View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_53 (Length: 237)
Name: NF16798_high_53
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46793092 - 46792871
Alignment:
| Q |
1 |
ttaattaattagatcgtatattaacttattaattttgttgcacaattggcaggtgaaagaagcccgttacacaagactgtgtagcacaaaaagcatattg |
100 |
Q |
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| T |
46793092 |
ttaattaattagatcgtatattaacttattaattttgttgcacaattggcaggtgaaagaagcccgttacacaagactgtgttgcacaaaaaacatatta |
46792993 |
T |
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| Q |
101 |
actgtgaatggaaaatttccagggccaactataagagtccacaagggtgatacaatctatgttaatgtgtataacaagggaaaatacaacataactatac |
200 |
Q |
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| T |
46792992 |
actgtgaatggacaatttccagggccaactataagagtccacaagggtgatacaatctatgttaatgtgtataacaagggaaaatacaacataactatac |
46792893 |
T |
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| Q |
201 |
attggtattgttatttcaattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
46792892 |
attggtattgttatttcaattt |
46792871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 46784746 - 46784582
Alignment:
| Q |
57 |
aagaagcccgttacacaagactgtgtagcacaaaaagcatattgactgtgaatggaaaatttccagggccaactataagagtccacaagggtgatacaat |
156 |
Q |
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| T |
46784746 |
aagaagctcgttacacaagactgtgtagcacaaaaagcatactgactgtgaatggaaaatttccagggccaactataagagttcacaagggtgatacaat |
46784647 |
T |
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| Q |
157 |
ctatgttaatgtgtataacaagggaaaatacaacataactatacattggtattgttatttcaatt |
221 |
Q |
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| T |
46784646 |
ctatgttaatgtgtataacaagggaaaatacaacataactatacattggtattgttatttcaatt |
46784582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 22119995 - 22119843
Alignment:
| Q |
68 |
tacacaagactgtgtagcacaaaaagcatattgactgtgaatggaaaatttccagggccaactataagagtccacaagggtgatacaatctatgttaatg |
167 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22119995 |
tacacaagactgtt--gcacaaaaagcatattgactgtgaatggaaaatttccagggccaactataagagtccacaagggtgatacaatctatgttaatg |
22119898 |
T |
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| Q |
168 |
tgtataacaagggaaaatacaacataactatacattggtattgttatttcaattt |
222 |
Q |
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| T |
22119897 |
tgtataacaagggaaaatacaacataactatacattggtattgttatttcaattt |
22119843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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