View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_1 (Length: 946)

Name: NF16798_low_1
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_1
NF16798_low_1
[»] chr8 (32 HSPs)
chr8 (429-928)||(28841059-28841557)
chr8 (1-429)||(28846221-28846649)
chr8 (594-919)||(22729151-22729477)
chr8 (1-334)||(14446531-14446860)
chr8 (1-376)||(27190433-27190799)
chr8 (126-521)||(23448764-23449148)
chr8 (253-575)||(30694029-30694368)
chr8 (1-215)||(13152541-13152755)
chr8 (294-521)||(24332777-24333009)
chr8 (324-521)||(9255980-9256180)
chr8 (1-157)||(24333586-24333742)
chr8 (317-521)||(13152805-13153006)
chr8 (105-215)||(9256235-9256345)
chr8 (594-770)||(24592422-24592599)
chr8 (370-522)||(14446375-14446529)
chr8 (609-791)||(8882541-8882723)
chr8 (594-791)||(41504667-41504864)
chr8 (381-521)||(40146228-40146370)
chr8 (523-576)||(22729513-22729566)
chr8 (655-791)||(6623556-6623692)
chr8 (658-770)||(9255646-9255758)
chr8 (655-785)||(30731857-30731987)
chr8 (655-716)||(16594727-16594788)
chr8 (526-573)||(23448679-23448726)
chr8 (288-349)||(40146165-40146223)
chr8 (620-770)||(14446113-14446263)
chr8 (245-295)||(24333291-24333341)
chr8 (595-677)||(27190090-27190172)
chr8 (523-575)||(13153041-13153093)
chr8 (707-755)||(24332117-24332165)
chr8 (150-189)||(18953849-18953888)
chr8 (526-575)||(27190217-27190266)
[»] chr1 (38 HSPs)
chr1 (1-519)||(9636644-9637149)
chr1 (5-383)||(30559156-30559528)
chr1 (1-521)||(48606759-48607251)
chr1 (245-521)||(40864922-40865181)
chr1 (7-215)||(14498712-14498920)
chr1 (245-519)||(25017102-25017358)
chr1 (317-521)||(49465526-49465741)
chr1 (317-521)||(52754196-52754393)
chr1 (100-215)||(52754030-52754145)
chr1 (245-365)||(50682661-50682781)
chr1 (55-186)||(30054708-30054839)
chr1 (388-516)||(32380047-32380177)
chr1 (600-770)||(14201490-14201659)
chr1 (615-791)||(52754547-52754722)
chr1 (593-723)||(30559772-30559902)
chr1 (655-770)||(44196196-44196311)
chr1 (609-778)||(6078609-6078778)
chr1 (1-69)||(52753964-52754032)
chr1 (317-375)||(14498601-14498661)
chr1 (523-576)||(49465776-49465829)
chr1 (609-770)||(49868159-49868319)
chr1 (1-45)||(32379999-32380043)
chr1 (523-575)||(32380217-32380269)
chr1 (1-44)||(25017371-25017414)
chr1 (609-743)||(29639854-29639988)
chr1 (614-723)||(32380336-32380445)
chr1 (523-575)||(52754428-52754480)
chr1 (1-44)||(40864866-40864909)
chr1 (655-791)||(24903559-24903695)
chr1 (683-791)||(30054166-30054274)
chr1 (631-791)||(49465912-49466071)
chr1 (523-574)||(30559683-30559734)
chr1 (528-575)||(48607291-48607338)
chr1 (525-575)||(9636552-9636602)
chr1 (705-755)||(14788963-14789013)
chr1 (658-791)||(34000376-34000509)
chr1 (655-712)||(47828702-47828759)
chr1 (402-520)||(30559528-30559647)
[»] chr5 (36 HSPs)
chr5 (2-521)||(27168943-27169430)
chr5 (1-215)||(8785597-8785810)
chr5 (1-210)||(3055300-3055510)
chr5 (245-519)||(40813383-40813640)
chr5 (1-157)||(11852587-11852743)
chr5 (389-521)||(15731094-15731227)
chr5 (594-791)||(19576292-19576489)
chr5 (1-84)||(23244717-23244800)
chr5 (600-778)||(8911488-8911666)
chr5 (381-521)||(8785307-8785449)
chr5 (631-785)||(3052622-3052775)
chr5 (594-672)||(40813162-40813240)
chr5 (600-701)||(23244927-23245028)
chr5 (523-575)||(27169465-27169517)
chr5 (327-378)||(8785433-8785484)
chr5 (308-365)||(15731032-15731089)
chr5 (655-791)||(13760184-13760320)
chr5 (523-575)||(15731267-15731319)
chr5 (151-213)||(40813661-40813725)
chr5 (429-514)||(3055035-3055122)
chr5 (523-575)||(8785220-8785272)
chr5 (655-791)||(12448065-12448201)
chr5 (523-575)||(40813291-40813343)
chr5 (600-715)||(22713783-22713897)
chr5 (657-716)||(36704829-36704888)
chr5 (247-305)||(8785522-8785580)
chr5 (609-723)||(27169579-27169692)
chr5 (655-713)||(31649154-31649212)
chr5 (523-564)||(3054952-3054993)
chr5 (655-791)||(6451831-6451966)
chr5 (151-215)||(11849702-11849766)
chr5 (594-672)||(4785137-4785215)
chr5 (594-723)||(15731367-15731495)
chr5 (614-743)||(39021589-39021717)
chr5 (239-278)||(11849681-11849720)
chr5 (750-791)||(15736982-15737023)
[»] chr6 (18 HSPs)
chr6 (147-521)||(8035702-8036079)
chr6 (99-521)||(25340011-25340409)
chr6 (1-215)||(12180672-12180886)
chr6 (279-521)||(12180922-12181159)
chr6 (1-215)||(11970774-11970988)
chr6 (390-575)||(30620986-30621184)
chr6 (602-770)||(12181299-12181466)
chr6 (594-770)||(2226361-2226537)
chr6 (595-773)||(7990359-7990538)
chr6 (525-575)||(12181196-12181246)
