View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_high_6 (Length: 645)

Name: NF16798_high_6
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_high_6
NF16798_high_6
[»] chr8 (7 HSPs)
chr8 (290-442)||(45475394-45475546)
chr8 (290-440)||(13535067-13535217)
chr8 (290-440)||(13624607-13624757)
chr8 (519-602)||(13534904-13534986)
chr8 (519-602)||(13624444-13624526)
chr8 (548-596)||(41879009-41879057)
chr8 (400-440)||(41878848-41878888)
[»] chr1 (8 HSPs)
chr1 (290-442)||(23185009-23185161)
chr1 (290-440)||(4971993-4972143)
chr1 (292-440)||(4978561-4978709)
chr1 (519-630)||(23185252-23185359)
chr1 (290-379)||(1801131-1801220)
chr1 (545-602)||(4971835-4971892)
chr1 (545-602)||(5027404-5027461)
chr1 (310-379)||(24988138-24988207)
[»] chr6 (2 HSPs)
chr6 (290-440)||(19738085-19738235)
chr6 (517-597)||(19737915-19737994)
[»] chr4 (17 HSPs)
chr4 (290-440)||(10428546-10428696)
chr4 (290-449)||(35464681-35464842)
chr4 (314-440)||(35779722-35779848)
chr4 (517-601)||(23510016-23510100)
chr4 (517-596)||(47128790-47128868)
chr4 (519-598)||(35464914-35464993)
chr4 (517-602)||(10978703-10978790)
chr4 (517-602)||(48209046-48209130)
chr4 (545-602)||(35779542-35779604)
chr4 (525-602)||(9578853-9578929)
chr4 (525-602)||(9584548-9584624)
chr4 (396-440)||(9579016-9579060)
chr4 (396-440)||(9584711-9584755)
chr4 (396-440)||(48208923-48208967)
chr4 (563-601)||(10428423-10428461)
chr4 (402-440)||(47128661-47128699)
chr4 (396-440)||(10978580-10978624)
[»] scaffold0370 (2 HSPs)
scaffold0370 (119-269)||(13942-14092)
scaffold0370 (171-269)||(8704-8802)
[»] chr5 (6 HSPs)
chr5 (337-440)||(30853937-30854040)
chr5 (517-602)||(22986762-22986846)
chr5 (518-630)||(16592253-16592372)
chr5 (290-379)||(9720431-9720520)
chr5 (290-379)||(15930504-15930593)
chr5 (547-602)||(30854159-30854215)
[»] chr3 (3 HSPs)
chr3 (290-408)||(54575250-54575369)
chr3 (519-602)||(18372288-18372370)
chr3 (290-379)||(17334092-17334181)
[»] scaffold0070 (1 HSPs)
scaffold0070 (517-602)||(1144-1228)
[»] chr7 (1 HSPs)
chr7 (290-379)||(47259637-47259726)
[»] chr2 (1 HSPs)
chr2 (191-265)||(38691434-38691508)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 290 - 442
Target Start/End: Original strand, 45475394 - 45475546
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45475394 aagaaagacttaatggcttagcaatgatagcaattgagaatcctatgttgcgaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgc 45475493  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattcac 442  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  45475494 gcgtaggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattcac 45475546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 290 - 440
Target Start/End: Complemental strand, 13535217 - 13535067
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  13535217 aagaaagacttaatggcttagcaatgatagcaattgagaatcatatgttgcgaaatatacaatacgaagagttggttgatgaatttgcttcagtaaatgc 13535118  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  13535117 gcgtaggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattc 13535067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 290 - 440
Target Start/End: Complemental strand, 13624757 - 13624607
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  13624757 aagaaagacttaatggcttagcaatgatagcaattgagaatcatatgttgcgaaatatacaatacgaagagttggttgatgaatttgcttcagtaaatgc 13624658  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  13624657 gcgtaggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattc 13624607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 602
Target Start/End: Complemental strand, 13534986 - 13534904
Alignment:
Q  519 tgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||| |||||||| |||||||| | | ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  13534986 tgttgctgtgactgcttggcttc-tgtactgccagctttgtggattttttgttgttgttgtgaccgcttggttgttgtgctgcc 13534904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 602
Target Start/End: Complemental strand, 13624526 - 13624444
Alignment:
Q  519 tgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||| |||||||| |||||||| | | ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  13624526 tgttgctgtgactgcttggcttc-tgtactgccagctttgtggattttttgttgttgttgtgaccgcttggttgttgtgctgcc 13624444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 548 - 596
