View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_31 (Length: 333)

Name: NF16798_high_31
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_31
NF16798_high_31
[»] chr5 (23 HSPs)
chr5 (95-299)||(36744860-36745064)
chr5 (94-281)||(34751057-34751241)
chr5 (151-299)||(26459616-26459763)
chr5 (112-296)||(43144488-43144673)
chr5 (112-303)||(5069761-5069955)
chr5 (112-303)||(7607257-7607456)
chr5 (123-272)||(5568963-5569112)
chr5 (138-272)||(33824755-33824889)
chr5 (95-301)||(25818997-25819204)
chr5 (127-270)||(980159-980302)
chr5 (9-79)||(36745052-36745122)
chr5 (11-79)||(43144676-43144744)
chr5 (214-299)||(22536882-22536966)
chr5 (112-200)||(29669996-29670084)
chr5 (11-79)||(34751002-34751070)
chr5 (209-272)||(35676348-35676409)
chr5 (124-253)||(39509128-39509257)
chr5 (130-201)||(17076635-17076706)
chr5 (189-299)||(36633907-36634018)
chr5 (33-79)||(25819192-25819238)
chr5 (28-79)||(5069958-5070009)
chr5 (112-176)||(11079888-11079952)
chr5 (112-176)||(18475960-18476024)
[»] chr4 (24 HSPs)
chr4 (145-316)||(36247735-36247905)
chr4 (145-303)||(4377156-4377313)
chr4 (113-302)||(2813910-2814098)
chr4 (145-303)||(33517949-33518107)
chr4 (112-253)||(2158600-2158740)
chr4 (95-189)||(36247904-36247997)
chr4 (112-272)||(1111950-1112109)
chr4 (101-189)||(33518106-33518194)
chr4 (9-79)||(36247985-36248055)
chr4 (9-79)||(4377394-4377464)
chr4 (11-79)||(2158743-2158811)
chr4 (101-169)||(4377331-4377400)
chr4 (189-250)||(50723219-50723279)
chr4 (125-272)||(52849743-52849883)
chr4 (237-301)||(1758191-1758255)
chr4 (240-303)||(2185131-2185194)
chr4 (94-180)||(25023212-25023295)
chr4 (9-47)||(33518220-33518258)
chr4 (11-67)||(1112124-1112180)
chr4 (231-303)||(51070316-51070388)
chr4 (263-303)||(54054727-54054767)
chr4 (21-79)||(2814102-2814160)
chr4 (14-79)||(25023160-25023225)
chr4 (243-303)||(21161523-21161583)
[»] chr3 (35 HSPs)
chr3 (101-298)||(24309801-24309995)
chr3 (115-303)||(26285820-26286010)
chr3 (112-303)||(7856416-7856609)
chr3 (94-299)||(36475391-36475593)
chr3 (94-300)||(23778178-23778386)
chr3 (112-211)||(38572987-38573086)
chr3 (124-218)||(52308859-52308953)
chr3 (146-253)||(36478213-36478319)
chr3 (189-302)||(25032174-25032286)
chr3 (97-178)||(36478025-36478106)
chr3 (162-271)||(30136536-30136644)
chr3 (162-271)||(30142665-30142773)
chr3 (162-271)||(30146087-30146195)
chr3 (144-234)||(395922-396013)
chr3 (117-201)||(25070719-25070803)
chr3 (117-201)||(26903171-26903255)
chr3 (117-201)||(36617785-36617869)
chr3 (9-79)||(36477965-36478035)
chr3 (11-79)||(7856612-7856680)
chr3 (240-296)||(8034690-8034746)
chr3 (161-271)||(6714413-6714522)
chr3 (13-79)||(26285748-26285814)
chr3 (148-195)||(23794964-23795011)
chr3 (231-305)||(19832040-19832114)
chr3 (123-201)||(35502474-35502552)
chr3 (112-178)||(4137266-4137332)
chr3 (249-299)||(38572546-38572596)
chr3 (239-299)||(11640615-11640676)
chr3 (31-76)||(23778376-23778421)
chr3 (263-302)||(7729036-7729075)
chr3 (9-67)||(24310001-24310059)
chr3 (239-299)||(52309319-52309376)
chr3 (231-272)||(35504219-35504260)
chr3 (11-52)||(52308816-52308857)
chr3 (11-55)||(36475604-36475648)
[»] chr8 (30 HSPs)
chr8 (114-303)||(44873205-44873393)
chr8 (124-301)||(29866084-29866262)
chr8 (112-303)||(7681359-7681549)
chr8 (98-272)||(10381372-10381543)
chr8 (113-299)||(32161390-32161573)
chr8 (112-272)||(29841163-29841323)
chr8 (127-269)||(24556915-24557056)
chr8 (132-218)||(11993687-11993773)
chr8 (11-79)||(29866278-29866346)
chr8 (148-303)||(34696984-34697147)
chr8 (126-269)||(2148338-2148481)
chr8 (195-297)||(6978410-6978511)
chr8 (124-250)||(43421484-43421612)
chr8 (117-201)||(45486203-45486287)
chr8 (11-79)||(10381534-10381602)
chr8 (9-79)||(44873398-44873468)
chr8 (239-299)||(11995259-11995319)
chr8 (113-200)||(33235575-33235662)
chr8 (95-259)||(7388109-7388271)
chr8 (135-201)||(11463188-11463254)
chr8 (96-192)||(6802742-6802836)
chr8 (114-178)||(31235847-31235911)
chr8 (169-221)||(35990865-35990917)
chr8 (240-290)||(18075735-18075785)
chr8 (11-79)||(6802685-6802753)
chr8 (11-79)||(24556829-24556897)
chr8 (95-198)||(43421633-43421733)
chr8 (232-271)||(6802833-6802872)
chr8 (112-178)||(16863289-16863354)
chr8 (183-234)||(36051251-36051303)
[»] scaffold0002 (2 HSPs)
scaffold0002 (95-269)||(461308-461479)
scaffold0002 (20-79)||(461261-461320)
[»] chr2 (19 HSPs)
chr2 (112-303)||(32032894-32033084)
chr2 (112-272)||(7700290-7700448)
chr2 (112-298)||(34878635-34878821)
chr2 (112-218)||(34190030-34190136)
chr2 (95-272)||(18703639-18703802)
chr2 (112-272)||(27447700-27447859)
chr2 (123-271)||(38417741-38417889)
chr2 (95-188)||(3357071-3357161)
chr2 (189-303)||(11562085-11562195)
chr2 (242-303)||(6141383-6141444)
chr2 (117-201)||(4075463-4075547)
chr2 (11-79)||(32033087-32033155)
chr2 (240-303)||(18458700-18458763)
chr2 (240-301)||(2081771-2081832)
chr2 (222-271)||(16639303-16639351)
chr2 (130-201)||(16639187-16639258)
chr2 (240-299)||(40372657-40372716)
chr2 (242-302)||(34189937-34189997)
chr2 (112-175)||(10498685-10498748)
[»] chr6 (20 HSPs)
chr6 (131-272)||(16461644-16461784)
chr6 (104-271)||(6689160-6689323)
chr6 (123-299)||(1975259-1975435)
chr6 (189-296)||(2919958-2920062)
chr6 (117-218)||(14607764-14607864)
chr6 (112-210)||(21883269-21883367)
chr6 (132-218)||(33704118-33704205)
chr6 (117-234)||(30702683-30702801)
chr6 (117-201)||(18816933-18817017)
chr6 (116-234)||(30705281-30705394)
chr6 (117-195)||(24901708-24901786)
chr6 (242-303)||(14607865-14607926)
chr6 (242-302)||(17848977-17849037)
chr6 (239-299)||(35187963-35188023)
chr6 (169-212)||(35188059-35188102)
chr6 (155-228)||(8150815-8150889)
chr6 (20-69)||(30705105-30705154)
chr6 (241-299)||(21883172-21883230)
chr6 (20-79)||(30705401-30705460)
chr6 (11-67)||(14607688-14607744)
[»] chr1 (29 HSPs)
chr1 (112-297)||(8064906-8065090)
chr1 (94-303)||(27464238-27464444)
chr1 (112-252)||(9539609-9539748)
chr1 (145-250)||(10781246-10781350)
chr1 (95-181)||(10781149-10781235)
chr1 (236-292)||(39299269-39299325)
chr1 (9-79)||(10781091-10781161)
chr1 (236-302)||(10781365-10781431)
chr1 (11-64)||(34912438-34912491)
chr1 (11-71)||(9539538-9539598)
chr1 (183-272)||(23347807-23347896)
chr1 (10-79)||(25031058-25031127)
chr1 (117-201)||(1017013-1017097)
chr1 (231-303)||(43909379-43909451)
chr1 (231-302)||(9516769-9516840)
chr1 (244-303)||(41006120-41006179)
chr1 (112-182)||(23353428-23353498)
chr1 (231-279)||(281150-281198)
chr1 (11-71)||(8065101-8065161)
chr1 (11-71)||(9477746-9477806)
chr1 (220-272)||(34912306-34912357)
chr1 (236-303)||(9539762-9539829)
chr1 (113-167)||(43175393-43175447)
chr1 (112-180)||(14230103-14230171)
chr1 (255-303)||(25031004-25031052)
chr1 (231-303)||(35438903-35438975)
chr1 (112-175)||(34912362-34912424)
chr1 (263-302)||(36420497-36420536)
chr1 (33-79)||(27464205-27464251)
[»] chr7 (38 HSPs)
chr7 (95-303)||(33941617-33941814)
chr7 (112-272)||(30074624-30074785)
chr7 (112-261)||(46090191-46090339)
chr7 (145-270)||(34346836-34346960)
chr7 (112-234)||(2945391-2945515)
chr7 (95-218)||(38300355-38300480)
chr7 (134-303)||(32221853-32222024)
chr7 (112-270)||(27080371-27080525)
chr7 (112-270)||(27197776-27197930)
chr7 (95-212)||(24658433-24658547)
chr7 (112-253)||(25232916-25233057)
chr7 (126-234)||(39785485-39785594)
chr7 (112-206)||(1691663-1691757)
chr7 (9-79)||(30074551-30074621)
chr7 (144-261)||(26824465-26824584)
chr7 (117-201)||(39781006-39781090)
chr7 (113-201)||(43265938-43266026)
chr7 (112-271)||(36906214-36906368)
chr7 (113-200)||(10512049-10512140)
chr7 (231-303)||(7899404-7899476)
chr7 (214-282)||(49143946-49144013)
chr7 (240-303)||(10702661-10702724)
chr7 (24-79)||(24658535-24658590)
chr7 (231-302)||(26050085-26050156)
chr7 (153-215)||(40716950-40717013)
chr7 (240-302)||(10703218-10703280)
chr7 (169-272)||(16841044-16841145)
chr7 (9-77)||(2945318-2945386)
chr7 (239-303)||(24657898-24657962)
chr7 (231-279)||(26059467-26059515)
chr7 (11-79)||(33941562-33941629)
chr7 (11-79)||(38300299-38300367)
chr7 (240-299)||(1691539-1691598)
chr7 (240-297)||(48089170-48089227)
chr7 (112-230)||(26787268-26787387)
chr7 (231-303)||(2945846-2945915)
chr7 (15-64)||(1691775-1691824)
chr7 (231-260)||(18942679-18942708)
[»] scaffold0311 (1 HSPs)
scaffold0311 (112-271)||(839-993)
[»] scaffold0535 (1 HSPs)
scaffold0535 (131-270)||(9625-9762)
[»] scaffold0051 (1 HSPs)
scaffold0051 (124-176)||(13371-13423)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 95 - 299
Target Start/End: Complemental strand, 36745064 - 36744860
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  36745064 accgtcttgtaacttatatatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggatataagacgattttaa 36744965  T
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaa-ttttagctccacatgtacctaaagtctg 293  Q
    ||||||| |||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36744964 ttgtaatttattgtatcaaacaatattatttctta-cttttaatatagtttgcattattgtttctttaaaatttttagctccacatgtacctaaagtctg 36744866  T
Q  294 gatccg 299  Q
     |||||    
T  36744865 aatccg 36744860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 34751057 - 34751241
Alignment:
Q  94 aaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttc 193  Q
    ||||||||||||||||| |||||  |||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||| || | |||| |||||||    
T  34751057 aaccgttttgtaacttatatata--aagagatgtaattttaacaattagcaatgatgtcattttagctcattttcaacaaatagacacgagatgattttc 34751154  T
Q  194 attgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgt 281  Q
    ||| ||||||||||||||| ||||| ||| |||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||    
T  34751155 attttaatgtattgtatcaaacaatgttacttctta-tttttaatataatttgcattattgtttctttgaaattttagccccacatgt 34751241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 26459763 - 26459616
Alignment:
Q  151 tcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcatt 250  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||| ||||||||     
T  26459763 tcattttagctcattttcaacaaatggataggacacgattttcattgtaatgtattgtatcaaacaatgttctttcttat-ttttaatatggtttgcata 26459665  T
Q  251 attgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  26459664 attgtttctttgaaattttagctcaacatgtacctaaagtctcgatccg 26459616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 43144673 - 43144488
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacg--attttcattgtaatgtattgta 209  Q
    ||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||| |  ||||||||||||||||||||||    
T  43144673 atatagaaaaagatgttcttttaacaattaacaaagatgtcactttagctcattttcaacaaatggattggagaagaaattttcattgtaatgtattgta 43144574  T
Q  210 tcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggat 296  Q
    ||| ||||| |||||||||| ||| ||||||||||||||| ||| ||| ||| ||| |||||| |||||| |||| |||||||||||    
T  43144573 tcaaacaatgttatttctta-tttataatatagtttgcataattttttttttgaaagtttagccccacatataccaaaagtctggat 43144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 5069955 - 5069761
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgt----attg 207  Q
    ||||| ||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||| || |||||| |||||||||||||| ||    ||||    
T  5069955 atatataaagagatgttattttaacaattaacaatgatatcattttaactcattttcaacaaatagacatgagatgattttcattgtaacgtattaattg 5069856  T
Q  208 tatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||| |||| || ||||||||||| || |||| ||||| ||||    
T  5069855 tatcaaacaatattacttctta-tttttaatatagtttacattattgtttctttaaattttttgccccacatgtaccaaatgtctagatccacccc 5069761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 7607257 - 7607456
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  7607257 atatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaatgtattgtatc 7607356  T
