View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_57 (Length: 208)

Name: NF16798_high_57
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_57
NF16798_high_57
[»] scaffold0662 (1 HSPs)
scaffold0662 (1-181)||(925-1105)
[»] chr4 (5 HSPs)
chr4 (1-181)||(47014786-47014966)
chr4 (153-205)||(42815403-42815458)
chr4 (153-205)||(50890091-50890145)
chr4 (153-205)||(55609183-55609237)
chr4 (155-205)||(31641583-31641633)
[»] chr3 (3 HSPs)
chr3 (147-208)||(41637294-41637358)
chr3 (153-205)||(16479631-16479685)
chr3 (154-205)||(29573373-29573427)
[»] chr5 (2 HSPs)
chr5 (151-205)||(18695315-18695372)
chr5 (151-205)||(41192584-41192640)
[»] chr7 (2 HSPs)
chr7 (146-180)||(40693573-40693607)
chr7 (153-181)||(40077253-40077281)
[»] chr6 (3 HSPs)
chr6 (162-205)||(31869075-31869120)
chr6 (154-205)||(1376364-1376418)
chr6 (154-205)||(1384112-1384166)
[»] chr2 (1 HSPs)
chr2 (151-205)||(23045090-23045143)
[»] chr8 (2 HSPs)
chr8 (153-205)||(6440080-6440135)
chr8 (154-205)||(10644819-10644873)
[»] chr1 (3 HSPs)
chr1 (153-205)||(21433418-21433473)
chr1 (153-181)||(8934640-8934668)
chr1 (146-182)||(39815338-39815374)


Alignment Details
Target: scaffold0662 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 925 - 1105
Alignment:
Q  1 gagtttgaggaataatggaataattgagattagagatgcgttttgtattgttttgagattttagatctagactctctcactttgagttgagagtgaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925 gagtttgaggaataatggaataattgagattagagatgcgttttgtattgttttgagattttagatctagactctctcactttgagttgagagtgaagga 1024  T
Q  101 tagtattaaattgtgacacttgtaacttatcattactttgagctatttaattagagaaattatatttgtacaactattttg 181  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||    
T  1025 tagtattaaattgtgacacttgtaacttatcattattttgtgctatttaattagagaaatgatatttgtacaactattttg 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47014786 - 47014966
Alignment:
Q  1 gagtttgaggaataatggaataattgagattagagatgcgttttgtattgttttgagattttagatctagactctctcactttgagttgagagtgaagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47014786 gagtttgaggaataatggaataattgagattagagatgcgttttgtattgttttgagattttagatctagactctctcactttgagttgagagtgaagga 47014885  T
Q  101 tagtattaaattgtgacacttgtaacttatcattactttgagctatttaattagagaaattatatttgtacaactattttg 181  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||    
T  47014886 tagtattaaattgtgacacttgtaacttatcattattttgtgctatttaattagagaaatgatatttgtacaactattttg 47014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 42815403 - 42815458
Alignment:
Q  153 agagaaattatatttgtacaactattttg---catcttttgtgacaactttctctc 205  Q
    |||||||| ||||||||||||||||||||   || |||||||||||||||||||||    
T  42815403 agagaaatgatatttgtacaactattttgtaacaacttttgtgacaactttctctc 42815458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 50890145 - 50890091
Alignment:
Q  153 agagaaattatatttgtacaactatttt--gcatcttttgtgacaactttctctc 205  Q
    |||||||| |||||||||||||||||||   || |||||||||||||||||||||    
T  50890145 agagaaatgatatttgtacaactatttttgacaacttttgtgacaactttctctc 50890091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 55609237 - 55609183
Alignment:
Q  153 agagaaattatatttgtacaactattttg--catcttttgtgacaactttctctc 205  Q
    |||||||| ||||||||||||| ||||||  || |||||||||||||||||||||    
T  55609237 agagaaatgatatttgtacaaccattttgtacaacttttgtgacaactttctctc 55609183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 31641633 - 31641583
Alignment:
Q  155 agaaattatatttgtacaactattttgcatcttttgtgacaactttctctc 205  Q
    |||||| ||||||| |||||||||||  | |||||||||||||||||||||    
T  31641633 agaaatgatatttgaacaactattttttaacttttgtgacaactttctctc 31641583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 41637358 - 41637294
Alignment:
Q  147 ttaattagagaaattatatttgtacaactatttt---gcatcttttgtgacaactttctctcaca 208  Q
    |||||||||||| | |||||||||||||||||||    || ||||||||||||||||||||||||    
T  41637358 ttaattagagaagtgatatttgtacaactattttttgacaacttttgtgacaactttctctcaca 41637294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 16479631 - 16479685
Alignment:
Q  153 agagaaattatatttgtacaactattttg--catcttttgtgacaactttctctc 205  Q