chr6 (99-157)||(8035493-8035551)
chr6 (655-716)||(25558532-25558593)
chr6 (315-354)||(25599115-25599154)
chr6 (656-755)||(30620777-30620876)
chr6 (594-723)||(12648760-12648888)
chr6 (530-571)||(25339929-25339970)
chr6 (27-69)||(8035438-8035480)
chr6 (647-784)||(23302724-23302858)
[»] chr2 (18 HSPs)
chr2 (1-521)||(12539116-12539602)
chr2 (245-521)||(28840934-28841212)
chr2 (1-184)||(34317614-34317797)
chr2 (254-383)||(34318149-34318278)
chr2 (388-521)||(23866637-23866772)
chr2 (620-784)||(27925765-27925928)
chr2 (594-770)||(31708860-31709035)
chr2 (594-791)||(30546911-30547106)
chr2 (427-521)||(31708642-31708738)
chr2 (526-575)||(31708764-31708813)
chr2 (594-784)||(31410433-31410623)
chr2 (525-575)||(23866550-23866600)
chr2 (523-576)||(28840562-28840615)
chr2 (402-521)||(34318278-34318387)
chr2 (523-571)||(34318422-34318470)
chr2 (659-791)||(31162175-31162307)
chr2 (686-773)||(34318612-34318699)
chr2 (659-790)||(45262189-45262320)
[»] chr3 (41 HSPs)
chr3 (1-441)||(3857023-3857436)
chr3 (131-521)||(55194570-55194947)
chr3 (298-575)||(22527015-22527311)
chr3 (244-521)||(51261530-51261790)
chr3 (1-191)||(51261817-51262007)
chr3 (236-521)||(15667552-15667818)
chr3 (278-383)||(9741255-9741360)
chr3 (2-134)||(15667868-15668000)
chr3 (594-771)||(15667243-15667420)
chr3 (594-778)||(46986581-46986766)
chr3 (594-791)||(47041169-47041366)
chr3 (389-521)||(24989039-24989173)
chr3 (431-521)||(3858626-3858719)
chr3 (679-768)||(3345096-3345185)
chr3 (609-770)||(53682142-53682303)
chr3 (440-521)||(3345416-3345499)
chr3 (595-770)||(16415831-16416006)
chr3 (595-770)||(18516805-18516980)
chr3 (609-770)||(33776564-33776725)
chr3 (602-770)||(46279347-46279515)
chr3 (417-517)||(9741138-9741240)
chr3 (594-677)||(51261322-51261405)
chr3 (600-746)||(22526813-22526963)
chr3 (527-575)||(3858758-3858806)
chr3 (523-575)||(55194483-55194535)
chr3 (280-349)||(24988960-24989026)
chr3 (594-723)||(20844523-20844652)
chr3 (637-770)||(30381834-30381967)
chr3 (523-575)||(15667465-15667517)
chr3 (523-575)||(24989208-24989260)
chr3 (594-749)||(55194283-55194437)
chr3 (135-189)||(9741427-9741480)
chr3 (523-575)||(9741047-9741099)
chr3 (523-575)||(47472837-47472889)
chr3 (523-571)||(51261447-51261495)
chr3 (533-575)||(3345310-3345352)
chr3 (609-755)||(47472624-47472772)
chr3 (728-791)||(16312040-16312103)
chr3 (728-791)||(18488824-18488887)
chr3 (728-791)||(18493034-18493097)
chr3 (633-770)||(24130695-24130832)
[»] scaffold0178 (3 HSPs)
scaffold0178 (1-383)||(17404-17768)
scaffold0178 (524-575)||(17198-17249)
scaffold0178 (426-521)||(17285-17381)
[»] chr4 (43 HSPs)
chr4 (1-334)||(31944329-31944644)
chr4 (320-521)||(31943754-31943955)
chr4 (245-521)||(29528246-29528521)
chr4 (245-505)||(17359012-17359255)
chr4 (94-377)||(24104671-24104939)
chr4 (245-521)||(4325133-4325385)
chr4 (373-575)||(3074189-3074404)
chr4 (395-521)||(24104931-24105059)
chr4 (389-521)||(53693280-53693414)
chr4 (594-770)||(56039748-56039923)
chr4 (346-521)||(56039449-56039617)
chr4 (419-521)||(9578475-9578574)
chr4 (614-770)||(47299848-47300004)
chr4 (594-791)||(10985177-10985374)
chr4 (437-520)||(10984957-10985042)
chr4 (334-426)||(9579535-9579627)
chr4 (334-426)||(9585230-9585322)
chr4 (656-770)||(21402908-21403022)
chr4 (620-770)||(24105203-24105352)
chr4 (523-575)||(4325046-4325098)
chr4 (614-770)||(9578175-9578330)
chr4 (523-575)||(24105081-24105133)
chr4 (523-575)||(31943667-31943719)
chr4 (595-770)||(31943450-31943623)
chr4 (655-717)||(54085615-54085677)
chr4 (600-791)||(45586519-45586707)
chr4 (99-156)||(51379514-51379571)
chr4 (655-791)||(3650672-3650808)
chr4 (523-575)||(9578388-9578440)
chr4 (163-215)||(17359270-17359322)
chr4 (523-571)||(29528556-29528604)
chr4 (1-55)||(4325387-4325440)
chr4 (655-713)||(24974606-24974664)
chr4 (525-574)||(10985080-10985129)
chr4 (655-784)||(50632961-50633090)
chr4 (523-575)||(56039651-56039703)
chr4 (523-574)||(53693449-53693500)
chr4 (655-716)||(12827186-12827247)
chr4 (705-770)||(29528738-29528803)
chr4 (679-791)||(53693631-53693744)
chr4 (50-112)||(24104597-24104659)
chr4 (463-505)||(31812571-31812613)
chr4 (631-723)||(4324875-4324967)
[»] chr7 (42 HSPs)
chr7 (1-215)||(43727810-43728024)
chr7 (1-215)||(9230215-9230429)
chr7 (245-478)||(25023994-25024210)
chr7 (362-521)||(26786695-26786856)
chr7 (301-456)||(28041559-28041714)
chr7 (245-370)||(5287244-5287369)
chr7 (350-521)||(9230011-9230189)