Q  212 agac--------aatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    | ||        |||| ||||| |   ||   || |||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  7607357 aaacaatgaggtaataatatttttcgattaaaaaaatagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatccacccc 7607456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 5569112 - 5568963
Alignment:
Q  123 tatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatatt 221  Q
    ||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||  |||| ||    
T  5569112 tatgttcttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaattgtattgcatcaaccaatgtt 5569013  T
Q  222 atttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  5569012 atttctta-tttttaatatagtttgcattattttttcttttaaattttagc 5568963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 272
Target Start/End: Original strand, 33824755 - 33824889
Alignment:
Q  138 attaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttatttttta 236  Q
    |||| ||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| || |||| ||||| |||||||||| ||||||    
T  33824755 attagcaatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaattgtactgcatcaaacaatgttatttctta-ttttta 33824853  T
Q  237 atatagtttgcattattgtttctttaaaattttagc 272  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33824854 atatattttgcattattgtttctttaaaattttagc 33824889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 301
Target Start/End: Complemental strand, 25819204 - 25818997
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  || | | |||||||||||||||||  |||  ||| | || ||||||||| |||||||||||||||||| ||||| |||||||    
T  25819204 accgtcttgtaacttatgtagaaatagatatgttcttttaactgttagtaataaagttattttagcttattttcaacaaatggataggagacaattttca 25819105  T
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcat--tattgtttctttaaaattttagctccacatgtacctaaagtct 292  Q
    | |||||||||||| ||| ||||| ||||||| || ||||||||||||||| |||  |||| ||||||| |||||||||| ||||||||||| || ||||    
T  25819104 tcgtaatgtattgtttcaaacaatgttatttccta-tttttaatatagtttacattatattttttctttgaaattttagccccacatgtaccaaatgtct 25819006  T
Q  293 ggatccgcc 301  Q
     ||||||||    
T  25819005 agatccgcc 25818997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 980159 - 980302
Alignment:
Q  127 ttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattattt 225  Q
    ||||||||| | ||||||||||||| |||||||  |||||||||||||| ||||  ||| |||||| ||||||| ||||||  |||| ||||| ||||||    
T  980159 ttcttttaatagttaacaatgatgttattttagtacattttcaacaaatagataatagatgatttttattgtaattgtattacatcaaacaatgttattt 980258  T
Q  226 cttattttttaatatagtttgcattattgtttctttaaaatttta 270  Q
    |||| ||||||||||| ||||||||||| |||||| |||||||||    
T  980259 ctta-tttttaatataatttgcattattatttcttcaaaatttta 980302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36745122 - 36745052
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||||||||| |||||||    
T  36745122 gatatgaaagttgtgaagagtaacatatgtaacaaaatgggtgatcggtggctaaatgaccgtcttgtaac 36745052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 43144744 - 43144676
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||    
T  43144744 tatgaaaggtgtaaagagtaacctatgtaacaaaatgggtgaccaatgactaaatgactgtcttgtaac 43144676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 22536966 - 22536882
Alignment:
Q  214 acaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    ||||| ||||||||| ||||| |||| ||||||||||||||||||||||||| |||||  ||||||||| | ||||||||||||||    
T  22536966 acaatgttatttcttcttttt-aatacagtttgcattattgtttctttaaaaatttagtcccacatgtatcaaaagtctggatccg 22536882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 29670084 - 29669996
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa 200  Q
    ||||||||| | |||||||||||||||||| |||| |||| ||||||||| ||||||||||||||  ||  |||| |||||||||||||    
T  29670084 atatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatgattagaagacaattttcattgtaa 29669996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 34751002 - 34751070
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| |||||||||||||| |||||||||||||| |||||  ||||||||| |||||||||||||    
T  34751002 tatgaaagttgtgaagagtaacccatgtaacaaaatggatgatcggtggctaaataaccgttttgtaac 34751070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 35676348 - 35676409
Alignment:
Q  209 atcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  35676348 atcatacaatattatttcttatttt-taatatagtttgcattatt-tttctttgaaattttagc 35676409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 39509257 - 39509128
Alignment:
Q  124 atgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat-gtattgtatcagacaatatta 222  Q
    |||||||||||| ||| | |||   ||| |||| || ||||||||||||||| |||   |||| |||||||||||||| ||||||||||| ||||| |||    
T  39509257 atgttcttttaaaaatcagcaacattgttatttcagttcattttcaacaaattgatggaagacaattttcattgtaattgtattgtatcaaacaatgtta 39509158  T
Q  223 tttcttattttttaatatagtttgcattatt 253  Q
    | ||||| ||||| ||||| |||||||||||    
T  39509157 tatctta-tttttcatataatttgcattatt 39509128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 17076635 - 17076706
Alignment:
Q  130 ttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||| ||||||| || |||||| ||| |||||||||||||||||||| ||   |||||||||||||||||||    
T  17076635 ttttcacaattagcactgatgttattctagctcattttcaacaaatgaatggtagacgattttcattgtaat 17076706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 36633907 - 36634018
Alignment:
Q  189 ttttcattgtaatgtattgtatcagacaatattatttcttattttttaatata---gtttgcattattgtttctttaaaattttagctccacatgtacct 285  Q
    |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||    |||| ||||||| |||||| ||| |||||| |||||| ||       
T  36633907 ttttcattgtaatgtattgtatcaaacaatgttattactta-tttttaatataattatttgtattattg-ttctttgaaaatttagccccacatatatta 36634004  T
Q  286 aaagtctggatccg 299  Q
    ||||||||||||||    
T  36634005 aaagtctggatccg 36634018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 25819238 - 25819192
Alignment:
Q  33 ctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  25819238 ctatgtaaccaaatgggagatcaatggctaaatgaccgtcttgtaac 25819192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 5070009 - 5069958
Alignment:
Q  28 gtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||||||||||||||||| |||||| | |||||||| ||| ||||||||||    
T  5070009 gtaacctatgtaacaaaattggtgattagtggctaaacgactgttttgtaac 5069958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 11079888 - 11079952
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatg 176  Q
    ||||| ||||| ||||||||  ||||||||| |||||| | ||||||  ||||||||||||||||    
T  11079888 atataaaaagagatgttcttagaacaattaataatgatatgattttatttcattttcaacaaatg 11079952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 18475960 - 18476024
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatg 176  Q
    ||||||||||| ||||||||  ||||||||  ||| || | ||||||| ||||||||||||||||    
T  18475960 atatagaaagagatgttcttagaacaattagtaattatataattttagttcattttcaacaaatg 18476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 145 - 316
Target Start/End: Complemental strand, 36247905 - 36247735
Alignment:
Q  145 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  36247905 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcaaacaatatgaattcttattttttaatatagtt 36247806  T
Q  245 tgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccccagcgtgtgtgttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  36247805 tgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg-ccctgcgtgtgtgttt 36247735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 4377313 - 4377156
Alignment:
Q  145 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtt 244  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  4377313 atgatgtcattttaactcattttcaacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttat-ttttaatatagtt 4377215  T
Q  245 tgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  4377214 tgcattattgtttctttgaaattatagctccacatgtacctaaagtctggatctgcccc 4377156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 113 - 302
Target Start/End: Complemental strand, 2814098 - 2813910
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatca 212  Q
    |||||||| ||||| | |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2814098 tatagaaatatatgatgttttaacaataagcaatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgtaatgtattgtatca 2813999  T
Q  213 gacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
     ||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||| ||||||||    
T  2813998 aacaattttatttcata-tttttaatatagtttgcattattgtttctttgaaattttagctccatatataccaaaagtctgaatccgccc 2813910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 33518107 - 33517949
Alignment:
Q  145 atgatgtcattttagctcatttt-caacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagt 243  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  33518107 atgatgtcattttagctcatttttcgacaaatggatataagacgattttcattgtaatgtattgtatcaaacaatattatttcttat-ttttaatataat 33518009  T
Q  244 ttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||| ||||||||||||||||||||||| |||| ||| ||||||| |||| ||||||||||    
T  33518008 ttgtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccgcccc 33517949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 2158740 - 2158600
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| || ||||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2158740 atatagaaagagatcttcttttaacaattagcaatgatattattttagctcattttcaacaaatggataggagacgattttcattgtaatgtattgtatc 2158641  T
Q  212 agacaatattatttcttattttttaatatagtttgcattatt 253  Q
    | ||||| ||||||||||| ||||||||||||||||||||||    
T  2158640 aaacaatgttatttcttat-ttttaatatagtttgcattatt 2158600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 36247997 - 36247904
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  36247997 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctca-tttcaacaaatggataaaagacgat 36247904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 272
Target Start/End: Complemental strand, 1112109 - 1111950
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtat 210  Q
    ||||||||| | |||||||||||||||||||||| || || ||||||| |||||||||||||||||||| ||||| ||||| ||||||| ||||| | ||    
T  1112109 atatagaaatacatgttcttttaacaattaacaacgaggttattttagatcattttcaacaaatggataagagacaattttgattgtaattgtatcgcat 1112010  T
Q  211 cagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    || ||||| |||||||||| || |||||| ||||||||||||| |||| || ||||||||||    
T  1112009 caaacaatgttatttctta-ttattaata-agtttgcattattatttcattgaaattttagc 1111950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 33518194 - 33518106
Alignment:
Q  101 ttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgat 189  Q
    |||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||||||    
T  33518194 ttgtaacttatatatagaaatagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggatagaagacgat 33518106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36248055 - 36247985
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||    
T  36248055 gatatgaaaggtgtgaagagtaacctatttaacaaaatggatgatcagtggctaaatgaccgttttgtaac 36247985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 4377464 - 4377394
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  4377464 gatatgaaagttgtgaagagtaacctatgtaacaaaatgggtgatcagtggctaaatgatcgtcttgtaac 4377394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 2158811 - 2158743
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  2158811 tatgaaagttgtgaagagtaacctatgtaacaaaatgggtgattgatggctaaatgaccgtcttgtaac 2158743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 4377400 - 4377331
Alignment:
Q  101 ttgtaacttacatatagaaagat-atgttcttttaacaattaacaatgatgtcattttagctcattttca 169  Q
    |||||||||| ||||||||| |  ||||||||| |||||||| |||||||||||||||||||||||||||    
T  4377400 ttgtaacttatatatagaaaaaagatgttctttaaacaattagcaatgatgtcattttagctcattttca 4377331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 50723219 - 50723279
Alignment:
