View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_40 (Length: 296)
Name: NF16798_high_40
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 36097224 - 36096958
Alignment:
| Q |
7 |
tatgccacccgagagatgagacacaaaaaatcaagaaatataccaaggacctcgctcaaaggttcccaaccaacgcccttgtagagaaaggctaccgact |
106 |
Q |
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| T |
36097224 |
tatgccacccgagaaatgagacacaaaaaatcaagaaatataccaaggacctcgctcaaaggttcccaaccaacgcccatgtagagaaaggctaccgact |
36097125 |
T |
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| Q |
107 |
ccaaaagagaaatggttccactatcaactcatagtgcaaacaaatcagggtgcctcctnnnnnnnnntttcaatgagaactggatcttaagaaccaattc |
206 |
Q |
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| T |
36097124 |
ccaaaagagaaatggttccactatcaactcatagtgcaaacaaatcagggtgcctcctaaaaaaaaatctcaatgagaactggatcttaagaaccaattc |
36097025 |
T |
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| Q |
207 |
cttcacatccagagtcttacgaaaaaatacgagatcattcggtagcctattaatagaaaattttccc |
273 |
Q |
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| T |
36097024 |
ctccacatccagagtcttacgaaaaaatacgagatcattcggtagcctattaatagagaaatttccc |
36096958 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 11649863 - 11649916
Alignment:
| Q |
95 |
aggctaccgactccaaaagagaaatggttccactatcaactcatagtgcaaaca |
148 |
Q |
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| T |
11649863 |
aggctaccaactccaaaagagaagtggttccaccatccactcataatgaaaaca |
11649916 |
T |
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