View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_50 (Length: 251)

Name: NF16798_high_50
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_50
NF16798_high_50
[»] chr4 (9 HSPs)
chr4 (84-245)||(32269818-32269979)
chr4 (2-47)||(23133472-23133517)
chr4 (2-50)||(19807338-19807386)
chr4 (2-53)||(36947009-36947060)
chr4 (2-47)||(22893971-22894016)
chr4 (2-47)||(22945639-22945684)
chr4 (5-50)||(38960580-38960625)
chr4 (2-50)||(1728009-1728057)
chr4 (2-50)||(8614285-8614333)
[»] chr7 (4 HSPs)
chr7 (2-87)||(1709387-1709472)
chr7 (2-53)||(17039260-17039311)
chr7 (2-47)||(38197764-38197809)
chr7 (2-47)||(41538583-41538628)
[»] chr5 (6 HSPs)
chr5 (5-55)||(21771388-21771438)
chr5 (2-34)||(25585392-25585424)
chr5 (2-47)||(14522887-14522932)
chr5 (2-47)||(18729200-18729245)
chr5 (2-47)||(42364532-42364577)
chr5 (2-50)||(39032524-39032572)
[»] chr3 (4 HSPs)
chr3 (2-55)||(14838960-14839013)
chr3 (5-55)||(884643-884693)
chr3 (2-55)||(27276837-27276890)
chr3 (2-47)||(44689906-44689951)
[»] chr2 (5 HSPs)
chr2 (2-47)||(11152622-11152667)
chr2 (2-55)||(12257004-12257057)
chr2 (2-55)||(18749278-18749331)
chr2 (2-54)||(38027531-38027583)
chr2 (2-54)||(38598265-38598317)
[»] chr1 (7 HSPs)
chr1 (2-50)||(50460632-50460680)
chr1 (2-78)||(23399881-23399957)
chr1 (2-53)||(26760665-26760716)
chr1 (2-47)||(30414967-30415012)
chr1 (2-55)||(41564795-41564848)
chr1 (2-55)||(48962089-48962142)
chr1 (2-54)||(48389995-48390047)
[»] chr8 (1 HSPs)
chr8 (2-47)||(18550082-18550127)
[»] chr6 (3 HSPs)
chr6 (2-47)||(27790158-27790203)
chr6 (2-55)||(34792109-34792162)
chr6 (5-53)||(16121258-16121306)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-50)||(48757-48805)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 32269818 - 32269979
Alignment:
Q  84 taaacaatccaagagacgcatagagcaattctcaaataatatgtcaaaaatttggtggacacttggaaaccgaatgggcattgcattccattaagattaa 183  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32269818 taaacaatccaagagatgcatagagcaattctctaataatatgtcaaaaatttggtggacacttggaaaccgaatgggcattgcattccattaagattaa 32269917  T
Q  184 gtcaacccactattgtagagatgtgctttgcttgcccaatgtacaatttggattcttctcac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32269918 gtcaacccactattgtagagatgtgctttgcttgcccaatgtacaatttggattcttttcac 32269979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 23133517 - 23133472
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||    
T  23133517 ttgtttttgatcaataagaagagaacacaacaagattgtcccaaaa 23133472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 19807386 - 19807338
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||||||||    
T  19807386 ttgtttttgatcaataagaagatatcacaacaaggttgtcccaaaaatt 19807338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 36947060 - 36947009
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattata 53  Q
    |||||||||||||||||||||| |  ||||||| ||| ||||||||||||||    
T  36947060 ttgtttttgatcaataaaaagagagaacaacaaaattatctcaaaaattata 36947009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 22893971 - 22894016
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| | ||||||||||||||| |||||    
T  22893971 ttgtttttgaccaataaaaagagagcacaacaagattgtcccaaaa 22894016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 22945639 - 22945684
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| | ||||||||||||||| |||||    
T  22945639 ttgtttttgaccaataaaaagagagcacaacaagattgtcccaaaa 22945684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 38960625 - 38960580
Alignment:
Q  5 tttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    ||||||| |||||| |||| ||||||||||||||||| ||||||||    
T  38960625 tttttgaccaataagaagagaacacaacaagattgtcccaaaaatt 38960580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 1728057 - 1728009
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    |||||||||| |||||| |||| ||||||||||| ||||| ||||||||    
T  1728057 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaatt 1728009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8614285 - 8614333
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    |||||||||| |||||| |||| ||||||||||| ||||| ||||||||    
T  8614285 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaatt 8614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 1709387 - 1709472
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattataccnnnnnnnttgtttaaatatcactgctcataaa 87  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||       ||||| |||||||||| ||||||||    
T  1709387 ttgtttttgaccaataaaaagagaacacaacaagattgtcccaaaaattataccaaaagagttgttcaaatatcactactcataaa 1709472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 17039260 - 17039311
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattata 53  Q
    |||||||||| |||| |||||| ||||||||||| ||||| |||||||||||    
T  17039260 ttgtttttgaccaatgaaaagagaacacaacaaggttgtcccaaaaattata 17039311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 38197764 - 38197809
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| |||| |||||||| ||||||||||||||| |||||    
T  38197764 ttgtttttgaccaatgaaaagatagcacaacaagattgtcccaaaa 38197809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 41538583 - 41538628
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| |||||| |||||||||||||||| ||||| |||||    
T  41538583 ttgtttttgaccaataagaagataacacaacaaggttgtcccaaaa 41538628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 21771438 - 21771388
Alignment:
Q  5 tttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  21771438 tttttgaccaataaaaagataacacaacaaggttgtcccaaaagttatacc 21771388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 25585424 - 25585392
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaa 34  Q
    |||||||||||||||||||||||||||||||||    
T  25585424 ttgtttttgatcaataaaaagataacacaacaa 25585392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 14522932 - 14522887
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||||| ||||| ||||||||| |||||    
T  14522932 ttgtttttgaccaataaaaagatagcacaataagattgtcccaaaa 14522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 18729245 - 18729200
