View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_high_56 (Length: 220)
Name: NF16798_high_56
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 37331504 - 37331699
Alignment:
| Q |
9 |
ctgaaatgaagcaagatgttcaaaatgaagtcgcagtactatctaataaggtagagtatatggcttaccatatcatgcgtaaggttaaattgttcaacat |
108 |
Q |
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| T |
37331504 |
ctgaaatgagccaagatgttcaaaatgaagtcgcagtactatctaataaggtagagtgtatggcttaccatatcatgcgtaaggttaaattgttcaacat |
37331603 |
T |
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| Q |
109 |
taagattataattaaataattgaacttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
204 |
Q |
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| T |
37331604 |
taagattataattaaataattgaacttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
37331699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 37343794 - 37343901
Alignment:
| Q |
94 |
taaattgttcaacattaagattataattaaataattgaacttaaataatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgc |
193 |
Q |
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| T |
37343794 |
taaattgttcaacattaggattaaaattaattaattgaatttaaatt---tgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgt |
37343890 |
T |
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| Q |
194 |
agggttcctta |
204 |
Q |
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| T |
37343891 |
cgggttcctta |
37343901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 37322676 - 37322740
Alignment:
| Q |
140 |
aatgtgtatttttcagcacactagctcaatggatcacaagaagaaaggacatgcagggttcctta |
204 |
Q |
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| T |
37322676 |
aatgtgtatttttcagcacactagctcaatggatcacaggaagaaaggacatgttgggttcctta |
37322740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 37322529 - 37322580
Alignment:
| Q |
9 |
ctgaaatgaagcaagatgttcaaaatgaagtcgcagtactatctaataaggt |
60 |
Q |
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| T |
37322529 |
ctgaaatgaggcaagatgttcaaaatgaagtagcagtactatctaataaggt |
37322580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 19544025 - 19543912
Alignment:
| Q |
9 |
ctgaaatgaagcaagatgttcaaaatgaagtcgcagtactatctaataaggtagagtatatggcttaccatatcatgcgtaaggttaaattgttcaacat |
108 |
Q |
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| T |
19544025 |
ctgaaatgtatcaagatgttcataatgaaatagcagtcctatctaaaaaggtagacttcatggcttacttgatcatacaaaaggttaaattgacaaacat |
19543926 |
T |
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| Q |
109 |
taagattataatta |
122 |
Q |
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|||||||| ||||| |
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| T |
19543925 |
taagattaaaatta |
19543912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 37343708 - 37343757
Alignment:
| Q |
12 |
aaatgaagcaagatgttcaaaatgaagtcgcagtactatctaataaggta |
61 |
Q |
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| T |
37343708 |
aaatgaaccaagatgttcataatgaagtagcactactatctattaaggta |
37343757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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