chr7 (609-791)||(24276773-24276955)
chr7 (27-157)||(5287940-5288070)
chr7 (594-770)||(6113228-6113402)
chr7 (388-519)||(43727570-43727703)
chr7 (1-82)||(23804645-23804726)
chr7 (24-143)||(24276397-24276517)
chr7 (13-157)||(25024455-25024599)
chr7 (402-521)||(5287124-5287245)
chr7 (615-791)||(28041913-28042089)
chr7 (2-78)||(23180033-23180109)
chr7 (418-521)||(24276519-24276624)
chr7 (655-791)||(43216949-43217085)
chr7 (151-204)||(5287722-5287775)
chr7 (609-770)||(38762075-38762236)
chr7 (523-575)||(6113490-6113542)
chr7 (245-312)||(23180266-23180331)
chr7 (523-575)||(25023861-25023913)
chr7 (615-791)||(26787010-26787185)
chr7 (523-575)||(43727481-43727533)
chr7 (631-778)||(29953014-29953161)
chr7 (614-740)||(31035962-31036090)
chr7 (615-791)||(9225745-9225920)
chr7 (655-791)||(43727237-43727373)
chr7 (655-713)||(20965861-20965919)
chr7 (655-716)||(3118130-3118191)
chr7 (317-354)||(26782386-26782423)
chr7 (523-575)||(26786891-26786943)
chr7 (523-575)||(28041797-28041849)
chr7 (706-790)||(38761589-38761673)
chr7 (6-45)||(8638598-8638637)
chr7 (642-701)||(23804908-23804967)
chr7 (609-726)||(25253010-25253125)
chr7 (523-575)||(5287037-5287089)
chr7 (524-575)||(24276660-24276711)
chr7 (526-575)||(23804762-23804811)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-116)||(435502-435617)
scaffold0002 (526-574)||(435619-435667)
scaffold0002 (594-706)||(435715-435826)
[»] scaffold0726 (3 HSPs)
scaffold0726 (409-521)||(698-812)
scaffold0726 (523-575)||(611-663)
scaffold0726 (280-349)||(845-911)
[»] scaffold0470 (1 HSPs)
scaffold0470 (655-791)||(12980-13116)


Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 429 - 928
Target Start/End: Complemental strand, 28841557 - 28841059
Alignment:
Q  429 atagttatggagaattattctagttaagtcattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgattaatggtaa 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28841557 atagttatggagaattattctagttaagtcattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgattaatggtaa 28841458  T
Q  529 ttttatgaattattcatttttagaatttatagtagattagaaaatattnnnnnnnnntgataagtgtaggcagaggtccttaatattttttaaatggtat 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||| |||||||||||||||||||||||||| |||||||||    
T  28841457 ttttatgaattattcatttttagaatttatagtagattagaaaatatttaaaaaaa-tgataattgtaggcagaggtccttaatatttttaaaatggtat 28841359  T
Q  629 ctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactc 728  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28841358 ctttagaattacctacgattttgtccgtaggtaaaggtgaaaaatatgccgtgacagccatttgacaatgacatacggatttagctacggaaattaactc 28841259  T
Q  729 tatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatacnnnnnnngtatgggttaaatctaggcatatgtccagg 828  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||| ||||||||||||||    
T  28841258 tatagtgacggatttcggttatcactaaaattcaaatttcttataaatttcttgtagtgatacaaaaaaagtatgggttaaatctgggcatatgtccagg 28841159  T
Q  829 ctcgtcgggttgtaaaaccgccttgtccctcaccaagtcttcgaacacaactattttataggatttttactttttgaagttggtttttggatgtcctacc 928  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28841158 ctcgtcgggttgtaaaaccgccttgtccctcaccaagtcttcgaacacaactattttataggatttttactttttgaagttggtttttggatgtcctacc 28841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 28846649 - 28846221
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28846649 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggcaactggtaga 28846550  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28846549 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccacaaattagaagttaaaatctgatttattatgtcatgttgt 28846450  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28846449 agaaatgattgtaagatttttttttttgtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtctaataagctattatg 28846350  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846349 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 28846250  T
Q  401 atggtttaggtgaatggtataatagttca 429  Q
    |||||||||||||||||||||||||||||    
T  28846249 atggtttaggtgaatggtataatagttca 28846221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 594 - 919
Target Start/End: Complemental strand, 22729477 - 22729151
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||  |||  ||||||| |||||||| ||||||||||||||||    
