ctatgatggatccgcccctgattagttagatcagtagattcattagtatatgcctaaattaagataagtataagtttgcttacattagaatgtttattaa 117  Q
    ||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||    
T  30760647 ctatggtggattcgcccctgattagttagatgagtaaattcattagtatatgcccaaattaagataagtataagcttgctcacattagaatggttattaa 30760548  T
Q  118 tctgtgaattgtcatattctctttgacctttaattataagacaattttaaaatgtttgcttgtccataattataaaacactcaacaaatttttaaataca 217  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  30760547 ttcgtgaattgtcatattctctttgacctttaattataagacaattttaaaatgtttgctcgtccataatta-aaaaccctcaacaaatttttaaataca 30760449  T
Q  218 tttattattcatttccaaatattaacactatagttaaatatgtttttatctctataaatatatcaactttgtgttttaatatatccnnnnnnnttcttcg 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  30760448 tttattattcatttccaaatattaacactatggttaaatatgtttttatctctataaatatatcaactttgtgttttaatatatccaaaaaaattcttcg 30760349  T
Q  318 agtttactctcctaaaatatttgcatcatcacttttggtcactgcctttatgtcaactctcgtgtagtcttcatatttt 396  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||   ||||||||||    
T  30760348 agtttattctcctaaaatatttgcatcatcacatttgatcactgccttgaagtcaactctcgtgtaacattcatatttt 30760270  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 44734804 - 44734754
Alignment:
Q  251 ttaaatatgttttta-tctctataaatatatcaactttgtgttttaatata 300  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  44734804 ttaaatatgtttttagtctctataaatatttcaactttttgttttaatata 44734754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 27640981 - 27641029
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||| ||||| ||| ||||||||||||||||||| |||||||||    
T  27640981 gttaaatatatttttgatccctataaatatatcaactttttgttttaat 27641029  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 47812098 - 47812143
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||    
T  47812098 gttaaatatgtttttgtctctataaatatatcaactttttgtttta 47812143  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 34403232 - 34403187
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||||    
T  34403232 gttaaatatgttttaatccctataaatatatcaactttttgtttta 34403187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 1310488 - 1310536
Alignment:
Q  249 agttaaatatgtttttatctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||||||| |||||||||||| || ||| |||||||||    
T  1310488 agttaaatatgtttttatccctataaatatataaaatttttgttttaat 1310536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 27980041 - 27979993
Alignment:
Q  251 ttaaatatgtttttatctctataaatatatcaactttgtgttttaatat 299  Q
    |||||| ||||||| |||||||||||||||||| |||  ||||||||||    
T  27980041 ttaaatttgtttttgtctctataaatatatcaattttccgttttaatat 27979993  T

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Target: scaffold0137 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 21965 - 21921
Alignment:
Q  251 ttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  21965 ttaaatatgtttttgtctctataaatatatcaactttttgtttta 21921  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 42670530 - 42670577
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  42670530 gttaaatatgtttttgtctctataaatatatcaacttttcgttttaat 42670577  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 24518490 - 24518538
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  24518490 gttaaatatgtttttgatccctataaatatatcaactttttgttttaat 24518538  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 2688125 - 2688171
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgtttta 295  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  2688125 gttaaatatgtttttgatccctataaatatatcaactttttgtttta 2688171  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 27262206 - 27262239
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaa 283  Q
    ||||||||||||||||||| ||||||||||||||    
T  27262206 gttaaatatgtttttatctttataaatatatcaa 27262239  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 27269076 - 27269109
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaa 283  Q
    ||||||||||||||||||| ||||||||||||||    
T  27269076 gttaaatatgtttttatctttataaatatatcaa 27269109  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 35471577 - 35471622
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    ||||| |||||||||||| |||||||||| |||||||| |||||||    
T  35471577 gttaattatgtttttatccctataaatatgtcaactttttgtttta 35471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 10385826 - 10385778
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgttttaata 298  Q
    |||||||||  |||||||| |||||||||||||||||| | ||||||||    
T  10385826 gttaaatataattttatctttataaatatatcaactttttattttaata 10385778  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 26760861 - 26760813
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||||||||| |||||||||||||||||| |||  ||||||||    
T  26760861 gttaaatatgtttttagtctctataaatatatcaatttttcgttttaat 26760813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 34711112 - 34711148
Alignment:
Q  251 ttaaatatgtttttatctctataaatatatcaacttt 287  Q
    |||||||||||||||| | ||||||||||||||||||    
T  34711112 ttaaatatgtttttatatttataaatatatcaacttt 34711148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 36391386 - 36391434