Target Start/End: Original strand, 41879009 - 41879057
Alignment:
Q  548 tgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgt 596  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||    
T  41879009 tgccagctttgtgggttttttgttgttgttgtgaccgcttggttgttgt 41879057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 41878848 - 41878888
Alignment:
Q  400 tctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  41878848 tctcgttttggtgtgaatgaagactcgttttgaaggtattc 41878888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 290 - 442
Target Start/End: Original strand, 23185009 - 23185161
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23185009 aagaaagacttaatggcttagcaatgatagcaattgagaatcctatgttgcgaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgc 23185108  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattcac 442  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  23185109 gcgtaggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattcac 23185161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 290 - 440
Target Start/End: Complemental strand, 4972143 - 4971993
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4972143 aagaaagacttaatggcttagcaatgatagcaattgagaatcctatgttgcgaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgc 4972044  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
     | |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  4972043 ccttaggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattc 4971993  T

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Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 4978561 - 4978709
Alignment:
Q  292 gaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgcgc 391  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  4978561 gaaagatttaatggcttagcaatgatagcaattgagaatcctatgttgcgaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgcac 4978660  T
Q  392 gtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  4978661 gtaggaagtctcgttttgatgtgaatgaagactcgttttgaaggtattc 4978709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 519 - 630
Target Start/End: Original strand, 23185252 - 23185359
Alignment:
Q  519 tgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgccgcgtgcatggcttttg 618  Q
    ||||| ||||| || |||||||| | ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||   ||| ||||||||||||    
T  23185252 tgttgctgtgattgcttggcttc-tgtgctgccagctttttgggtttttagttgttgttgtgactgcttggttgttgtgct---gcgcgcatggcttttg 23185347  T
Q  619 gtggttctgtgc 630  Q
    |||||| |||||    
T  23185348 gtggttttgtgc 23185359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 1801220 - 1801131
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||||   || |||||||| ||||| ||| |||||||||||||||    
T  1801220 aagaaagacttaatggattagcattgatagcaattgagaatgatattttggagaaaatacaatatgaagacttggttgatgaatttgctt 1801131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 4971892 - 4971835
Alignment:
Q  545 tgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  4971892 tgctgccagctttgtggattttttgttgttgctgtgactgcttggttgttgtgctgcc 4971835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 545 - 602
Target Start/End: Original strand, 5027404 - 5027461
Alignment:
Q  545 tgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  5027404 tgctgccagctttgtgggtttttcgttgttgttgtgactgcttggttgttgtgttgcc 5027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 24988138 - 24988207
Alignment:
Q  310 gcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    ||||||||||||||||||||| |||| |||  |||||||||||| ||||||||||||||| |||||||||    
T  24988138 gcaatgatagcaattgagaatgctatgttggaaaatatacaatatgaagagttgattgatcaatttgctt 24988207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 290 - 440
Target Start/End: Complemental strand, 19738235 - 19738085
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19738235 aagaaagacttaatggcttagcaatgatagcaattgagaatcctatgttgcaaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgc 19738136  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||||||||||||||||| |||||||||||||| | ||||| |||||||||    