T  22729477 gtaggcagaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccatagccaaaggtggaaaatatgccgtgacagccatttga 22729378  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttc-ggttatcactaaaattcaaatttcttataaattttttgtagtgatacn 792  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||     
T  22729377 caatgacatacgaatttagctacggaaattaactcaatagtgacggatttcgggttatcactaaaattcaaaattcttataaatttcttgtagtgataca 22729278  T
Q  793 nnnnnngtatgggttaaatctaggcatatgtccaggctcgtcgggttgtaaaaccgccttgtccctcaccaagtcttcgaacacaactattttataggat 892  Q
          |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  22729277 aagaaagtatgggttaaatccaggcatatgtccaggctcgtcgggtggtaaaaccgccttgtccctccccaagtcttcgaagacaactattttataggat 22729178  T
Q  893 ttttactttttgaagttggtttttgga 919  Q
    |||| ||||||||||||||||||||||    
T  22729177 tttttctttttgaagttggtttttgga 22729151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 14446860 - 14446531
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||   |||||| ||    
T  14446860 cattgaaccacaaatcgttgatcttgt-ggtaacaattctttctcgcagacttataagattattttactagcttattgacaggacttgactactggtgga 14446762  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||||||||||| |||| |||||||||||  |||| ||||||||||||||||||| ||||||||||| |||||||    
T  14446761 cttccaacttttgttgatgttggtaatagctttggtgtacccaatattgttgaaattccacaaattagaagttaaaatctaatttattatgttatgttgt 14446662  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            |||||| ||||||||| ||||||| | |||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  14446661 agaagtgattgtaag---ttcttttaggtatgaggtgattgtagaagtgattgcaagttgtaactttatagtatgttattttgtctaataagttattatg 14446565  T
Q  301 aatagtgattcaaattttgttaccataaattaaa 334  Q
    ||||||||||||||||||||| ||||||||||||    
T  14446564 aatagtgattcaaattttgttgccataaattaaa 14446531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 27190799 - 27190433
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||| || |||  ||||||| ||    
T  27190799 cattgaaccacacatcgttgatcttgtttgtaacaattctttctcgcgggcttataagattattttactagcttgttgacatggcttgacaactggtgga 27190700  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| ||||||||||||||| || |        ||||| | |||||||||||||||||| |||||||||||||  |||||    
T  27190699 cttccaacttttgttgatgttggtaatagctttggtgcactcgct--------agatctacaaattagaagttaaaatcagatttattatgtccagttgt 27190608  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            ||||||| | |||||| || |||| ||||||||||||||||||||||||||||||||   |||| ||||||||    
T  27190607 agaagtgattgtaag---tttttttacgtatgaacttattgtagaactgattgtaagttgtaacttgatagtatgtcattttgtccgataaactattatg 27190511  T
Q  301 aata--gtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtatt 376  Q
    ||||  |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  27190510 aatagtgtgattcaaattttgttaccgtaaattaaatgagcaatgatgtatatatagattttgatttatgtgagtatt 27190433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 126 - 521
Target Start/End: Complemental strand, 23449148 - 23448764
Alignment:
Q  126 atagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaagannnnnnnnn 225  Q
    |||||||||||||||||| ||||||| |||||||| ||||||       ||||||||||||||||| | ||||||| || ||||||||||              
T  23449148 atagctttggtgcacccgctattgttaaagatccacaaatta-------aaatctgatttattatgccctgttgtaaaagtgattgtaag--ttttttta 23449058  T
Q  226 nngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttacca 325  Q
      |||| ||||||||| | ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||     |||| |||||||||||||    
T  23449057 aggtataaagtgattgcagaagtgattgtaatttgtaacttgatactatgtcattttgtctaataagctattatgaa----aattctaattttgttacca 23448962  T
Q  326 taaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatag 425  Q
    | ||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||| |  ||||| |||||| | |||| |||||||| ||||||||    
T  23448961 tgaattaaatgagcattagagtatatatagattttgatttctgtgagcattgagtatttatgagagtaatgagtatttgtttgggtgaatgatataatag 23448862  T
Q  426 ttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||||  ||||||||||||||||||||||  | || |||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  23448861 ttcatagttagtgagaattattctagttaagtcacttcaaaaatttattctaaaaattgattatagtaatcaatttcaaattccaatgatattgatta 23448764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 253 - 575
Target Start/End: Complemental strand, 30694368 - 30694029
Alignment:
Q  253 gtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaat----ggagta 348  Q
    |||||||||||||| ||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| || |||||||||      ||||    