Q  189 ttttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcatt 250  Q
    |||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||    
T  50723219 ttttcattgtaatgtattatatcaaacaatgttatttctta-tttttaatatagtttgcatt 50723279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 272
Target Start/End: Original strand, 52849743 - 52849883
Alignment:
Q  125 tgttcttttaacaattaacaatgatgtcattttagctcatttt--caacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatatta 222  Q
    |||||| |||||||||| ||||||| | |||||||  ||| ||  |||||||| |||| || || |||||||||||||| |||||||| | |||||        
T  52849743 tgttctcttaacaattatcaatgatattattttagtccatattatcaacaaattgataggaaaccattttcattgtaatatattgtattaaacaat---- 52849838  T
Q  223 tttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
        ||||||| |||||||||||| |||||||||||||||||||||||||    
T  52849839 ----ttatttt-taatatagtttgtattattgtttctttaaaattttagc 52849883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 1758255 - 1758191
Alignment:
Q  237 atatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcc 301  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||| ||  ||| ||||||||    
T  1758255 atatagtttacattattgtttctttgaaattttagccccacatgtaccaaatatctagatccgcc 1758191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 2185194 - 2185131
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||  ||||| ||| ||| ||||||||||||||||| |||||||||| ||||||||||||    
T  2185194 tagtttgagttattatttatttgaaattttagctccacatatacctaaagtttggatccgcccc 2185131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 25023212 - 25023295
Alignment:
Q  94 aaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggata 180  Q
    |||||| ||||||||||  |||||||| | |||||||||||||||||| ||||||| | |||||||| |||||| ||||||| ||||    
T  25023212 aaccgtcttgtaactta--tatagaaatagatgttcttttaacaattagcaatgat-ttattttagcgcattttaaacaaatagata 25023295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 33518258 - 33518220
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatg 47  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33518258 gatatgaaagttgtgaagagtaacctatgtaacaaaatg 33518220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 1112180 - 1112124
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatga 67  Q
    |||||||| |||||||||  | |||||||||||||||| |||||||||| |||||||    
T  1112180 tatgaaagttgtgaagagccaactatgtaacaaaatggatgatcaatggttaaatga 1112124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 51070388 - 51070316
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||||||| |||||||| || ||||||||| | |||||| |||  || || ||||||||||||    
T  51070388 tttttaatatagtttgcaatattgttttttcaaaattttaaccccacatatactaaatgtttggatccgcccc 51070316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 54054727 - 54054767
Alignment:
Q  263 aaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  54054727 aaattttagctccatatgtacttaaagtctggatccgcccc 54054767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 2814160 - 2814102
Alignment:
Q  21 gtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||||||||||||| ||| ||| |||||| |  |||||||||||| |||||||    
T  2814160 gtgaagagtaacctatgtaataaactggatgatcagtaactaaatgaccgtattgtaac 2814102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 25023160 - 25023225
Alignment:
Q  14 gaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||| |||||| ||| | |||||||||||||||  |||||| ||||||||| ||||| |||||||    
T  25023160 gaaagttgtgaaaagtcaactatgtaacaaaatgaatgatcagtggctaaataaccgtcttgtaac 25023225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 21161523 - 21161583
Alignment:
Q  243 tttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||||||||||| |||||||| || |||||||| | ||  ||| ||||||||||    
T  21161523 tttgcattattgtttctttgaaattttaacttcacatgtatcaaatatctagatccgcccc 21161583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 101 - 298
Target Start/End: Complemental strand, 24309995 - 24309801
Alignment:
Q  101 ttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa 200  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||| |||||  || |||||||||||||||||| |||||||||||||||||||    
T  24309995 ttgtaacttacata--gaaagagatgttcttttaacaattaacaatgatgtgattttgacttattttcaacaaatggataggagacgattttcattgtaa 24309898  T
Q  201 tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatcc 298  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  24309897 tgtattgtatcaaacaatattatttcttat-ttttaatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 26285820 - 26286010
Alignment:
Q  115 tagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcaga 214  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |    
T  26285820 tagaaagatatgttcttttaacaattagcaatgatgtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgtattgtatcaaa 26285919  T
Q  215 caatattatttcttattttttaatatagtttgcattattg---tttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||| |||||||||| ||||||||||||||||||||||||   ||| ||| |||||| ||| |||||| || ||||||||||||||||||||    
T  26285920 caatgttatttctta-tttttaatatagtttgcattattgctatttttttgaaatttaagccccacatatatctaaagtctggatccgcccc 26286010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 7856609 - 7856416
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||||    
T  7856609 atatagaaagagatgttcttttaacaattaacaatgacgtcattttagctcatttttaacaaatggataggagacgatttttattataatgtattgtatc 7856510  T
Q  212 agacaatattatt-tcttattttttaatatagtttgcattattgtttctttaaaattttagctccaca-tgtacctaaagtctggatccgcccc 303  Q
    | |||||||| || | ||  ||||||||||| ||||||||||||||||||| |||||||||||||| | | ||||||||||| |||||||||||    
T  7856509 aaacaatatttttatttttatttttaatataatttgcattattgtttctttgaaattttagctccaaattatacctaaagtccggatccgcccc 7856416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 299
Target Start/End: Complemental strand, 36475593 - 36475391
Alignment:
Q  94 aaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttc 193  Q
    |||||| ||||||||||  |||| ||||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||  ||||||||||||    
T  36475593 aaccgtcttgtaactta--tataaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttc 36475496  T
Q  194 attgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctg 293  Q
    |||||| |||||||||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||| | |||||| |||| ||| |||     
T  36475495 attgtagtgtattgtatcaaacaatgttatttcttat-ttttaatatagtttgcgttattgtttctttgaaattttaaccccacatataccaaaaatcta 36475397  T
Q  294 gatccg 299  Q
    ||||||    
T  36475396 gatccg 36475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 94 - 300
Target Start/End: Complemental strand, 23778386 - 23778178
Alignment:
Q  94 aaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttc 193  Q
    ||||||||||| |||||  |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||     
T  23778386 aaccgttttgttactta--tatagaaagagatgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggataagagaccattttt 23778289  T
Q  194 attgtaa-----tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaa 288  Q
    |||||||     |||||||||||| ||||| |||||||||| |||||||||||||||| |||||| ||||||| ||| |||| || || || || | |||    
T  23778288 attgtaatgtaatgtattgtatcaaacaatgttatttctta-tttttaatatagtttgtattattttttctttgaaaatttaacttcaaatatatcaaaa 23778190  T
Q  289 gtctggatccgc 300  Q
    ||||||||||||    
T  23778189 gtctggatccgc 23778178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 38573086 - 38572987
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  38573086 atatagaaagagatgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaatgcattgtatc 38572987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 52308859 - 52308953
Alignment:
Q  124 atgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaat 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||    
T  52308859 atgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaatgtagtgtatcaaacaat 52308953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 36478213 - 36478319
Alignment:
Q  146 tgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagttt 245  Q
    ||||||||||||| ||||||||||||||||||||   |||| ||||| ||||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  36478213 tgatgtcattttaactcattttcaacaaatggatcaaagacaattttaattgtaacgtattgtatcaaacaatattatttctta-tttttaatatagttt 36478311  T
Q  246 gcattatt 253  Q
    ||| ||||    
T  36478312 gcaatatt 36478319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 25032174 - 25032286
Alignment:
Q  189 ttttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaa 288  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||||||| || |||||||||||||| |||| ||| |||||| ||||||||| | |||    
T  25032174 ttttcattgtaatgtattgtatcaaacaatgttatttctta-tttttaatgtaatttgcattattgttcctttgaaaatttagccccacatgtatcaaaa 25032272  T
Q  289 gtctggatccgccc 302  Q
    |||| |||||||||    
T  25032273 gtctagatccgccc 25032286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 36478025 - 36478106
Alignment:
Q  97 cgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatgga 178  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  36478025 cgttttgtaacttatatatagaaaaagatgttcttttaacaattagtaatgatgtcattttagctcattttcaagaaatgga 36478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 30136644 - 30136536
Alignment:
Q  162 cattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctt 260  Q
    ||||||||||||||||||| ||||| |||||||||| || |||||||||||| ||||| |||||||||| ||||| |||| |||||||||||| ||| ||    
T  30136644 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttctta-tttttcatattgtttgcattatt-tttttt 30136547  T
Q  261 taaaattttag 271  Q
    |||||||||||    
T  30136546 taaaattttag 30136536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 30142773 - 30142665
Alignment:
Q  162 cattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctt 260  Q
    ||||||||||||||||||| ||||| |||||||||| || |||||||||||| ||||| |||||||||| ||||| |||| |||||||||||| ||| ||    
T  30142773 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttctta-tttttcatattgtttgcattatt-tttttt 30142676  T
Q  261 taaaattttag 271  Q
    |||||||||||    
T  30142675 taaaattttag 30142665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 271
Target Start/End: Complemental strand, 30146195 - 30146087
Alignment:
Q  162 cattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctt 260  Q
    ||||||||||||||||||| ||||| |||||||||| || |||||||||||| ||||| |||||||||| ||||| |||| |||||||||||| ||| ||    
T  30146195 cattttcaacaaatggataggagaccattttcattgaaattgtattgtatcaaacaatgttatttctta-tttttcatattgtttgcattatt-tttttt 30146098  T
Q  261 taaaattttag 271  Q
    |||||||||||    
T  30146097 taaaattttag 30146087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 395922 - 396013
Alignment:
Q  144 aatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgt-aatgtattgtatcagacaatattatttcttattttt 234  Q
    |||||||| |||||||||||||||||||||||||||   |||| |||||||| || |||||||||||||| ||||| |||||||||||||||    
T  395922 aatgatgttattttagctcattttcaacaaatggatggtagacaattttcatcgtaaatgtattgtatcaaacaatgttatttcttattttt 396013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 25070719 - 25070803
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  25070719 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 25070803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 26903255 - 26903171
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  26903255 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaat 26903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 36617785 - 36617869
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  36617785 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 36617869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 36477965 - 36478035
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||| || |||||||  |||||||||||    
T  36477965 gatatgaaagttgtgaagagtaacctatgtaacaaaatggatgatcagtgactaaatgttcgttttgtaac 36478035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 7856680 - 7856612
