View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_23 (Length: 405)
Name: NF16798_high_23
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Complemental strand, 17914981 - 17914602
Alignment:
| Q |
20 |
acctcaagcatgcgccatggacgattaggagcagatattg---atattgttccctcaaaatttgagcatctctttgaagaattgtctttcttcaaagagt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17914981 |
acctcaagcatgcgccatggacgattaggagcagatagagcagatattgttccctcaaaatttgagcatctctttgaagaattgtctttcttcaaagagt |
17914882 |
T |
|
| Q |
117 |
gtttaattctcaatccagaattccatttattcttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17914881 |
gtttaattctcaatccagaattccatttattcttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataata |
17914782 |
T |
|
| Q |
217 |
cacaacatcgaaagccatgttcttctccgccaattccacagcctcggtaacagatttttctgctactttagtggcagcaccaaacttctgccggcagatt |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
17914781 |
cacaacatcgaaagccatgttcttctccgccaattccacagcctcggtaacagatttttctgctattttagtggcagcaccaaacttctgccggtggatt |
17914682 |
T |
|
| Q |
317 |
ccaacagaggtcgtttcagttccagttctagttgattttttcatgaaaactaaggagtcgccgccaatcagtttcttctc |
396 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17914681 |
ccaacagagatcgtttcggttccagttctagttgattttttcatgaaaactaaggagtcgccgccaatcagtttcttctc |
17914602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 17976187 - 17976473
Alignment:
| Q |
20 |
acctcaagcatgcgccatggacgattaggagcagatattg---atattgttccctcaaaatttgagcatctctttgaagaattgtctttcttcaaagagt |
116 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||| || |||||| |||| |
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| T |
17976187 |
acctcaagcatccgccatggacaattaggagcagatagagcagatattgttccctcaaattttgagcatctctttgaagaatcgtaattcttcgaagaaa |
17976286 |
T |
|
| Q |
117 |
gtttaattctcaatccagaattccatttattcttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataata |
216 |
Q |
| |
|
||| |||||||| |||| | |||| || | ||||| |||||||||||||| || |||| ||| ||||||| ||||||||||| ||| || |||||||| |
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|
| T |
17976287 |
gttcaattctcactccaagactccaactaatattcattgcatcctccacaactttggcatcaacaacaaaattacaccaacctttagccgttggataata |
17976386 |
T |
|
| Q |
217 |
cacaacatcgaaagccatgttcttctccgccaattccacagcctcggtaacagatttttctgctactttagtggcagcaccaaactt |
303 |
Q |
| |
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|||||| || ||||||| |||||| |||||||||||||| ||||| |||| |||||||||| || |||| ||| |||||||||| |
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| T |
17976387 |
cacaacttcaaaagccaagttcttatccgccaattccactgcctccgtaaacgatttttctgttatcttagcagcaccaccaaactt |
17976473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 25225544 - 25225440
Alignment:
| Q |
149 |
ttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataatacacaacatcgaaagccatgttcttctccgcca |
248 |
Q |
| |
|
||||||||||| || ||| |||||||| || |||||||||| |||||| ||| || ||||||||||||||||| || || ||||||||||||||| |
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| T |
25225544 |
ttcatggcatcgtcaacagtcttagcatccaccacaaaatcacgccaaccactagctgtcggataatacacaacatcaaatgctgtgttcttctccgcca |
25225445 |
T |
|
| Q |
249 |
attcc |
253 |
Q |
| |
|
||||| |
|
|
| T |
25225444 |
attcc |
25225440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 25289700 - 25289596
Alignment:
| Q |
149 |
ttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataatacacaacatcgaaagccatgttcttctccgcca |
248 |
Q |
| |
|
||||||||||| || ||| |||||||| || |||||||||| |||||| ||| || ||||||||||||||||| || || ||||||||||||||| |
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| T |
25289700 |
ttcatggcatcgtcaacagtcttagcatccaccacaaaatcacgccaaccactagctgtcggataatacacaacatcaaatgctgtgttcttctccgcca |
25289601 |
T |
|
| Q |
249 |
attcc |
253 |
Q |
| |
|
||||| |
|
|
| T |
25289600 |
attcc |
25289596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 253
Target Start/End: Original strand, 25727704 - 25727808
Alignment:
| Q |
149 |
ttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataatacacaacatcgaaagccatgttcttctccgcca |
248 |
Q |
| |
|
||||||||||| || ||| |||||||| || |||||||||| |||||| ||| || ||||||||||||||||| || || ||||||||||||||| |
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|
| T |
25727704 |
ttcatggcatcgtcaacagtcttagcatccaccacaaaatcacgccaaccactagctgtcggataatacacaacatcaaatgctgtgttcttctccgcca |
25727803 |
T |
|
| Q |
249 |
attcc |
253 |
Q |
| |
|
||||| |
|
|
| T |
25727804 |
attcc |
25727808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 8823930 - 8823686
Alignment:
| Q |
20 |
acctcaagcatgcgccatggacgattaggagcagatattg---atattgttccctcaaaatttgagcatctctttgaagaattgtctttcttcaaagagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | | ||||||| |||| |||| ||| |||||||||||||||| || ||||||||||| |
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|
| T |
8823930 |
acctcaagcatgcgccatggacgattaggagctgagagagcggatattgtacccttaaaaactgaccatctctttgaagaatcctcattcttcaaagaaa |
8823831 |
T |
|
| Q |
117 |
gtttaattctcaatccagaattccatttattcttcatggcatcctccacaaccttagcattaactacaaaatcacaccaaccttcagcagtaggataata |
216 |
Q |
| |
|
||||||| ||| |||| ||||||| ||| ||||||| |||||||| |||||||| |||| || ||||||||||| | |||||| | ||||||| ||| |
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|
| T |
8823830 |
atttaattttcattccacaattccagttaatcttcattgcatcctcaacaaccttggcatccaccacaaaatcacaaaacccttcaaccgtaggatgata |
8823731 |
T |
|
| Q |
217 |
cacaacatcgaaagccatgttcttctccgccaattccacagcctc |
261 |
Q |
| |
|
| |||| || ||||| |||||||| | |||||| ||||| ||||| |
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|
| T |
8823730 |
ctcaacttcaaaagcgatgttcttattcgccaactccactgcctc |
8823686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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