T  30694368 gtaagttgtaacttaatattatgtcattttgtctattaagctattatgaatggtgattcaaattttgttaccataaactacatgagcaattaagtaagta 30694269  T
Q  349 tatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattc 448  Q
    ||||||||||||||||| |||||||||||| ||||| | ||||||||||||| || ||| ||| ||||||| ||||||| | | ||| |||||||||||     
T  30694268 tatatagattttgatttatgtgagtattgagtatttttgtgagtattgagtattgatttgggttaatggtacaatagtttacaattagggagaattatta 30694169  T
Q  449 tagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattga-----------ttaatggtaattttatg 535  Q
    || ||||| ||  | || |||||||||||||||||||||| | |||||||||| ||||| |||| |||||||           |||||||||||||||||    
T  30694168 tacttaagccacttcaataatttattctaaaaattgattatactaatcaattttaaattccaataatattgattaaactaattttaatggtaattttatg 30694069  T
Q  536 aattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30694068 aattattcatttttagaatttatagtagaatagaaaatat 30694029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13152541 - 13152755
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||  |||||||  |    
T  13152541 cattgaaccacacagcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagctttttgacatggcttgataactggtgta 13152640  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||||||||||||||||  |||| ||||||||||| ||||||||||||||||||| |||||||||  |  |||||    
T  13152641 cttccaacttttgttgatgttggtaatagctttggtgcaccctctattattgaagatccacaaattagaagttaaaatctaatttattataccccgttgt 13152740  T
Q  201 agaaatgattgtaag 215  Q
    |||| ||||||||||    
T  13152741 agaagtgattgtaag 13152755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 294 - 521
Target Start/End: Complemental strand, 24333009 - 24332777
Alignment:
Q  294 tattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttct----gtgagtattgactatttctatg 389  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |    ||||||||| | ||||| | ||    
T  24333009 tattataaataatgattcaaattttgttaccataaattaaatgagcaacgtagtatatatagattttgatttttgcgagtgagtattaagtatttatgtg 24332910  T
Q  390 agtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattac 487  Q
    |||||| |||| |||||| |||||| |||||||||||||| ||||| | | |||||||||||||||||||  | || |||||||| |||||||||||||     
T  24332909 agtatttagtattggtttgggtgaacggtataatagttcaaagttaggaataattattctagttaagtcaattcaataatttatt-taaaaattgattat 24332811  T
Q  488 attaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||||||||||||||| ||| |||||||||||    
T  24332810 attaatcaatttcaaattccaacgatattgatta 24332777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 324 - 521
Target Start/End: Complemental strand, 9256180 - 9255980
Alignment:
Q  324 cataaattaaatgagcaatggagtatatata--gattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtata 421  Q
    |||||||||||||||||||||||||||||||  ||||||||||  |||||||||||| ||||| | |||||||||| || |||||| |||||||||||||    
T  9256180 cataaattaaatgagcaatggagtatatatatagattttgattgatgtgagtattgagtatttatgtgagtattgattattggtttgggtgaatggtata 9256081  T
Q  422 atagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgat 519  Q
    ||||||||||| || |||||| ||||||||||||||||  | || |||||||||||||||||||||| | ||| | |||||| ||| |||||||||||||    
T  9256080 atagttcatagatagggagaa-tattctagttaagtcacttcaacaatttattctaaaaattgattatagtaaccgatttcagattccaatgatattgat 9255982  T
Q  520 ta 521  Q
    ||    
T  9255981 ta 9255980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 24333742 - 24333586
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||  ||| ||| ||    
T  24333742 cattgaatcatacatcgttgatcttgttggtaacaattctttctcacgggcttataagattattttactagcttattgacaagacttgacaaccggtgga 24333643  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagat 157  Q
    ||| |||||||| ||||||||||| |||| ||||||||||| | |||||| ||||||    
T  24333642 cttccaacttttattgatgttggtaatagttttggtgcacctgctattgtcgaagat 24333586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 317 - 521
Target Start/End: Original strand, 13152805 - 13153006
Alignment:
Q  317 ttgttaccataaattaaatgagcaatggag--tatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaa 414  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||       ||||| | |||||||| |||| || |||  |||||    
T  13152805 ttgttaccataaattaaatgagcaatggagtatatatatagattttgatttatgtaag-------tatttatgtgagtattaagtattgatttgagtgaa 13152897  T
Q  415 tggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatga 512  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||  |  | |||||||||||||||||||||| | ||||| |||||||||||||||||    