    |||||||| ||||||||||||| ||||||  || |||||||||||||||||||||    
T  16479631 agagaaatgatatttgtacaaccattttgtacaacttttgtgacaactttctctc 16479685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 29573427 - 29573373
Alignment:
Q  154 gagaaattatatttgtacaactattttg---catcttttgtgacaactttctctc 205  Q
    ||||||| ||||||||||||| ||||||   || |||||||||||||||||||||    
T  29573427 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctc 29573373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 18695315 - 18695372
Alignment:
Q  151 ttagagaaattatatttgtacaactattttg---catcttttgtgacaactttctctc 205  Q
    |||||||||| ||||||||||||| ||||||   || |||||||||||||||||||||    
T  18695315 ttagagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctc 18695372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 41192584 - 41192640
Alignment:
Q  151 ttagagaaattatatttgtacaactattttgcatc--ttttgtgacaactttctctc 205  Q
    |||||||||| |||||||||||||||||||||  |  |||| |||||||||||||||    
T  41192584 ttagagaaatgatatttgtacaactattttgctacaattttttgacaactttctctc 41192640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 40693607 - 40693573
Alignment:
Q  146 tttaattagagaaattatatttgtacaactatttt 180  Q
    ||||||||||||||| |||||||||||||||||||    
T  40693607 tttaattagagaaatgatatttgtacaactatttt 40693573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 40077253 - 40077281
Alignment:
Q  153 agagaaattatatttgtacaactattttg 181  Q
    |||||||||||||||||||||||||||||    
T  40077253 agagaaattatatttgtacaactattttg 40077281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 31869075 - 31869120
Alignment:
Q  162 atatttgtacaactattttg--catcttttgtgacaactttctctc 205  Q
    ||||||||||||||||||||  || |||||||||||||||||||||    
T  31869075 atatttgtacaactattttgtacaacttttgtgacaactttctctc 31869120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 1376364 - 1376418
Alignment:
Q  154 gagaaattatatttgtacaactatttt---gcatcttttgtgacaactttctctc 205  Q
    ||||||||||||||||||||| |||||    || |||||||||||||||||||||    
T  1376364 gagaaattatatttgtacaaccattttctaacaacttttgtgacaactttctctc 1376418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 1384112 - 1384166
Alignment:
Q  154 gagaaattatatttgtacaactatttt---gcatcttttgtgacaactttctctc 205  Q
    ||||||||||||||||||||| |||||    || |||||||||||||||||||||    
T  1384112 gagaaattatatttgtacaaccattttctaacaacttttgtgacaactttctctc 1384166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 23045090 - 23045143
Alignment:
Q  151 ttagagaaattatatttgtacaactattttgcatcttttgtgacaactttctctc 205  Q
    |||||||||| |||||||||||||||||||  | ||||| |||||||||||||||    
T  23045090 ttagagaaatgatatttgtacaactattttctaactttt-tgacaactttctctc 23045143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 6440080 - 6440135
Alignment:
Q  153 agagaaattatatttgtacaactat---tttgcatcttttgtgacaactttctctc 205  Q
    |||||||| ||||||||||||||||   ||| || |||||||||||||||||||||    
T  6440080 agagaaatgatatttgtacaactatttctttacaacttttgtgacaactttctctc 6440135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 10644873 - 10644819
Alignment:
Q  154 gagaaattatatttgtacaactattttg---catcttttgtgacaactttctctc 205  Q
    ||||||| ||||||||||||| ||||||   || |||||||||||||||||||||    
T  10644873 gagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctc 10644819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 21433473 - 21433418
Alignment:
Q  153 agagaaattatatttgtacaactattttg---catcttttgtgacaactttctctc 205  Q
    |||||||| ||||||||||||| ||||||   || |||||||||||||||||||||    
T  21433473 agagaaatgatatttgtacaaccattttgtaacaacttttgtgacaactttctctc 21433418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 8934668 - 8934640
Alignment:
Q  153 agagaaattatatttgtacaactattttg 181  Q
    |||||||||||||||||||||||||||||    
T  8934668 agagaaattatatttgtacaactattttg 8934640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 39815338 - 39815374
Alignment:
Q  146 tttaattagagaaattatatttgtacaactattttgc 182  Q
    |||||| |||||||||||||||||||||| |||||||    
T  39815338 tttaataagagaaattatatttgtacaaccattttgc 39815374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University