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||  ||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||    
T  7856680 tatgaaatttgtgaagagtaacctatataacaaaatgggtgatcagtggctaaatgactgtcttgtaac 7856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 8034746 - 8034690
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggat 296  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
T  8034746 tagtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggat 8034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 6714413 - 6714522
Alignment:
Q  161 tcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttct 259  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||  |||| |  || |||||||||| ||||||||||| ||  ||||||| |||||    
T  6714413 tcattttcaacaaatagatatgagacaattttcattgtaattgtattacatca-aatatgttatttctta-tttttaatataattaacattattatttct 6714510  T
Q  260 ttaaaattttag 271  Q
    ||||||||||||    
T  6714511 ttaaaattttag 6714522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 26285748 - 26285814
Alignment:
Q  13 tgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| || |||||||    
T  26285748 tgaaagttgtgaagagtaaccaatgtaacaaaatgggtgattagtggctaaatgactgtcttgtaac 26285814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 23795011 - 23794964
Alignment:
Q  148 atgtcattttagctcattttcaacaaatggatatgagacgattttcat 195  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  23795011 atgtctttttagctcattttcaacaaatggataagagacgattttcat 23794964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 19832040 - 19832114
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccccag 305  Q
    ||||||||||| |||||||||||||||||| |||||||||||  ||| | | | ||| |||||||||||||||||    
T  19832040 tttttaatataatttgcattattgtttcttcaaaattttagcctcacttatccttaatgtctggatccgccccag 19832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 35502474 - 35502552
Alignment:
Q  123 tatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    ||||||||||||| ||||| ||||| ||| |||||| |||||||| |||||||||||| ||||| | ||| ||||||||    
T  35502474 tatgttcttttaaaaattagcaatgctgttattttaactcatttttaacaaatggatacgagacaaatttaattgtaat 35502552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 4137266 - 4137332
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatgga 178  Q
    |||||| |||| ||||||||  ||||||||  || |||||||||||| |||||||||||||||||||    
T  4137266 atatagtaagagatgttcttagaacaattagtaacgatgtcattttaactcattttcaacaaatgga 4137332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 38572596 - 38572546
Alignment:
Q  249 ttattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    ||||| ||| ||| |||||||| ||||||||||||||||||||||||||||    
T  38572596 ttattatttatttgaaattttatctccacatgtacctaaagtctggatccg 38572546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 11640676 - 11640615
Alignment:
Q  239 atagtttgcattattgtttctttaa-aattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||||||||| |||||| |||   ||||||||||||||||||||||||||||| ||||||    
T  11640676 atagtttgcattgttgttttttttttaattttagctccacatgtacctaaagtctagatccg 11640615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 23778421 - 23778376
Alignment:
Q  31 acctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgt 76  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||    
T  23778421 acctatgtaacaaaatgggtgatcagtgactaaataaccgttttgt 23778376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 7729036 - 7729075
Alignment:
Q  263 aaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  7729036 aaattttaactccacatgtacctaaagtctgaatccgccc 7729075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 24310059 - 24310001
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatga 67  Q
    |||||||||| ||||||||||||| ||||||| ||||||| |||||  ||| |||||||    
T  24310059 gatatgaaagttgtgaagagtaacatatgtaataaaatggatgatcggtggttaaatga 24310001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 52309319 - 52309376
Alignment:
Q  239 atagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||||| |||||| ||| |||||||||||||   ||||| |||||||||||||||||||    
T  52309319 atagtttgtattattatttatttaaaattttag---cacatatacctaaagtctggatccg 52309376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 35504219 - 35504260
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||    
T  35504219 tttttaatataatttgcattattttttcttttaaattttagc 35504260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 52308816 - 52308857
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtga 52  Q
    |||||| | ||||||||||||||||| |||||||||||||||    
T  52308816 tatgaatgttgtgaagagtaacctatttaacaaaatgggtga 52308857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 36475648 - 36475604
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatca 55  Q
    |||||||| | | |||||||||||||||||||||||| |||||||    
T  36475648 tatgaaagttctaaagagtaacctatgtaacaaaatgagtgatca 36475604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 114 - 303
Target Start/End: Complemental strand, 44873393 - 44873205
Alignment:
Q  114 atagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcag 213  Q
    ||||||| | |||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||     
T  44873393 atagaaaaagatgttcttttaacaattagcaatcatgttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgtattgtatcaa 44873294  T
Q  214 acaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  44873293 acaatattatttcttat-ttttaatatagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccgcccc 44873205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 124 - 301
Target Start/End: Complemental strand, 29866262 - 29866084
Alignment:
Q  124 atgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacg--attttcattgtaatgtattgtatcagacaatatt 221  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||| ||||||||    
T  29866262 atgttcttttaaaaattaataatgatgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgtaatgtattgtatcaaacaatatt 29866163  T
Q  222 atttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcc 301  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||||    
T  29866162 atttctta-tttataatatagtttgcattattttttctttaaaagtttagccccacatataccaaaagtctggatccgcc 29866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 7681359 - 7681549
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  7681359 atatagaaagatatgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatatattgtatc 7681458  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    | ||||| |||||||||  |||||||||||||||| |||||| ||||||| |||||||| |  ||||| |||| || |||| ||||||||||    
T  7681459 aaacaatgttatttctt-gtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccgcccc 7681549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 10381543 - 10381372
Alignment:
Q  98 gttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattg 197  Q
    ||||||||||||| ||||| | ||||  ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||    
T  10381543 gttttgtaacttatatataaacagat--gttattttaacaattaacaatgatgtcattttagttcattttcaacaaatagataagagacaattttgattg 10381446  T
Q  198 taatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    ||||||||| ||||| ||||| ||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  10381445 taatgtattatatcaaacaatgttacttcttat-ttttaatatagtttacattattgtttctttgaaattttagc 10381372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 32161390 - 32161573
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatca 212  Q
    |||| ||||| |||||||||||||| |||  | |||||| |||||| |||||||||||||||  ||||||||||||||||  || |||||||||||||||    
T  32161390 tataaaaagagatgttcttttaacatttagtattgatgttattttatctcattttcaacaaa--gatatgagacgattttagttataatgtattgtatca 32161487  T
Q  213 gacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
     ||||| |||||||||| ||||||||||| ||||||||||| |||||  ||||||||||| ||||||||| | || |||| ||||||    
T  32161488 aacaatgttatttctta-tttttaatataatttgcattattttttctccaaaattttagccccacatgtatcaaatgtctagatccg 32161573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 29841163 - 29841323
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtat 210  Q
    |||||||||||||||||||||||| ||||| ||  | ||| |||||| | |||||||||||||| |||||||||| ||||||||| ||| | |||| |||    
T  29841163 atatagaaagatatgttcttttaaaaattagcaccgttgttattttaacccattttcaacaaatagatatgagacaattttcattataattatattatat 29841262  T
Q  211 cagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    || ||||| |||||||||||||||| ||||||||||||||||| ||  |||||||| |||||    
T  29841263 caaacaatgttatttcttatttttt-atatagtttgcattattattattttaaaatgttagc 29841323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 24556915 - 24557056
Alignment:
Q  127 ttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttc 226  Q
    ||||||||||||||| |||| ||| || ||||  ||||||||||||||||||||  |  ||||||||||||||||||||||||||| ||||| ||||||     
T  24556915 ttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgattttcattgtaatgtattgtatcaaacaatgttattta 24557014  T
Q  227 ttattttttaatatagtttgcattattgtttctttaaaatttt 269  Q
    ||| ||||||||||| |||  |||||||||||||| |||||||    
T  24557015 tta-tttttaatataatttaaattattgtttctttgaaatttt 24557056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 11993687 - 11993773
Alignment:
Q  132 ttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||| ||||||| |||||    
T  11993687 ttaacaattaacaatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgtaatgtagtgtatcaaacaat 11993773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 29866346 - 29866278
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29866346 tatgaaagttgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgtcttgtaac 29866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 303
Target Start/End: Original strand, 34696984 - 34697147
Alignment:
Q  148 atgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagac--------aatattatttct-tattttttaat 238  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||        |||| ||||| |  |||    ||     
T  34696984 atgtcattttatctcattttcaacaaatggatatgagacgattttcattgtaatatattgtatcaaacaatgaggtaataatatttatggattaaaaaaa 34697083  T
Q  239 atagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||| ||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34697084 atag-ttgtactattatttatttaaaattttagctccacatgtacctaaagtctggatccgcccc 34697147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 2148481 - 2148338
Alignment:
Q  126 gttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatt 224  Q
    |||||||||| ||||| ||||||||  ||||||| || ||||||||||||| |||  |||  ||||||||||||| ||||||| ||||  |||| |||||    
T  2148481 gttcttttaaaaattagcaatgatgctattttagttcgttttcaacaaatgtataatagattattttcattgtaattgtattgcatcaatcaatgttatt 2148382  T
Q  225 tcttattttttaatatagtttgcattattgtttctttaaaatttt 269  Q
    ||||| |||||| |||| |||||||||| |||||||| |||||||    
T  2148381 tctta-tttttagtataatttgcattatagtttctttgaaatttt 2148338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 6978410 - 6978511
Alignment:
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctgg 294  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||| ||| |||||| |||||| || | |||| ||||    
T  6978410 ttgtaatgtattatatcaaacaatattatttctta-tttttaatatagtttacattactgtttctttgaaaatttagccccacatatatcaaaagactgg 6978508  T
Q  295 atc 297  Q
    |||    
T  6978509 atc 6978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 43421612 - 43421484
Alignment:
Q  124 atgttcttttaacaattaac--aatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatat 220  Q
    ||||||||||||||||||    |||| ||| ||||||| ||||||||||||||| ||||  |||||||||| ||||||| ||||||| |||| ||||| |    
T  43421612 atgttcttttaacaattagagtaatgttgtaattttagttcattttcaacaaatagatagaagacgatttttattgtaattgtattgcatcaaacaatgt 43421513  T
Q  221 tatttcttattttttaatatagtttgcatt 250  Q
    |||| |||| ||||||||||||||||||||    
