View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_35 (Length: 320)

Name: NF16798_high_35
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_35
NF16798_high_35
[»] chr4 (3 HSPs)
chr4 (117-302)||(32269637-32269825)
chr4 (75-119)||(55960697-55960741)
chr4 (77-117)||(6256481-6256521)
[»] chr8 (5 HSPs)
chr8 (75-116)||(18549979-18550020)
chr8 (79-116)||(43590705-43590742)
chr8 (75-116)||(4148685-4148726)
chr8 (75-116)||(23708976-23709017)
chr8 (75-108)||(42688435-42688468)
[»] chr2 (5 HSPs)
chr2 (75-116)||(12256901-12256942)
chr2 (75-116)||(19637229-19637270)
chr2 (75-116)||(19835822-19835863)
chr2 (75-116)||(34141442-34141483)
chr2 (75-119)||(18749393-18749437)
[»] chr1 (4 HSPs)
chr1 (75-119)||(40118745-40118789)
chr1 (75-117)||(31244763-31244805)
chr1 (75-116)||(8577532-8577573)
chr1 (75-115)||(5574289-5574329)
[»] scaffold0514 (1 HSPs)
scaffold0514 (75-118)||(1875-1918)
[»] chr5 (3 HSPs)
chr5 (75-113)||(12613034-12613072)
chr5 (75-116)||(34693246-34693287)
chr5 (75-115)||(30103481-30103521)
[»] chr3 (5 HSPs)
chr3 (75-117)||(30664502-30664544)
chr3 (75-116)||(29555868-29555909)
chr3 (75-116)||(45517687-45517728)
chr3 (75-116)||(48205045-48205086)
chr3 (78-118)||(55264815-55264855)
[»] chr6 (1 HSPs)
chr6 (75-116)||(34792022-34792063)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 117 - 302
Target Start/End: Complemental strand, 32269825 - 32269637
Alignment:
Q  117 attgtttaatgattgaaataaatcatttggtagttaccatccgtgaannnnnnnaacgaaagttgcaattggatatattttatataatcgaaagttacaa 216  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||    
T  32269825 attgtttaatgattgaaataaaccatttggtagttaccatccgtgaatttttttaacgaaagttgcaattcgatatattttatataatcgaaagttacaa 32269726  T
Q  217 tctgataaattgaatgaattttgaatacaaataaatagtctatataacaattatataatatgaaact---ccaacttttgtgttgggag 302  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||   |||||||||||||||||||    
T  32269725 tctgatcaattgaatgaattttgaatacaactaaatagtctatataataattatataatatgaaactcaaccaacttttgtgttgggag 32269637  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 55960741 - 55960697
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 119  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||    
T  55960741 tacaaaagttataccaaaatggttatacaaatatcatttctcatt 55960697  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 6256481 - 6256521
Alignment:
Q  77 caaaagttatacaaaaatgattatacaaatatgatttctca 117  Q
    |||||||| ||||||||||||| ||||||||| ||||||||    
T  6256481 caaaagttgtacaaaaatgattgtacaaatattatttctca 6256521  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 18550020 - 18549979
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  18550020 tacaaaagttatacaaaaatgattgtacaaatatcatttctc 18549979  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 43590742 - 43590705
Alignment:
Q  79 aaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43590742 aaagttatacaaaaatgattatacaaatatcatttctc 43590705  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 4148685 - 4148726
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||| |||||||||| |||||||||||| |||||||    
T  4148685 tacaaaagttgtacaaaaatggttatacaaatatcatttctc 4148726  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 23709017 - 23708976
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  23709017 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 23708976  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 42688468 - 42688435
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatat 108  Q
    |||||||||||||||||||||||| |||||||||    
T  42688468 tacaaaagttatacaaaaatgattgtacaaatat 42688435  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 12256942 - 12256901
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  12256942 tacaaaagttatacaaaaatgattgtacaaatatcatttctc 12256901  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 19637270 - 19637229
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  19637270 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 19637229  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 19835863 - 19835822
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  19835863 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 19835822  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 34141483 - 34141442
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  34141483 tacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34141442  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 18749393 - 18749437
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 119  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  18749393 tacaaaaattatacaaaaatggttgtacaaatatcatttctcatt 18749437  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 40118745 - 40118789
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctcatt 119  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  40118745 tacaaaaattatacaaaaatgattgtacaaatatcatttctcatt 40118789  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 31244763 - 31244805
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctca 117  Q
    ||||||| || ||||||||||||||||||||||| ||||||||    
T  31244763 tacaaaaattgtacaaaaatgattatacaaatatcatttctca 31244805  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 8577532 - 8577573
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  8577532 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 8577573  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 5574289 - 5574329
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttct 115  Q
    |||||||||| ||||||||||||| ||||||||| ||||||    
T  5574289 tacaaaagttgtacaaaaatgattgtacaaatatcatttct 5574329  T

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Target: scaffold0514 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 1875 - 1918
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctcat 118  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    
T  1875 tacaaaagttatacaaaaatggttgtacaaatatcatttctcat 1918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 12613034 - 12613072
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgattt 113  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  12613034 tacaaaaattatacaaaaatgattatacaaatatcattt 12613072  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 34693246 - 34693287
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  34693246 tacaaaaattatacaaaaatgattgtacaaatatcatttctc 34693287  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 30103481 - 30103521
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttct 115  Q
    ||||||| |||||||||||||||| ||||||||| ||||||    
T  30103481 tacaaaaattatacaaaaatgattgtacaaatatcatttct 30103521  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 30664544 - 30664502
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctca 117  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||    
T  30664544 tacaaaagttgtacaaaaatgattgtacaaatatcatttctca 30664502  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 29555868 - 29555909
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  29555868 tacaaaagttatacaaaaatggttgtacaaatattatttctc 29555909  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 45517687 - 45517728
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  45517687 tacaaaagttatacaaaaatggttgtacaaatatcatttctc 45517728  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 48205086 - 48205045
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    ||||||| |||||||||||||||| ||||||||| |||||||    
T  48205086 tacaaaaattatacaaaaatgattgtacaaatatcatttctc 48205045  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 55264855 - 55264815
Alignment:
Q  78 aaaagttatacaaaaatgattatacaaatatgatttctcat 118  Q
    |||||||||||||||||| || ||||||||| |||||||||    
T  55264855 aaaagttatacaaaaatggttgtacaaatatcatttctcat 55264815  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 34792063 - 34792022
Alignment:
Q  75 tacaaaagttatacaaaaatgattatacaaatatgatttctc 116  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  34792063 tacaaaagttgtacaaaaatgattgtacaaatatcatttctc 34792022  T

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