T  19738135 gcgtaggaagtctcgtttaggtgtgaatgaagattcgttttgaaggtattc 19738085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 597
Target Start/End: Complemental strand, 19737994 - 19737915
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtg 597  Q
    |||||||||||||||| |||||||| | | ||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  19737994 gctgttgatgtgactgcttggcttc-tgtactgccagctttgtgggttttttgttgttgttgtgaccacttggttgttgtg 19737915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 290 - 440
Target Start/End: Complemental strand, 10428696 - 10428546
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  10428696 aagaaagacttaatggcttagcaatgatagcaattgagaatcctatgttgcgaaatatacaataagaagagttgattgatgaatttgcttcagtaaatgc 10428597  T
Q  390 gcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
     | |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  10428596 acataggaagtctcgttttggtgtgaatgaagactcgttttgaaggtattc 10428546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 290 - 449
Target Start/End: Original strand, 35464681 - 35464842
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagag--ttgattgatgaatttgctttagtaaat 387  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||| |||||||    
T  35464681 aagaaagacttaatggcttagcaatgatagtaaatgagaatcctatgttgcgaaatatacaatacggagagttttgattgatgaatttgcttcagtaaat 35464780  T
Q  388 gcgcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggtattcacttgaact 449  Q
    ||||||||||||||||||||||||||| |||||||||  |||| ||| ||||| | ||||||    
T  35464781 gcgcgtaggaagtctcgttttggtgtgcatgaagactcattttgaagatattcgcctgaact 35464842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 314 - 440
Target Start/End: Complemental strand, 35779848 - 35779722
Alignment:
Q  314 tgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgcgcgtaggaagtctcgttttggtgt 413  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  35779848 tgatagcaattgagaatcctatgttgcgaaatatacaatacgaagagttgattgatgaatttgcttcagtaaatgtgcgtaggaagtctcgttttggtgt 35779749  T
Q  414 gaatgaagacttgttttaaaggtattc 440  Q
    |||| |||||| ||||| |||||||||    
T  35779748 gaatcaagactcgttttgaaggtattc 35779722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 517 - 601
Target Start/End: Complemental strand, 23510100 - 23510016
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggtttttt-gctgttgttgtgactgcttggttgttgtgctgc 601  Q
    |||||||||||||||| |||||||| | | |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  23510100 gctgttgatgtgactgcttggcttc-tgtactgccagctttgtgggtttttttgttgttgttgtgaccgcttggttgttgtgctgc 23510016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 596
Target Start/End: Original strand, 47128790 - 47128868
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgt 596  Q
    ||||||| |||||||| |||||||| | | ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  47128790 gctgttgctgtgactgcttggcttctt-tactgccagctttgtgggttttttgttgttgttgtgaccgcttggttgttgt 47128868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 598
Target Start/End: Original strand, 35464914 - 35464993
Alignment:
Q  519 tgttgatgtgactgattggcttcctctgctgccagctttgtgggtttt-ttgctgttgttgtgactgcttggttgttgtgc 598  Q
    ||||| |||||| | |||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35464914 tgttgttgtgacggcttggcttc-tgtgctgccaactttgtgggtttttttgctgttgttgtgactgcttggttgttgtgc 35464993  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 10978703 - 10978790
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgtt---gttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||| |||||||| |||||||| | | |||| |||||||||||||||||| ||||   ||||||||||||||||||||||||||||    
T  10978703 gctgttgttgtgactgtttggcttc-tgtactgctagctttgtgggttttttgttgttgttgttgtgactgcttggttgttgtgctgcc 10978790  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 48209046 - 48209130
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||| |||||||| |||||||| | | || ||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  48209046 gctgttgctgtgactgcttggcttc-tgtacttccagctttgtgggttttttgtagttgttgtgaccacttggttgttgtgctgcc 48209130  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 35779604 - 35779542