T  13152898 tggtataatagttcatagttagggagaactattctatttaagtcacttctacaatttattctaaaaattgattatagtaatcgatttcaaatttcaatga 13152997  T
Q  513 tattgatta 521  Q
    |||| ||||    
T  13152998 tattaatta 13153006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 9256345 - 9256235
Alignment:
Q  105 caacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaa 204  Q
    |||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  9256345 caacttttgttgatgttggtaatagctttggtgcacccgctatcgttgaagatccacaaattaaaagttaaaatctgatttattatgccatgttgaagaa 9256246  T
Q  205 atgattgtaag 215  Q
     ||||||||||    
T  9256245 gtgattgtaag 9256235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 594 - 770
Target Start/End: Original strand, 24592422 - 24592599
Alignment:
Q  594 gtaggcagaggtccttaa-tattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttg 692  Q
    ||||| |||||||||||| | ||||| |||||||||| |||||||||| |||| |||||||  ||||||||| || |||| |||  |||||| |||||||    
T  24592422 gtaggtagaggtccttaaatgtttttaaaatggtatccttagaattacctacggttttgtccctaggtaaagatggaaaacatgcagtgacaaccatttg 24592521  T
Q  693 acaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||||||  ||| |||||||| |||||||| ||||||||||||||||| | | |||| | || |||||||||||    
T  24592522 acaatgacatatagatgtagctacgaaaattaaccctatagtgacggatttcagctgtcaccataagtcaaatttctt 24592599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 370 - 522
Target Start/End: Complemental strand, 14446529 - 14446375
Alignment:
Q  370 gagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaat 467  Q
    ||||||||| ||| | | ||||| ||||||| |||||| | ||||||||| ||||  ||||||||||| | ||||||||||||||||||| |  || |||    
T  14446529 gagtattgagtatgtatgtgagtgttgagtattggtttggatgaatggtacaatatatcatagttatgaaaaattattctagttaagtcacttcaacaat 14446430  T
Q  468 ttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgattaa 522  Q
    ||||||||||||||||||| | |||| ||||||||||| |||||| |||||||||    
T  14446429 ttattctaaaaattgattatagtaataaatttcaaattccaatgacattgattaa 14446375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 609 - 791
Target Start/End: Original strand, 8882541 - 8882723
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| |||| || ||||||||||||| |||| |||| || ||||||||||||| ||||  ||  ||||||| |||||| |||||| | || |||    
T  8882541 taatgtttttaaaattgtctctttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacagtcatttgtcaatgatagacagat 8882640  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||| |||||||    |||||||||||||||| ||   ||||||||| ||||||||||| ||||||| ||||||||||||    
T  8882641 ttagctaaggaaatttttcctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttcttgtagtgatac 8882723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 594 - 791
Target Start/End: Complemental strand, 41504864 - 41504667
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| ||| |||| |||| ||||| ||||||| || |||||||||| |||| |||| || ||||||||||||| |||| |||  |||||||   ||||     
T  41504864 gtaggtagatgtccgtaatgtttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtgttttgg 41504765  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    | |||||| || ||||||||||||||||||  | ||||||||| |||||| ||   ||||||||| ||||||||||| ||||||| | |||| |||||    
T  41504764 ccatgacagacagatttagctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttcttgtaaatttctcgtagcgatac 41504667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 381 - 521
Target Start/End: Original strand, 40146228 - 40146370
Alignment:
Q  381 atttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaa 478  Q
    |||||| |||||||||| |  || ||| | |||||||||||  | |||||||||| ||| ||||||| ||||||||||| |  |||||||||||||||||    
T  40146228 atttctctgagtattgactgctgttttggatgaatggtatagaaattcatagttagggataattattttagttaagtcacttcaagaatttattctaaaa 40146327  T
Q  479 attgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
     ||||||| | |||||||||| ||||| |||||||||||||||    
T  40146328 gttgattatagtaatcaatttaaaattccaatgatattgatta 40146370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 22729566 - 22729513
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatatt 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22729566 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatatt 22729513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 6623692 - 6623556