T  43421512 tattactta-tttttaatatagtttgcatt 43421484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 45486203 - 45486287
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  45486203 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 45486287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 10381602 - 10381534
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||| |||||||| ||| ||||||||||    
T  10381602 tatgaaagttgtgaagagtaacttatgtaataaaatgggtgatcagtggctaaacgactgttttgtaac 10381534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 44873468 - 44873398
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||| ||| | |||||||    
T  44873468 gatatgaaagttgtgaagagtaacctatgtaacaaaatgggtgattagtggttaaataaccatcttgtaac 44873398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 11995259 - 11995319
Alignment:
Q  239 atagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||||||||| ||||||||    
T  11995259 atagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccg 11995319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 33235662 - 33235575
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa 200  Q
    |||||||||| ||||| ||  | |||||| ||||| ||| |||||||||||||||||||||||||||   ||| ||||||||||||||    
T  33235662 tatagaaagagatgtttttgaaccaattagcaatggtgttattttagctcattttcaacaaatggatgatagatgattttcattgtaa 33235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 259
Target Start/End: Original strand, 7388109 - 7388271
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  |||||||| | ||||| |||||| ||||| ||||| | | |||||||| | |||||||||| |||| |  |||| ||||| |    
T  7388109 accgtcttgtaactta--tatagaaataaatgtttttttaaaaattagcaatgtttttattttagcacgttttcaacaattggaaagaagacaattttta 7388206  T
Q  195 ttgtaat-gtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttct 259  Q
    ||||||| |||||  |||| ||||| ||| |||||||||| ||||||| | ||||||||| |||||    
T  7388207 ttgtaattgtattacatcaaacaatgttaattcttatttt-taatataatctgcattattttttct 7388271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 11463254 - 11463188
Alignment:
Q  135 acaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  11463254 acaattagcactgatgttattctagctcattttcaacaaatggatggtagacgattttcattgtaat 11463188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 6802742 - 6802836
Alignment:
Q  96 ccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgatttt 192  Q
    |||| ||||||||||  |||| ||||| ||||| |||||||||||| |||||| |||||||||  ||||||| |||||||| ||| ||||| |||||    
T  6802742 ccgtcttgtaactta--tataaaaagagatgttattttaacaattagcaatgaagtcattttacttcatttttaacaaatgaataggagacaatttt 6802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 31235847 - 31235911
Alignment:
Q  114 atagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatgga 178  Q
    ||||| ||| ||||||||  ||||||||  |||||||| ||||||||||||||||||||||||||    
T  31235847 atagagagagatgttcttgaaacaattagtaatgatgtaattttagctcattttcaacaaatgga 31235911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 35990865 - 35990917
Alignment:
Q  169 aacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatatt 221  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||    
T  35990865 aacaaatagataggagacgattttcattgttatgtattgtatcaaacaatatt 35990917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 18075785 - 18075735
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagt 290  Q
    |||||||||||||| ||| ||| ||||||||| ||||||||||||||||||    
T  18075785 tagtttgcattattatttatttgaaattttagttccacatgtacctaaagt 18075735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 6802685 - 6802753
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||||||||||   |||| |||||||||||||||||  |||||||||| |||| |||||||    
T  6802685 tatgaaagttgtgaagagtccactatataacaaaatgggtgatcggtggctaaatgtccgtcttgtaac 6802753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 24556829 - 24556897
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| |||||||||  | |||||||||||||||| ||||   ||||||||||||||| |||||||    
T  24556829 tatgaaagttgtgaagagacaactatgtaacaaaatggatgattggtggctaaatgaccgtcttgtaac 24556897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 43421733 - 43421633
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  |||| ||||  || ||||||||||||| |  |||  ||||||||||| ||||||| |||||||||||| ||||||||||| |    
T  43421733 accgtcttgtaactta--tataaaaagtaatattcttttaacaatcagtaatattgtcattttagttcatttt-aacaaatggataggagacgattttaa 43421637  T
Q  195 ttgt 198  Q
    ||||    
T  43421636 ttgt 43421633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 6802833 - 6802872
Alignment:
Q  232 ttttaatatagtttgcattattgtttctttaaaattttag 271  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  6802833 ttttaatatagtttgcattattgtttctttctaattttag 6802872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16863354 - 16863289
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatgga 178  Q
    |||||||||||||| || ||  |||||||| ||||||||| ||||||  ||||||||||||||||||    
T  16863354 atatagaaagatat-ttattggaacaattagcaatgatgtaattttaattcattttcaacaaatgga 16863289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 36051303 - 36051251
Alignment:
Q  183 agacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttt 234  Q
    |||||||||| ||||||| ||||||| |||| |||||||||||| ||||||||    
T  36051303 agacgatttttattgtaaatgtattgaatcaaacaatattatttattattttt 36051251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 95 - 269
Target Start/End: Original strand, 461308 - 461479
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    |||||||||||||||| |||||  |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  461308 accgttttgtaacttatatata--aagatatgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgattttca 461405  T
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaatttt 269  Q
    ||||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  461406 ttgtaatgtattgtaccaaacaatgttacttctta-tttttaatatagtttgcattattatttctttaaattttt 461479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 461261 - 461320
Alignment:
Q  20 tgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||| |||||||||||| ||||||||| |||| | ||| |||| ||||||||||||||    
T  461261 tgtgaaaagtaacctatgtgacaaaatggatgattagtggttaaacgaccgttttgtaac 461320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 32033084 - 32032894
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||| |||||||| |||||||||||| | ||||||||||||| ||||||||||||||    
T  32033084 atatagaaagagatgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgtattgtatc 32032985  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    | ||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||| ||||||  |||||||||| ||||||||||||||||||    
T  32032984 aaacaatgttatttcttat-ttttaatataggttgtattattgtttatttaaaaatttagcctcacatgtaccaaaagtctggatccgcccc 32032894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 112 - 272
Target Start/End: Complemental strand, 7700448 - 7700290
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||    
T  7700448 atatagaaaga-atgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatgtattgtatc 7700350  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    | ||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  7700349 aaacaatgttatttcttatttttt-atatagtttacattattgtttctttgaaattttagc 7700290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 112 - 298
Target Start/End: Original strand, 34878635 - 34878821
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||| |  ||||  ||||||||  ||||||||    
T  34878635 atatagaaatatatgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaatatgaaagaatttatattgtaattcattgtatc 34878734  T
Q  212 agac-aatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatcc 298  Q
    | || ||| |||||||||| |||||| |||||| | |||||||||||||||||||||||||| ||| || |||| || |||| |||||    
T  34878735 aaacaaatcttatttctta-tttttagtatagtcttcattattgtttctttaaaattttagccccatatataccaaatgtctagatcc 34878821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 34190136 - 34190030
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| ||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34190136 atatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaatgtattgtatc 34190037  T
Q  212 agacaat 218  Q
    | |||||    
T  34190036 aaacaat 34190030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 272
Target Start/End: Original strand, 18703639 - 18703802
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  | |||||||| |||||||||||||||||| ||||| | | ||||| ||||||||| |||||||||||| ||||| |||||||    
T  18703639 accgtcttgtaactta--tttagaaagagatgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaattttca 18703736  T
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    |||||    |||| |||| ||||| |||        ||||||||||||||||||||||||||||||| ||||||||||    
T  18703737 ttgta----attgcatcaaacaatgtta--------tttttaatatagtttgcattattgtttctttgaaattttagc 18703802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 27447700 - 27447859
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtat 210  Q
    ||||||| ||| |||||||||||| ||||| | ||  ||| |||||||||| ||| ||| |||| |||||||||| ||||||||||||| ||||||  ||    
T  27447700 atatagagagaaatgttcttttaa-aattagctatattgttattttagctcgtttccaataaatagatatgagacaattttcattgtaattgtattacat 27447798  T
Q  211 cagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    || |||||||||||||||| ||||||| ||| | ||||||||| ||||||| ||||||||||    
T  27447799 caaacaatattatttctta-tttttaacataatctgcattattttttctttgaaattttagc 27447859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 38417889 - 38417741
Alignment:
Q  123 tatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatatt 221  Q
    ||||||||||| | | ||||||||| ||  ||||||  |||||||||||||||||||| ||||| ||||||| ||||| ||||||| ||||  |||  ||    
T  38417889 tatgttcttttgaaagttaacaatgttgctattttaaatcattttcaacaaatggataggagacaattttcactgtaattgtattgcatcaaccaaagtt 38417790  T
Q  222 atttcttattttttaatatagtttgcattattgtttctttaaaattttag 271  Q
    |||||||| |||||||||||| |||||||| | |||||||||||||||||    
T  38417789 atttctta-tttttaatatagcttgcattagtttttctttaaaattttag 38417741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 3357071 - 3357161
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacga 188  Q
    ||||| ||||||||||  |||||||||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||    
T  3357071 accgtcttgtaactta--tatagaaagagatgtt-ttttaacaattagcaatgatgtcattttatctcattttcaacaaatggataggagacga 3357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 11562195 - 11562085
Alignment:
Q  189 ttttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaa 288  Q
    ||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||||   ||||||||||||||||| ||| | ||||  |||||||| | |||    
T  11562195 ttttcgttgtaatgtactgtatcaaacaatgttatttcttattttt-aatata---tgcattattgtttctttgaaaatctagcctcacatgtatcaaaa 11562100  T
Q  289 gtctggatccgcccc 303  Q
    |||||||||||||||    
T  11562099 gtctggatccgcccc 11562085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 6141444 - 6141383
Alignment:
Q  242 gtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  6141444 gtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatctgcccc 6141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 4075547 - 4075463
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| |||||||  | |||||| ||| ||||||||||||||||||| |||   |||||||||||||||||||    
T  4075547 gaaagagatgttcttttcacaattagtactgatgttattctagctcattttcaacaaattgatggcagacgattttcattgtaat 4075463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 32033155 - 32033087
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| || |||| ||||| | |||||||    
T  32033155 tatgaaagttgtgaagagtaacctatgtaacaaaatggatgatcactgactaattgaccatcttgtaac 32033087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 18458763 - 18458700
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||| ||| ||| | ||||||||||||||| ||||||||| |||||||||||||    
