View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_5 (Length: 655)
Name: NF16798_high_5
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 25 - 638
Target Start/End: Complemental strand, 8447347 - 8446732
Alignment:
| Q |
25 |
tgttagtcatcatcataattttc-acattgcttgtttaattttcagccatttggtcaagtacctgcatatcaagatcacgacatttctctcttcggtaag |
123 |
Q |
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| T |
8447347 |
tgttagtcatcatcataatttttgacattgcttgtttaattttcagccatttggtcaagtacctgcatatcaagatcacgacatttctctcttcggtaag |
8447248 |
T |
|
| Q |
124 |
taattcattcattaatt-aatcagttgcttcttacttaattaataatcaattagtattttcaattttaattgtataacatcagagtcaagagctatatgt |
222 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
8447247 |
taattcattaattaatttaatcagttgcttcttacttaattaataatcaattagtattttcaatttaaattgtataacatcagagtcaagagcgatatgt |
8447148 |
T |
|
| Q |
223 |
cggtacgtatgtgagaaaaatagagagaaagggaacaaacaactgtatgatacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaag |
322 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447147 |
cggtacgtatgcgagaaaaatatagagaaagggaacaaacaactgtatggtacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaag |
8447048 |
T |
|
| Q |
323 |
gacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaacaagacgaaggagcaattcgacagagtaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447047 |
gacaaagcttcaatccaccttcttcaactctggtgtttcagcttgcatttgctcctcgaatgaagatcaaacaagacgaaggagcaattcgacagagtaa |
8446948 |
T |
|
| Q |
423 |
agaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatgagttcacacttgccgacctttcacatctt |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8446947 |
agaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttggctggtgatgaattcacacttgccgacctttcacatctt |
8446848 |
T |
|
| Q |
523 |
cccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttcttcgtcaagaaacaatgtgtcaaggtggtggacggaaatat |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446847 |
cccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttcttcgtcaagaaacaatgtgtcaaggtggtggacggaaatat |
8446748 |
T |
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| Q |
623 |
ccacacgtgagtcgtg |
638 |
Q |
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|||||||||||||||| |
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| T |
8446747 |
ccacacgtgagtcgtg |
8446732 |
T |
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