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||||||||| || ||||| ||| ||||||||||  |||||    ||||| |||||||||| ||   ||||     
T  6623692 gtaggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcaca 6623593  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  6623592 aaaattcaaatttgttgtaaatttcttgtagcgatac 6623556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 658 - 770
Target Start/End: Complemental strand, 9255758 - 9255646
Alignment:
Q  658 ggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaa 757  Q
    |||||| ||| |||| |||| |||||||||||||| ||| |||||||  |||||||||||||||||  | |||||||||||||||| || | |||||| |    
T  9255758 ggtaaatgtgtaaaacatgtagtgacagccatttggcaacgacatacaaatttagctacggaaatttgccctatagtgacggattttggctgtcactata 9255659  T
Q  758 attcaaatttctt 770  Q
    | |||||||||||    
T  9255658 agtcaaatttctt 9255646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 655 - 785
Target Start/End: Original strand, 30731857 - 30731987
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| || |||||| ||||||||| |||||||| ||| ||||||||||  |||||    ||||| |||||||||| ||   ||||     
T  30731857 gtaggtaaaggtggaaaacatatcgtgatagccatttggcaatgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcaca 30731956  T
Q  755 aaaattcaaatttcttataaattttttgtag 785  Q
    ||||||||||||| || ||||||| ||||||    
T  30731957 aaaattcaaatttgttgtaaatttcttgtag 30731987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 655 - 716
Target Start/End: Complemental strand, 16594788 - 16594727
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctac 716  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||||||||    
T  16594788 gtaggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagctac 16594727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 23448726 - 23448679
Alignment:
Q  526 taattttatgaattattcatttttagaatttatagtagattagaaaat 573  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  23448726 taattttatgaattatttatttttagaatttatagtataatagaaaat 23448679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 40146165 - 40146223
Alignment:
Q  288 ataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtat 349  Q
    ||||||||||||||||||||||||||   ||||||||||||| ||||| ||||||| |||||    
T  40146165 ataagctattatgaatagtgattcaa---ttgttaccataaaataaattagcaatgaagtat 40146223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 620 - 770
Target Start/End: Complemental strand, 14446263 - 14446113
Alignment:
Q  620 aaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacgga 719  Q
    |||||||||| ||||||||||  | | ||||||||||||||||||||| |||| |||  ||||||  ||||| | |||||||||  |||||| |||||      
T  14446263 aaatggtatccttagaattaccaatggttttgtctgtaggtaaaggtggaaaacatgcggtgacaatcatttaaaaatgacataaagatttaactacgac 14446164  T
Q  720 aattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||| ||| ||||| | || |||| | | | |||||| || |||||||||||    
T  14446163 aataaaccctataataacagattccagctgtcactacaagtcaaatttctt 14446113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 24333341 - 24333291
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagcta 295  Q
    ||||||| ||||||||||||||||||||||| |||||| | ||||||||||    
T  24333341 aagtgattgtaagttgtaacttgatagtatgccattttatctaataagcta 24333291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 595 - 677
Target Start/End: Complemental strand, 27190172 - 27190090
Alignment:
Q  595 taggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgt 677  Q
    |||| ||| ||||||||||||||| |||| ||||  |||||||||   ||| ||||||| |||||||||| ||||||||||||    
T  27190172 taggtagaagtccttaatatttttaaaattgtatacttagaattatccacggttttgtccgtaggtaaagatgaaaaatatgt 27190090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 13153041 - 13153093
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||| |||||||||| | |||| ||||||||||| ||||||||||    
T  13153041 tggtaattttattaattattcatctctagagtttatagtagaatagaaaatat 13153093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 707 - 755
Target Start/End: Complemental strand, 24332165 - 24332117
Alignment:
Q  707 atttagctacggaaattaactctatagtgacggatttcggttatcacta 755  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||    
T  24332165 atttagctatggaaattagctcaatagtgacggattttggttatcacta 24332117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 18953888 - 18953849
Alignment:
Q  150 ttgaagatccataaattagaagttaaaatctgatttatta 189  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  18953888 ttgaagatctatcaattagaagttaaaatctgatttatta 18953849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 27190266 - 27190217