T  18458763 tagtttgcattattatttatttgacattttagctccacatatacctaaagcctggatccgcccc 18458700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 2081771 - 2081832
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcc 301  Q
    |||||||||||||  ||| ||| |||||||||||||||||||||||||||| | ||||||||    
T  2081771 tagtttgcattatcatttatttgaaattttagctccacatgtacctaaagtttagatccgcc 2081832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 16639303 - 16639351
Alignment:
Q  222 atttcttattttttaatatagtttgcattattgtttctttaaaattttag 271  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  16639303 atttcttatttt-taatatagtttgtattattgtttctttaaaattttag 16639351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 16639187 - 16639258
Alignment:
Q  130 ttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||||||| ||||||||||  ||||||| | ||||||||||||||||||||| |  |||||| |||||||    
T  16639187 ttttaacaatcaacaatgatgctattttagttgattttcaacaaatggatatgatatcattttcgttgtaat 16639258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 40372716 - 40372657
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    ||||| |||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||    
T  40372716 tagttcgcattattatttatttgaaatcttagctccacatggacctaaagtctggatccg 40372657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 34189997 - 34189937
Alignment:
Q  242 gtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    ||||| |||||| ||| |||||||||||| |||||||| ||||||||||||  ||||||||    
T  34189997 gtttgtattattatttatttaaaattttaactccacatatacctaaagtctaaatccgccc 34189937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 10498685 - 10498748
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaat 175  Q
    ||||||||||| ||||||||  ||||||||  |||||| | ||||||| |||||||||||||||    
T  10498685 atatagaaagagatgttcttagaacaattagtaatgatataattttagttcattttcaacaaat 10498748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 272
Target Start/End: Original strand, 16461644 - 16461784
Alignment:
Q  131 tttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttat 230  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||| ||||||||||     
T  16461644 tttaacaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatatattgtatcaaacaatgttatttctta- 16461742  T
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  16461743 tttttaatatagtttgcattattgtttctttgaaattttagc 16461784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 6689323 - 6689160
Alignment:
Q  104 taacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgt 203  Q
    ||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  6689323 taacttatatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaatgt 6689224  T
Q  204 attgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttag 271  Q
    ||||||||| ||  | ||||||    |||||||||||| |||||||||||||||||||  ||||||||    
T  6689223 attgtatcaaaccttgttattt----ttttttaatataatttgcattattgtttctttgtaattttag 6689160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 1975259 - 1975435
Alignment:
Q  123 tatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattg-taatgtattgtatcagacaatatt 221  Q
    ||||||||||||| ||||| ||||| | | |||||| |||||||||| ||||| || ||||||| |||||||||| || ||||||| ||||  |||| ||    
T  1975259 tatgttcttttaaaaattagcaatgctattattttaactcattttcatcaaatagacatgagacaattttcattgttattgtattgaatcaaccaatgtt 1975358  T
Q  222 atttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||| ||| ||||||||||||||| ||||||| |||||||||||||||| |  ||||| |||| || |||| ||||||    
T  1975359 atttatta-tttttaatatagtttacattattttttctttaaaattttaaccacacatataccgaatgtctagatccg 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 2919958 - 2920062
Alignment:
Q  189 ttttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaa 288  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||  ||||||| ||| |||||| ||||||||| | |||    
T  2919958 ttttcattgtaatgtattgtatcaaacaatgttatttctta-tttttaatatagtttgcattat--tttctttgaaaatttagccccacatgtatcaaaa 2920054  T
Q  289 gtctggat 296  Q
    ||||||||    
T  2920055 gtctggat 2920062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 14607764 - 14607864
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagaca 216  Q
    |||||||||| | |||||||||| |  |||||||| |||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||    
T  14607764 gaaagatatgat-ttttaacaataagaaatgatgttattttagctcattttcaacaaatggataggagaaaattttcattgtaatgtattgtatcaaaca 14607862  T
Q  217 at 218  Q
    ||    
T  14607863 at 14607864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 21883367 - 21883269
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtat 210  Q
    ||||||||||| || |||| | |||||||| ||||| |||||||||  |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  21883367 atatagaaagagatattctataaacaattagcaatgctgtcattttttctcattttcaacaaatggatagaagacgattttcattgtaatgcattgtat 21883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 33704205 - 33704118
Alignment:
Q  132 ttaacaattaacaatgatgtcatttt-agctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaat 218  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| ||||  |||| ||||| ||||||||||||||||||| |||||    
T  33704205 ttaacaattaacaatgatgtcatttttagctcatttttaacaaatagatagaagacaatttttattgtaatgtattgtatcaaacaat 33704118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 30702801 - 30702683
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgt-aatgtattgtatcagac 215  Q
    |||||| |||||||||| |||||||| | ||| || |||||||||||||||| |||| ||||||  |||||||||| || || | |||||||||||| ||    
T  30702801 gaaagagatgttctttttacaattaaaactgaagttattttagctcattttcgacaactggatagtagacgatttttatcgtcattgtattgtatcaaac 30702702  T
Q  216 aatattatttcttattttt 234  Q
    ||| |||||||||||||||    
T  30702701 aatgttatttcttattttt 30702683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 18817017 - 18816933
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  18817017 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttcattgtaat 18816933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 30705394 - 30705281
Alignment:
Q  116 agaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagac 215  Q
    |||||||||| ||||||| |||||||||| ||| || ||||||  |||| |||||||||||||||  ||||||||||     || |||||||||||| ||    
T  30705394 agaaagatattttcttttcacaattaacattgaagttattttaaatcatgttcaacaaatggataatagacgatttt-----tattgtattgtatcaaac 30705300  T
Q  216 aatattatttcttattttt 234  Q
    ||| |||||||||||||||    
T  30705299 aatgttatttcttattttt 30705281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 24901786 - 24901708
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcat 195  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||    
T  24901786 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcat 24901708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 14607865 - 14607926
Alignment:
Q  242 gtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||||||||| |||||||||| || ||| |||| ||||||||||||||||||    
T  14607865 gtttgcattattgtttctttgaaattttagccccccatataccaaaagtctggatccgcccc 14607926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 17848977 - 17849037
Alignment:
Q  242 gtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| ||||    
T  17848977 gtttgcattattgtttctttaaaattttaactccacatgtaccaaatgtctgaatctgccc 17849037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 35188023 - 35187963
Alignment:
Q  239 atagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||||  |||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  35188023 atagtttatattattatttatttaaaattttagctccacatgaacctaaagtctggatccg 35187963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 35188102 - 35188059
Alignment:
Q  169 aacaaatggatatgagacgattttcattgtaatgtattgtatca 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  35188102 aacaaatggataagagacgattttcattgtaatgtattgtatca 35188059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 8150815 - 8150889
Alignment:
Q  155 tttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttctt 228  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||| ||||||| |||| ||||| ||| |||||    
T  8150815 tttagctcattttcaacaaatggatagtagacgatttttattgtaattgtattgcatcaaacaatgttaattctt 8150889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 30705154 - 30705105
Alignment:
Q  20 tgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgacc 69  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  30705154 tgtgaaaagtcaactatgtaacaaaatgggtgatcaatggctaaatgacc 30705105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 21883230 - 21883172
Alignment:
Q  241 agtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||| |||||| ||| ||||||||||||| |||||||||||||||| | ||||||||    
T  21883230 agtttgtattattatttatttaaaattttagttccacatgtacctaaaatatggatccg 21883172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 30705460 - 30705401
Alignment:
Q  20 tgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| | | |||||||||||||| |||||||| ||||||||||||| | |||||||    
T  30705460 tgtgaagaatcaactatgtaacaaaatcggtgatcagtggctaaatgaccatcttgtaac 30705401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 14607688 - 14607744
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatga 67  Q
    |||||||| |||||||||||||||||||||| |||| | |||| | || ||||||||    
T  14607688 tatgaaagttgtgaagagtaacctatgtaaccaaatagatgattagtgactaaatga 14607744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 8065090 - 8064906
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  8065090 atataaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcattctcaaccaatggataggagacgattttcattgtaatgtattgtatc 8064991  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatc 297  Q
    | ||||| | ||||||||| ||||||||||||||| ||||||| || |||   |||||| | |||||| || ||||||||||||||    
T  8064990 aaacaatgtaatttcttat-ttttaatatagtttgtattattggtttttttttattttaaccccacatatatctaaagtctggatc 8064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 303
Target Start/End: Original strand, 27464238 - 27464444
Alignment:
Q  94 aaccgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttc 193  Q
    |||||| |||||||||| ||| | ||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||  ||||| ||||     
T  27464238 aaccgtcttgtaacttatatagaaaaagatat--tcttttaacaattaacaatgacgtcattttagttcattttcaacaaatagataatagacggtttta 27464335  T
Q  194 attgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctg 293  Q
    ||||| ||||||||||||| ||||  |||||||||| |||| ||||||||||| ||| |||||| ||| ||||||||||  |||||||||| || ||||     
T  27464336 attgtgatgtattgtatcaaacaacgttatttctta-ttttaaatatagtttgtattgttgtttatttgaaattttagcctcacatgtaccaaatgtcta 27464434  T
Q  294 gatccgcccc 303  Q
    ||||| ||||    
T  27464435 gatcctcccc 27464444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 9539609 - 9539748
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||| ||||||||| |||||||||||| | ||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  9539609 atataaaaagatatgatcttttaacaataagcaatgatattattttagctcattttcaacaaatggataagagatgattttcattgtaatgtattgtatc 9539708  T
Q  212 agacaatattatttcttattttttaatatagtttgcattat 252  Q
    | || || ||||||| || ||||||||||||||||||||||    
T  9539709 aaacgatgttatttcata-tttttaatatagtttgcattat 9539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 10781246 - 10781350
Alignment:
Q  145 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtt 244  Q
    |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  10781246 atgatgtcattttagcacattttcaacaaatagatataagacgattttcattgtaatgtattgtatcaaacaatattatttctta-tttttaatatagtt 10781344  T
Q  245 tgcatt 250  Q
    ||||||    
T  10781345 tgcatt 10781350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 10781149 - 10781235
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatat 181  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||    