Alignment:
Q  545 tgctgccagctttgtgggtttttt-----gctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||    
T  35779604 tgctgccagctttgtgggtttttttttttgttgttgttgtgactgcttggttgttgtgctgcc 35779542  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 9578929 - 9578853
Alignment:
Q  525 tgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    |||||||| |||||||| | | || ||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  9578929 tgtgactgcttggcttc-tgtacttccagctttgtgggttttttgtagttgttgtgaccacttggttgttgtgctgcc 9578853  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 9584624 - 9584548
Alignment:
Q  525 tgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    |||||||| |||||||| | | || ||||||||||||||||||||  |||||||||||  ||||||||||||||||||    
T  9584624 tgtgactgcttggcttc-tgtacttccagctttgtgggttttttgtagttgttgtgaccacttggttgttgtgctgcc 9584548  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 9579060 - 9579016
Alignment:
Q  396 gaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||    
T  9579060 gaaggctcgttttggtgtgaatgaagactcgttttgaaggtattc 9579016  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 9584755 - 9584711
Alignment:
Q  396 gaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||    
T  9584755 gaaggctcgttttggtgtgaatgaagactcgttttgaaggtattc 9584711  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 48208923 - 48208967
Alignment:
Q  396 gaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||    
T  48208923 gaaggctcgttttggtgtgaatgaagactcgttttgaaggtattc 48208967  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 601
Target Start/End: Complemental strand, 10428461 - 10428423
Alignment:
Q  563 ttttttgctgttgttgtgactgcttggttgttgtgctgc 601  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  10428461 ttttttgttgttgttgtgaccgcttggttgttgtgctgc 10428423  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 47128661 - 47128699
Alignment:
Q  402 tcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  47128661 tcgttttggtgtgaatgaagactcgttttgaaggtattc 47128699  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 10978580 - 10978624
Alignment:
Q  396 gaagtctcgttttggtgtgaatgaagacttgttttaaaggtattc 440  Q
    |||| ||| |||||||||||||||||||| ||||| |||||||||    
T  10978580 gaaggctcattttggtgtgaatgaagactcgttttgaaggtattc 10978624  T

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Target: scaffold0370 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 13942 - 14092
Alignment:
Q  119 tgtacatgttattctgttaaaattataagcaacgatacattaacaaaatttgcatacatgaaaccatgttg--tatatggcttgctttctctttaacccc 216  Q
    |||||||||||||||| | ||||  ||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||| ||    
T  13942 tgtacatgttattctgctgaaatagtaagcaacagtacattaacaaaatttgcatacatgaaaccatgttgtatatatggcttgcttt-tttttaacacc 14040  T
Q  217 taaaccagttaagtataagatgaaggatcattataatgtaaaaattgtagcat 269  Q
     ||||| ||||||||||||| |||| ||| || ||||||||||||||||||||    
T  14041 -aaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagcat 14092  T

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Target: scaffold0370; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 8704 - 8802
Alignment:
Q  171 catacatgaaaccatgttgtatat--ggcttgctttctctttaacccctaaaccagttaagtataagatgaaggatcattataatgtaaaaattgtagca 268  Q
    ||||||||||||||||||||||||  |||||||||| | |||||| || ||||| ||||||||||||| |||| ||| || |||||||||||||||||||    
T  8704 catacatgaaaccatgttgtatatatggcttgcttttt-tttaacacc-aaacctgttaagtataagacgaagaatcgttctaatgtaaaaattgtagca 8801  T

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Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 30853937 - 30854040
Alignment:
Q  337 ttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatgcgcgtaggaagtctcgttttggtgtgaatgaagacttgttttaaaggt 436  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||    
T  30853937 ttgcgaaatatacaatagaaaaagttgattgatgaatttgcttcagtaaatgcacgtaggaagtctcgtttcggtgtgaatgaagactcgttttgaaggt 30854036  T
Q  437 attc 440  Q
    ||||    
T  30854037 attc 30854040  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 517 - 602
Target Start/End: Complemental strand, 22986846 - 22986762