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  18729245 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaa 18729200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 42364532 - 42364577
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| |||| |||||||||||||||||| ||||| |||||    
T  42364532 ttgtttttgaccaatgaaaagataacacaacaaggttgtcccaaaa 42364577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 39032572 - 39032524
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    |||||||||| |||||| |||| ||||||||||| ||||| ||||||||    
T  39032572 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaatt 39032524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 14839013 - 14838960
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||    
T  14839013 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaaattgtacc 14838960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 884643 - 884693
Alignment:
Q  5 tttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||||||| |||| || ||||||| ||| ||||||||||||||||    
T  884643 tttttgatcaataagaagagaaaacaacaaaattctctcaaaaattatacc 884693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 27276837 - 27276890
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||| ||||||||||| | || |||||||| |||||||||||||| ||||    
T  27276837 ttgtttttaatcaataaaaaaagaaaacaacaaggttgtctcaaaaattgtacc 27276890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 44689906 - 44689951
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  44689906 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaa 44689951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 11152667 - 11152622
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||    
T  11152667 ttgtttttgaccaataaaaagagaacacaacaagattgtcccaaaa 11152622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 12257004 - 12257057
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||    
T  12257004 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtacc 12257057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 18749331 - 18749278
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| ||||||||||| ||| ||||||| |||||  ||||||||||||    
T  18749331 ttgtttttgaccaataaaaagagaacgcaacaaggttgtcctaaaaattatacc 18749278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38027583 - 38027531
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatac 54  Q
    |||||||||| |||||| |||| ||||||||||| |||| |||||| ||||||    
T  38027583 ttgtttttgaccaataagaagagaacacaacaaggttgtttcaaaagttatac 38027531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38598317 - 38598265
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatac 54  Q
    |||||||||| |||||| |||| ||||||||||| ||||| ||||| ||||||    
T  38598317 ttgtttttgaccaataagaagagaacacaacaaggttgtcacaaaagttatac 38598265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 50460680 - 50460632
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    |||||||||| ||||||||||| |||||||||| |||||| ||||||||    
T  50460680 ttgtttttgaccaataaaaagaaaacacaacaaaattgtcccaaaaatt 50460632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 23399957 - 23399881
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattataccnnnnnnnttgtttaaatatcact 78  Q
    |||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||       ||||||||||||||||    
T  23399957 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgtttaaatatcact 23399881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 26760665 - 26760716
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattata 53  Q
    |||||||||| ||||||||||| | ||||||||| ||||||||||| |||||    
T  26760665 ttgtttttgaccaataaaaagagagcacaacaaggttgtctcaaaagttata 26760716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 30414967 - 30415012
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| |||||| |||| ||||||||||||||||| |||||    
T  30414967 ttgtttttgaccaataagaagagaacacaacaagattgtcccaaaa 30415012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 41564848 - 41564795
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||    
T  41564848 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtacc 41564795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 48962089 - 48962142
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| |||||| |||| ||||||||||| ||||| |||||||| ||||    
T  48962089 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtacc 48962142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 48390047 - 48389995
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatac 54  Q
    |||||||| | |||||||||||||||||| |||  ||||| ||||||||||||    
T  48390047 ttgtttttaaccaataaaaagataacacagcaaagttgtcccaaaaattatac 48389995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 18550082 - 18550127
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    ||||||||||||||||| |||| ||||||||||| ||||| |||||    
T  18550082 ttgtttttgatcaataagaagagaacacaacaaggttgtcccaaaa 18550127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 27790203 - 27790158
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaa 47  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  27790203 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaa 27790158  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 34792109 - 34792162
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaattatacc 55  Q
    |||||||||| ||||||||| | ||||||||||| ||||| ||||| |||||||    
T  34792109 ttgtttttgaccaataaaaaaagaacacaacaaggttgtcccaaaagttatacc 34792162  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16121258 - 16121306
Alignment:
Q  5 tttttgatcaataaaaagataacacaacaagattgtctcaaaaattata 53  Q
    ||||||| ||||||||||||| |||||||| |||||| ||||| |||||    
T  16121258 tttttgaccaataaaaagatagcacaacaaaattgtcccaaaagttata 16121306  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 48757 - 48805
Alignment:
Q  2 ttgtttttgatcaataaaaagataacacaacaagattgtctcaaaaatt 50  Q
    |||||||||| |||||| |||| ||||||||||| ||||| ||||||||    
T  48757 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaatt 48805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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