T  10781149 accgtcttgtaacttatatatagaaagatatgttcttttaacaattagcaacgatttcattttaactcattttcaacaaatggatat 10781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 39299269 - 39299325
Alignment:
Q  236 aatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtct 292  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  39299269 aatatagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtct 39299325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10781091 - 10781161
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  10781091 gatatgaaagtgttgaagagtaacctatgtaacaaaataggtgatcagtggctaaatgaccgtcttgtaac 10781161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 10781365 - 10781431
Alignment:
Q  236 aatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||| ||||    
T  10781365 aatatagtttgcattattgtttctttaaaattttagcttcgcgtgtacctaaaatctggatctgccc 10781431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 34912491 - 34912438
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaa 64  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  34912491 tatgaaagttgttaagagtaacctatgtaacaaaatgggtgatcaatggctaaa 34912438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 9539538 - 9539598
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgt 71  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  9539538 tatgaaaattgtgaagagtaacctatgtaacaaaatggatgatcaatgactaaatgaccgt 9539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 23347896 - 23347807
Alignment:
Q  183 agacgattttcattgtaat-gtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    |||| |||||||||||||  |||||| |||| ||||| ||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||    
T  23347896 agacaattttcattgtaagcgtattgcatcaaacaatgttatttcttatattt-aatatagtttgcattattgtttatttgaaattttagc 23347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 25031127 - 25031058
Alignment:
Q  10 atatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| | || ||||||||| || |||||||    
T  25031127 atatgaaagttgtgaagattaacctatgtaacaaaatgggtgataagtgactaaatgacggtcttgtaac 25031058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 1017013 - 1017097
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| ||||||||| |||||||||||||   |||||||||| ||||||||    
T  1017013 gaaagagatgttcttttcacaattagcactgatgttattctagctcattctcaacaaatggatggcagacgatttttattgtaat 1017097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 43909379 - 43909451
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||| |||||||||||||||||| ||||||||||  |||||| |||  || |||||||||||||||    
T  43909379 tttttaatataatttgcattattgtttcttcaaaattttagtcccacatatactaaatgtctggatccgcccc 43909451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 9516769 - 9516840
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||| || |||  || ||||||||||||||    
T  9516769 tttttaatataatttgcattattgtttcttcaaaattttagccccatatatactaaatgtctggatccgccc 9516840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 41006179 - 41006120
Alignment:
Q  244 ttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||| ||||    
T  41006179 ttgcattatcgtttttttgaaattttagctccacatgtacgtaaagtctggatccacccc 41006120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 23353498 - 23353428
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatg 182  Q
    ||||||||||| |||||||||||| | ||| |||| |||| |||||| ||||||||||||||||| |||||    
T  23353498 atatagaaagaaatgttcttttaatatttagcaattatgttattttaactcattttcaacaaatgaatatg 23353428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 281150 - 281198
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacat 279  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  281150 tttttaatataatttgcattattgtttcttcaaaattttagccccacat 281198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 8065161 - 8065101
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgt 71  Q
    |||||||  ||||||||||||||||||||| ||||||| |||||| ||| |||||||||||    
T  8065161 tatgaaacttgtgaagagtaacctatgtaataaaatggatgatcattggttaaatgaccgt 8065101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 9477806 - 9477746
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgt 71  Q
    |||||||| |||||||||||||||||| || ||||| |||||||| |||| ||||||||||    
T  9477806 tatgaaagttgtgaagagtaacctatgcaataaaattggtgatcagtggcgaaatgaccgt 9477746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 34912357 - 34912306
Alignment:
Q  220 ttatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  34912357 ttatttcttattttt-aatatagcttgtattattgtttctttaaaattttagc 34912306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 9539762 - 9539829
Alignment:
Q  236 aatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||||||||||||||| ||||||||    ||||| |||  ||||||||||||||||||    
T  9539762 aatatagtttgcattattgtttctttgaaattttaatctcacatatactaaaagtctggatccgcccc 9539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 43175393 - 43175447
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcatttt 167  Q
    |||||||||||||||||||  ||||||||| |||| ||| |||||||||||||||    
T  43175393 tatagaaagatatgttcttgaaacaattaataatggtgttattttagctcatttt 43175447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 14230103 - 14230171
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggata 180  Q
    ||||||||||| ||||||||  |||| |||  ||| || | ||||||||||||||||||||||||||||    
T  14230103 atatagaaagaaatgttcttaaaacagttagtaataatataattttagctcattttcaacaaatggata 14230171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 25031052 - 25031004
Alignment:
Q  255 tttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||| |||||||||||||||||||| |||||||| |||||| ||||    
T  25031052 tttctttcaaattttagctccacatgtatctaaagtcgggatccacccc 25031004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 35438903 - 35438975
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| || | | |||  || |||||||||||||||    
T  35438903 tttttaatataatttgcattattgtttcttcaaatttttagccccgcgtatactaaatgtctggatccgcccc 35438975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 34912424 - 34912362
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaat 175  Q
    ||||||||| | ||||||||||||| ||||| ||||||||||||||| | |||||| |||||||    
T  34912424 atatagaaatagatgttcttttaaccattaaaaatgatgtcatttta-cccatttttaacaaat 34912362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 36420536 - 36420497
Alignment:
Q  263 aaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  36420536 aaattttagctccagatgtacctaaaatctggatccgccc 36420497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 27464205 - 27464251
Alignment:
Q  33 ctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||| |||||||||||||||||| ||||||||| ||||| |||||||    
T  27464205 ctatataacaaaatgggtgatcagtggctaaataaccgtcttgtaac 27464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 95 - 303
Target Start/End: Original strand, 33941617 - 33941814
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  |||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||| |||| ||||             
T  33941617 accgtcttgtaactta--tatagaaagaaatgttcttttaacaattagcaatgatgttattttaactcattttcaacaaattgataggaga--------- 33941705  T
Q  195 ttgtaatgtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaatttt-agctccacatgtacctaaagtctg 293  Q
    |||||||||||| ||||| ||||| ||||||||||||||| ||||||||||| |||||||||| |||||| |||| |||||||||| |||||||||||||    
T  33941706 ttgtaatgtattttatcaaacaatgttatttcttattttt-aatatagtttgtattattgtttttttaaattttttagctccacatatacctaaagtctg 33941804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 30074624 - 30074785
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagac--gattttcattgtaatgtattgta 209  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||  |||||| ||||||||||||||||    
T  30074624 atatagaaagagatgttcttttaacaattaacaatgatgtcattttaacttattttcaacaaatggataggagacgagattttgattgtaatgtattgta 30074723  T
Q  210 tcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagc 272  Q
    ||| || || || ||||||| ||||||||||| ||||||||||  ||||||| ||| ||||||    
T  30074724 tcaaacgatgttgtttctta-tttttaatataatttgcattatcttttctttgaaaatttagc 30074785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 46090191 - 46090339
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| | ||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  46090191 atatagaaagagaagttcttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaatgtatcgtacc 46090290  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttcttt 261  Q
    | ||||| |||||| ||| |||||||||||||||| || |||||||||||    
T  46090291 aaacaatgttatttttta-tttttaatatagtttgtatcattgtttcttt 46090339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 34346836 - 34346960
Alignment:
Q  145 atgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatcagacaatattatttcttattttttaatatagtt 244  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||| | ||||||||||||| | ||||| |||||||||| |||||||| |||||    
T  34346836 atgatgtcattttcgttcattttccacaaatggatatgagacgattttcactttaatgtattgtataaaacaatgttatttctta-tttttaatgtagtt 34346934  T
Q  245 tgcattattgtttctttaaaatttta 270  Q
    ||||||||||||||||| ||||||||    
T  34346935 tgcattattgtttctttgaaatttta 34346960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 2945391 - 2945515
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagac--gattttcattgtaatgtattgta 209  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||  |||||| ||||||||||||||||    
T  2945391 atatagaaagtgattttcttttaacaattagcaatgatgtcattttaggtcattttcaacaaatagataggagacgagatttttattgtaatgtattgta 2945490  T
Q  210 tcagacaatattatttcttattttt 234  Q
    ||| ||||| |||||||||||||||    
T  2945491 tcaaacaatgttatttcttattttt 2945515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 38300355 - 38300480
Alignment:
Q  95 accgttttgtaacttac--atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgatttt 192  Q
    ||||| |||||||||||  ||||||||| | ||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  38300355 accgtcttgtaacttacttatatagaaatagatgttttattaacaattatcaatgctgtcattttagctcattttcaacaaatggataggagacgatttt 38300454  T
Q  193 cattgtaatgtattgtatcagacaat 218  Q
    |||||||||  ||||||||| |||||    
T  38300455 cattgtaatacattgtatcaaacaat 38300480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 303
Target Start/End: Original strand, 32221853 - 32222024
Alignment:
Q  134 aacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagac--gattttcattgtaatgtattgtatcagacaatattatttcttatt 231  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||| |||||  |||| ||| |||||| ||||||| || ||||| |||||||||| |    
T  32221853 aacatttagcaatgatgtcattttaactcattttcaacaaatggataggagacgagattctcaatgtaatttattgtaccaaacaatgttatttctta-t 32221951  T
Q  232 ttttaatatagtttgcattattgt-ttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||| | | ||||||| | || ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  32221952 ttttaatataatatacattattttattttttaaaaatttagccccacatgtacaaaaagtctggatccgcccc 32222024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 27080525 - 27080371
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||| ||||||||| | |||||  |||||||||||    
T  27080525 atataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tgtattgtatc 27080429  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaatttta 270  Q
    | |||||  ||||||||| ||||||| |||||||   |||||||||| || ||||||||    
T  27080428 aaacaatgatatttctta-tttttaacatagtttaatttattgtttcattgaaatttta 27080371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 27197776 - 27197930
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||| ||||||||| | |||||  |||||||||||    
T  27197776 atataaaaagatatgttcttttaacaattagca-tgatgtcattttagctcattttcaacaaataaataggagacgattgttattgt--tgtattgtatc 27197872  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaatttta 270  Q
    | |||||  ||||||||| ||||||| |||||||   |||||||||| || ||||||||    
T  27197873 aaacaatgatatttctta-tttttaacatagtttaatttattgtttcattgaaatttta 27197930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 24658547 - 24658433