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||| ||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  22986846 gctgttgctgtgactgattggcttc-tgtactgccagctttgtgggttttttgttgttgttgtgaccgcttggttgttgtgctgcc 22986762  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 518 - 630
Target Start/End: Complemental strand, 16592372 - 16592253
Alignment:
Q  518 ctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc--------gcgtgca 609  Q
    ||||||||||||||| |||||||  | | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||        |||||||    
T  16592372 ctgttgatgtgactgtttggctta-tgtactgccagctttgtgggttttttgttgttgttgtgaccgcttggttgttgtgctgccagttttgtgcgtgca 16592274  T
Q  610 tggcttttggtggttctgtgc 630  Q
    ||||||||||||||| |||||    
T  16592273 tggcttttggtggttttgtgc 16592253  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 9720431 - 9720520
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||||   || |||||||| ||||| ||| |||||||||||||||    
T  9720431 aagaaagacttaatggattagcattgatagcaattgagaatgatattttggagaaaatacaatatgaagacttggttgatgaatttgctt 9720520  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 15930504 - 15930593
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||||   || |||||||| ||||| ||| |||||||||||||||    
T  15930504 aagaaagacttaatggattagcattgatagcaattgagaatgatattttggagaaaatacaatatgaagacttggttgatgaatttgctt 15930593  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 602
Target Start/End: Original strand, 30854159 - 30854215
Alignment:
Q  547 ctgccagctttgtgggtttttt-gctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  30854159 ctgccagctttgtggatttttttgttgttgttgtgaccgcttggttgttgtgctgcc 30854215  T

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Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 54575369 - 54575250
Alignment:
Q  290 aagaaagactt-aatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctttagtaaatg 388  Q
    ||||||||||| |||||||||||||||||||||||||||| |  ||| |||| |||||||||||||||||||||||||||| ||||||| | ||||||||    
T  54575369 aagaaagactttaatggcttagcaatgatagcaattgagagtgttatgttgcaaaatatacaatacgaagagttgattgatcaatttgcgtcagtaaatg 54575270  T
Q  389 cgcgtaggaagtctcgtttt 408  Q
    || ||||||||  |||||||    
T  54575269 cgagtaggaagattcgtttt 54575250  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 519 - 602
Target Start/End: Original strand, 18372288 - 18372370
Alignment:
Q  519 tgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||| |||||||| |||||||| | | ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  18372288 tgttgttgtgactgcttggcttc-tatactgccagctttgtgggtgttttgttgttgttgtgaccgcttggttgttgtgctgcc 18372370  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 17334181 - 17334092
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||||   || |||||||| ||||| ||| |||||||||||||||    
T  17334181 aagaaagacttaatggattagcattgatagcaattgagaatgatattttggagaaaatacaatatgaagacttggttgatgaatttgctt 17334092  T

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Target: scaffold0070 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 1144 - 1228
Alignment:
Q  517 gctgttgatgtgactgattggcttcctctgctgccagctttgtgggttttttgctgttgttgtgactgcttggttgttgtgctgcc 602  Q
    ||||||| |||||||| |||||||| | | |||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  1144 gctgttgctgtgactgcttggcttc-tgtactgccaactttgtgggttttttgttgttgttgtgaccgcttggttgttgtgctgcc 1228  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 47259726 - 47259637
Alignment:
Q  290 aagaaagacttaatggcttagcaatgatagcaattgagaatcctattttgcgaaatatacaatacgaagagttgattgatgaatttgctt 379  Q
    |||||||||||||||| |||||| |||||||||||||||||  |||||||   || |||||||| ||||| ||| |||||||||||||||    
T  47259726 aagaaagacttaatggattagcattgatagcaattgagaatgatattttggagaaaatacaatatgaagacttggttgatgaatttgctt 47259637  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 38691434 - 38691508
Alignment:
Q  191 atatggcttgctttctctttaacccctaaaccagttaagtataagatgaaggatcattataatgtaaaaattgta 265  Q
    ||||| |||||||| ||||||||||||||||| ||||||| ||| ||||||| ||| | |||||| |||||||||    
T  38691434 atatgacttgctttgtctttaacccctaaacctgttaagtgtaacatgaagggtcaatttaatgttaaaattgta 38691508  T

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