View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_41 (Length: 293)
Name: NF16798_high_41
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 34296828 - 34297092
Alignment:
| Q |
15 |
actgcaatataaacaaaaataaagttcaatgtcttaattcttttcaaa---agacagatgaaatatataat---------atccaatgagtnnnnnnntt |
102 |
Q |
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| T |
34296828 |
actgcaatataaacaaaaataaagttcaatgtcttaattcttttcaaattaagagagaggaaatatataatttaattaatatccaatgagtaaaaatatt |
34296927 |
T |
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| Q |
103 |
agattgtcagtcaatcataaccttcgaattataaaaattgtttgatttttattttatctacgttgaaagttagaagatataagcattgttgtcatgaata |
202 |
Q |
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| T |
34296928 |
agattgtcagtcaatcataaccttcgaattataaaaattgtttgatttttattttatctacgttgaaagttaga---tataagcattgttgtgatgaata |
34297024 |
T |
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| Q |
203 |
atgctaagaagacactctctattacacacatttcaacacactctttattgcttcaaattcatataagt |
270 |
Q |
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| T |
34297025 |
atgctaagaagacacgctctactacacacatttcaacacactctttattgcttgaaattcatataagt |
34297092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 34281335 - 34281448
Alignment:
| Q |
102 |
tagattgtcagtcaatcataaccttcgaattataaaaattgtttgatttttattttatcta-cgttgaaagttagaagatataagcattgttgtcatgaa |
200 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||| | |||||||| ||||| |
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| T |
34281335 |
tagactgtcaatcaatcataaccttcgaattataaaaaatatttgatttttattttatctatatttgaaagt---cagatatatgaattgttgtgatgaa |
34281431 |
T |
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| Q |
201 |
taatgctaagaagacac |
217 |
Q |
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| T |
34281432 |
taatgctaagaagacac |
34281448 |
T |
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