Alignment:
Q  95 accgttttgtaacttacatatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttca 194  Q
    ||||| ||||||||||  |||||||||| ||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  24658547 accgtcttgtaactta--tatagaaagagatgttctattaaca-ttagcaatgatgtcattttaactcattttcaacaaatggataggaaacgattttca 24658451  T
Q  195 ttgtaatgtattgtatca 212  Q
    ||||||| ||||||||||    
T  24658450 ttgtaatatattgtatca 24658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 25233057 - 25232916
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtat 210  Q
    ||||| ||||| |||||||||||| ||||| ||  | ||| |||||| ||||||||||||||||||||| ||||| ||||||||||||| | ||||||||    
T  25233057 atataaaaagaaatgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaattttcattgtaattatattgtat 25232958  T
Q  211 cagacaatattatttcttattttttaatatagtttgcattatt 253  Q
    || ||||| |||||||||| ||||| |||||||||||||||||    
T  25232957 caaacaatgttatttctta-tttttcatatagtttgcattatt 25232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 39785594 - 39785485
Alignment:
Q  126 gttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatt 224  Q
    |||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||| |||| ||||| |||||    
T  39785594 gttcttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaattgtattgcatcaaacaatgttatt 39785495  T
Q  225 tcttattttt 234  Q
    ||||||||||    
T  39785494 tcttattttt 39785485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 1691757 - 1691663
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtatt 206  Q
    ||||| ||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||| ||||||||| ||||    
T  1691757 atatataaagagatgttctattaacaattaacaatgatatcattttaactcattttcaacaaatggataggagatgatttacattgtaatatatt 1691663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 30074551 - 30074621
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||    
T  30074551 gatatgaaagttgtgaagagtaacctatgtaacaaaatgagtgatcaatggctaaatgaccatcttgtaac 30074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 26824465 - 26824584
Alignment:
Q  144 aatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttcttattttttaatatag 242  Q
    |||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||| |||| | |||||||||||||| |||||||| |||    
T  26824465 aatgatattattttacctcattttcaacaaatcgataggagacgattttcattgtaattgtattgcatcaaataatattatttctta-tttttaatttag 26824563  T
Q  243 tttgc--attattgtttcttt 261  Q
    ||| |  ||||||||||||||    
T  26824564 tttacatattattgtttcttt 26824584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 39781006 - 39781090
Alignment:
Q  117 gaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   |||||||||||||||||||    
T  39781006 gaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 39781090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 43265938 - 43266026
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaat 201  Q
    |||||||||| |||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||   ||| |||||||||||||||    
T  43265938 tatagaaagagatgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagatgattttcattgtaat 43266026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 36906368 - 36906214
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    ||||||||||| |||||||||| |||||||||||| |||| |||||| |||| |||||||||  | |||  |||||||||||||| ||    |||||||     
T  36906368 atatagaaagagatgttcttttgacaattaacaataatgttattttaactcactttcaacaatcgaatagtagacgattttcattcta----attgtatt 36906273  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttag 271  Q
      ||||| ||||||| || |||||| |||||| | ||| ||| ||||||||| |||||||    
T  36906272 gcacaatgttatttcgta-tttttagtatagtattcataattatttctttaagattttag 36906214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 10512049 - 10512140
Alignment:
Q  113 tatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggat--atg--agacgattttcattgtaa 200  Q
    |||||||||| ||||||||  | |||||| ||||| ||| |||||||||||||||||||||||||||  |||  ||||||||||||||||||    
T  10512049 tatagaaagagatgttcttgaaccaattagcaatggtgttattttagctcattttcaacaaatggatggatggtagacgattttcattgtaa 10512140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 7899476 - 7899404
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||| |||||||||||||||||| ||||||||||| |||||| |||  || || ||||||||||||    
T  7899476 tttttaatataatttgcattattgtttcttcaaaattttagccccacatatactaaatgtttggatccgcccc 7899404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 49144013 - 49143946
Alignment:
Q  214 acaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttagctccacatgta 282  Q
    ||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||  ||||||||    
T  49144013 acaatgttatttcttattttt-aatatagtttgtattattttttctttaaaattttagcaacacatgta 49143946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 10702724 - 10702661
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||| ||| ||| | ||||||||||||||| ||||||||||| |||||||||||    
T  10702724 tagtttgcattattatttatttgacattttagctccacatatacctaaagtcaggatccgcccc 10702661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 24658590 - 24658535
Alignment:
Q  24 aagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||    
T  24658590 aagagtaacctatgtaacaaaatggatgatcggtggctaaatgaccgtcttgtaac 24658535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 26050156 - 26050085
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    ||||||||||| |||||||||||||||||| ||||||||||| |||||| ||   || ||||||||||||||    
T  26050156 tttttaatataatttgcattattgtttcttcaaaattttagccccacatatattaaatgtctggatccgccc 26050085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 40716950 - 40717013
Alignment:
Q  153 attttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagac 215  Q
    |||||| ||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||    
T  40716950 attttacctcattttcaacaaatggatatgagacaatttttattgtaattgtattgtatgagac 40717013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 10703218 - 10703280
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgccc 302  Q
    |||||||||||||| ||| ||| | |||||| |||||||| ||||||||||||||||||||||    
T  10703218 tagtttgcattattatttatttgacattttaactccacatatacctaaagtctggatccgccc 10703280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 16841044 - 16841145
Alignment:
Q  169 aacaaatggatatgagacgattttcattgtaat-gtattgtatcagacaatattatttcttattttttaatatagtttgcattattgtttctttaaaatt 267  Q
    ||||||| |||| ||||| |||||||||||||| |||||| |||| | |||||||||||||||||||    |||||||||||||   |||||||||| ||    
T  16841044 aacaaatagataggagacaattttcattgtaattgtattgcatcaaaaaatattatttcttattttt---aatagtttgcattaacttttctttaaagtt 16841140  T
Q  268 ttagc 272  Q
    |||||    
T  16841141 ttagc 16841145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 2945318 - 2945386
Alignment:
Q  9 gatatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgta 77  Q
    |||||||||| ||||||||||||||||  ||||||||||| |||||| ||| ||||||| ||| |||||    
T  2945318 gatatgaaagttgtgaagagtaacctacataacaaaatggatgatcagtggttaaatgatcgtcttgta 2945386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 303
Target Start/End: Complemental strand, 24657962 - 24657898
Alignment:
Q  239 atagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    ||||||||||||||| ||| |||||||||||| |||||||| || ||||| ||||||||| ||||    
T  24657962 atagtttgcattattatttatttaaaattttaactccacatatatctaaaatctggatccacccc 24657898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 26059515 - 26059467
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacat 279  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||    
T  26059515 tttttaatataatttgcattattgtttcttcaaaattttagccccacat 26059467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 33941562 - 33941629
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||||||||||| ||||||||| ||| ||||| |||| ||||||||||||||| |||||||    
T  33941562 tatgaaagttgtgaagagtagcctatgtaataaa-tgggtaatcagtggctaaatgaccgtcttgtaac 33941629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 38300299 - 38300367
Alignment:
Q  11 tatgaaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgttttgtaac 79  Q
    |||||||| ||| ||||||||  || |||||||||||| |||||| ||||||||||||||| |||||||    
T  38300299 tatgaaagttgtaaagagtaaattaagtaacaaaatggatgatcagtggctaaatgaccgtcttgtaac 38300367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 1691598 - 1691539
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 299  Q
    |||||| ||||||| ||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  1691598 tagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccg 1691539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 48089227 - 48089170
Alignment:
Q  240 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatc 297  Q
    |||||||||||||| ||| ||| |||||||| |||||||||||| |||| ||||||||    
T  48089227 tagtttgcattattatttatttgaaattttaactccacatgtacttaaaatctggatc 48089170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 26787387 - 26787268
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtat 210  Q
    |||||||| || || ||||||||| ||||| | ||| | | |||||| ||| ||||||||||||| ||| || || ||||| ||||||| ||||||| ||    
T  26787387 atatagaatgaaatattcttttaaaaattagcgatgctattattttatctcgttttcaacaaatgaataagacacaattttgattgtaattgtattgcat 26787288  T
Q  211 cagacaatattatttcttat 230  Q
     | ||||| |||||||||||    
T  26787287 taaacaatgttatttcttat 26787268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 2945846 - 2945915
Alignment:
Q  231 tttttaatatagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcccc 303  Q
    |||||||||||||||||||||   ||||||| ||| ||||||  |  ||||||| ||||||||||||||||||    
T  2945846 tttttaatatagtttgcatta---tttctttgaaaatttagcctcgtatgtaccaaaagtctggatccgcccc 2945915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 1691824 - 1691775
Alignment:
Q  15 aaaggtgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaa 64  Q
    |||| ||||||||||||| ||||||||||||| |||||||| ||| ||||    
T  1691824 aaagttgtgaagagtaacatatgtaacaaaattggtgatcagtggataaa 1691775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 260
Target Start/End: Complemental strand, 18942708 - 18942679
Alignment:
Q  231 tttttaatatagtttgcattattgtttctt 260  Q
    ||||||||||||||||||||||||||||||    
T  18942708 tttttaatatagtttgcattattgtttctt 18942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 839 - 993
Alignment:
Q  112 atatagaaagatatgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgtattgtatc 211  Q
    |||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||  | |||  |||||||||||||||||||    |||||     
T  839 atatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaatagtagacgattttcattgtaat----tgtatt 934  T
Q  212 agacaatattatttcttattttttaatatagtttgcattattgtttctttaaaattttag 271  Q
      ||||| ||||||||||||||| | |||||||| | | ||||||||||| |||||||||    
T  935 gcacaatgttatttcttattttt-agtatagttttcgtcattgtttctttgaaattttag 993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 9762 - 9625
Alignment:
Q  131 tttaacaattaacaatgatgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaa-tgtattgtatcagacaatattatttctta 229  Q
    ||||||||||||||||| ||| | |||| |||  |||||||||||  |||| |||| ||||| ||||||| || | || |||| ||| | ||||||  ||    
T  9762 tttaacaattaacaatgttgttactttaactc--tttcaacaaatcaatataagacaatttttattgtaattgcactgcatcaaacattgttattttata 9665  T
Q  230 ttttttaatatagtttgcattattgtttctttaaaatttta 270  Q
     |||||||||| |||||||||||| ||||||| ||||||||    
T  9664 -tttttaatattgtttgcattattttttctttgaaatttta 9625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 13423 - 13371
Alignment:
Q  124 atgttcttttaacaattaacaatgatgtcattttagctcattttcaacaaatg 176  Q
    ||||||||  ||||||||  || ||||| ||||||||||||||||||||||||    
T  13423 atgttcttagaacaattagtaacgatgtaattttagctcattttcaacaaatg 13371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University