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||| |||||| |||||||||||||||||||||| | |||||||    
T  36391386 gttaaatatatttttagtctctataaatatatcaactttttattttaat 36391434  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 4021724 - 4021678
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgttttaa 296  Q
    |||||||||||||||||| ||||||||||||||||||| | ||||||    
T  4021724 gttaaatatgtttttatccctataaatatatcaactttttattttaa 4021678  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 13986788 - 13986750
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaacttt 287  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  13986788 gttaaatatgtttttagtctctataaatatatcaacttt 13986750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 14395805 - 14395759
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgtttta 295  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  14395805 gttaaatatgtttttgatccctataaatatatcaactttttgtttta 14395759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 36194316 - 36194270
Alignment:
Q  249 agttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    |||||||||||||||||||  ||||||||||||||| || |||||||    
T  36194316 agttaaatatgtttttatccttataaatatatcaacattttgtttta 36194270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 33129303 - 33129258
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgtttta 295  Q
    ||||||||||||||| || ||||||||||| ||||||| |||||||    
T  33129303 gttaaatatgtttttgtccctataaatataccaactttttgtttta 33129258  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 558149 - 558105
Alignment:
Q  249 agttaaatatgttttta-tctctataaatatatcaactttgtgtt 292  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||    
T  558149 agttaaatatgtttttaatctctataagtatatcaactttttgtt 558105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 41926105 - 41926057
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||||    
T  41926105 gttaaatatgtttttagtctctataaatatgtcaacttttcgttttaat 41926057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 37446207 - 37446159
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  37446207 gttaaatatgtttttgatctctataaatatttcaactttttgttttaat 37446159  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 31125350 - 31125386
Alignment:
Q  251 ttaaatatgtttttatctctataaatatatcaacttt 287  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31125350 ttaaatatgtttttatccatataaatatatcaacttt 31125386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 30577729 - 30577681
Alignment:
Q  250 gttaaatatgttttt-atctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  30577729 gttaaatatgtttttgatctctataaatatatcaacttttcgttttaat 30577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 3918595 - 3918548
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||| ||| |||||||||||||||||| | |||||||    
T  3918595 gttaaatatgtttttgtctttataaatatatcaactttttattttaat 3918548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 21483747 - 21483794
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaactttgtgttttaat 297  Q
    ||||||||||||||||||  ||||||||| |||||||| |||||||||    
T  21483747 gttaaatatgtttttatccttataaatatttcaactttttgttttaat 21483794  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 49363854 - 49363821
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaa 283  Q
    |||||||| |||||||||||||||||||||||||    
T  49363854 gttaaataagtttttatctctataaatatatcaa 49363821  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 54279502 - 54279550
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||||||||  || ||||||||||||||||||| |||||||||    
T  54279502 gttaaatatgtttttggtccctataaatatatcaactttttgttttaat 54279550  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 6263759 - 6263726
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaa 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  6263759 gttaaatatgtttttgtctctataaatatatcaa 6263726  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 33023493 - 33023541
Alignment:
Q  250 gttaaatatgttttta-tctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||||||||| || |||||||||||||||||||  ||||||||    
T  33023493 gttaaatatgtttttagtccctataaatatatcaacttttcgttttaat 33023541  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 3021665 - 3021628
Alignment:
Q  250 gttaaatatgtttttatctctataaatatatcaacttt 287  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  3021665 gttaaatatgttttaatctctataaatataccaacttt 3021628  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 39146362 - 39146407
Alignment:
Q  253 aaatatgttttt-atctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||    
T  39146362 aaatatgtttttgatctctataaatatgtcaactttttgttttaat 39146407  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 15976312 - 15976264
Alignment:
Q  250 gttaaatatgtttttat-ctctataaatatatcaactttgtgttttaat 297  Q
    |||||||||| |||||| |||||||||||| |||||||| |||||||||    
T  15976312 gttaaatatgattttattctctataaatatttcaactttttgttttaat 15976264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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