View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_24 (Length: 382)
Name: NF16798_high_24
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 34302318 - 34302115
Alignment:
| Q |
22 |
ttttgaaccagtgttccctattgtcccagagaaatattggactgataccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgagattaag |
121 |
Q |
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| T |
34302318 |
ttttgaaccggtgttccccattattccagaaaaatattggattgatactatagaagcttacaaatgtgtgaaatcacatctaaagaaggtcgagattacg |
34302219 |
T |
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| Q |
122 |
ggcttcaagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaagatgacg |
221 |
Q |
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| T |
34302218 |
ggcttcaagagaactaaaaatgagctttgtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagtatcaatttacttaaaggtgacg |
34302119 |
T |
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| Q |
222 |
tgaa |
225 |
Q |
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|||| |
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| T |
34302118 |
tgaa |
34302115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 34281194 - 34281047
Alignment:
| Q |
66 |
ataccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaagggaactagaaatgagcttagtgtgattacttactt |
165 |
Q |
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| T |
34281194 |
atactatagaagcttacaaatgtgtgaaatcacatctaaagaaggtcgagattacgggcttcaagggaactagaaatgagcttaatg-gattacttactt |
34281096 |
T |
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| Q |
166 |
cctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaa |
214 |
Q |
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| T |
34281095 |
cctcattcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
34281047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 34289687 - 34289591
Alignment:
| Q |
233 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
329 |
Q |
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| T |
34289687 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 34289826 - 34289718
Alignment:
| Q |
127 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaagatgacgtgaaa |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34289826 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggaggccttaagaaagatgagcatcaatttacttaaagatgacatgaaa |
34289727 |
T |
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| Q |
227 |
gaagaggct |
235 |
Q |
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| T |
34289726 |
gaagaggct |
34289718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 34296831 - 34296717
Alignment:
| Q |
17 |
cagtattttgaaccagtgttccctattgtcccagagaaatattggactgataccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgaga |
116 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34296831 |
cagttttttgaaccagtgttccctattatcccagagaaatattggattgatactatagaagcttacaaatgtgtgaaatcacatctaaaaaaggttgaga |
34296732 |
T |
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| Q |
117 |
ttaagggcttcaagg |
131 |
Q |
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| T |
34296731 |
ttaagggcttcaagg |
34296717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 34302074 - 34301978
Alignment:
| Q |
233 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
329 |
Q |
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| T |
34302074 |
gctagatctttactgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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