Alignment:
Q  526 taattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||| ||| |||||||||||||| |||||||||  |||||||||    
T  27190266 taattttatgtattgttcatttttagaatatatagtagaaaagaaaatat 27190217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 9637149 - 9636644
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||||| ||   ||| ||| ||    
T  9637149 cattgaaccacgcatcattgatcttgttggtaacaattatttctcacgaacttataagattattt-actagcttattggcagggctttataaccggtgga 9637051  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| ||||||||||||||||| || || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||    
T  9637050 ctttcaacttttgttgatgttagtaatggctttggtgcacccgctattgttgaagatccaaaaattagaagttaaaatctgatttactatgccttgttgt 9636951  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            ||||||||||| |||||            |||||||||||||| ||||||||||||| |||||||||||||||    
T  9636950 agaagtgattgtaag--ttttttttaggtatgaagtgagtgtaa------------gttgtaacttgatattatgtcattttgtctaataagctattatg 9636865  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| | |||||||||| ||    
T  9636864 aatagtgattcaaattttattactataaattaaatgagcaatgcagtatatatagattttgatttctgtgattattgagtatttttgtgagtattgatta 9636765  T
Q  401 atggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatt 498  Q
     ||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||| |  || |||||||| ||||||||||||| | || ||||||    
T  9636764 ttggtttaggtgaatggtacgatagttcatggttaaggagaattattctagttaagtcactccaaaaatttattttaaaaattgattatagtattcaatt 9636665  T
Q  499 tcaaatttcaatgatattgat 519  Q
    ||||||| |||||||||||||    
T  9636664 tcaaattccaatgatattgat 9636644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 30559156 - 30559528
Alignment:
Q  5 gaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagactta 104  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||  ||||||||| |||||||||||||||||||||  | |||  ||| ||| |||||     
T  30559156 gaaccacacatcgttgatcttgttgataacaattctttctcgcgagcttataagaatattttactagcttattgacaaagcttgacaaccggtggacttt 30559255  T
Q  105 caacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaa 204  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||    
T  30559256 caacttttgttgatgttggtaatagctttggtgcacccgctattgttgaagatccacaaattataagttaaaatctgatttattatgccctgttgtagaa 30559355  T
Q  205 atgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaata 304  Q
     ||||||||||            ||| |||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  30559356 gtgattgtaag----ttttttaggtaagaagtgattgtagaaatgattgtaagttgtaacttgatagtatgtcattttgtctaataagccattatgaata 30559451  T
Q  305 gtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatt 383  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||| ||||    
T  30559452 gtgattcgaattttgttaccataaattaaatgagcaatggagtatatat--attttgattgttgtgagtattgagtatt 30559528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 48606759 - 48607251
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||||||||  |||||||||||||||  |||| || ||    
T  48606759 cattgaaccacacatcgttgatcttgttggtagcaattctttcccacgaacatataagattattttactagaatattgacagggtttgataactagtgga 48606858  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||| ||||| |||||||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  48606859 cttccaacttttgttgattttggtaatagctttggtgcacttgctattgttgaagatccacaaattagaagttaaaatctgatttattatgccatgttgt 48606958  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    ||||  ||||||| |            |||| ||||||||             ||||||||||||||||| ||||| ||||| |  ||||||||||||||    
T  48606959 agaagggattgtaggttttttttttaggtataaagtgatt------------ttaagttgtaacttgatattatgttattttctccaataagctattatg 48607046  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||                   |||||||||    
T  48607047 aatagtgattcaaattttgttaccataaattaaatgagcaatgtagtatatatagattttgatttctctgag-------------------tattgagta 48607127  T
Q  401 atggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattaca-ttaatcaat 497  Q
     | |||| |||||||||||||| |||||||||||  |||||||||||||||||||||||  | |||||| |||||||||||||||||| |  ||||||||    
T  48607128 ttagttttggtgaatggtataacagttcatagttggggagaattattctagttaagtcacttcaagaatatattctaaaaattgattatagctaatcaat 48607227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 245 - 521
Target Start/End: Original strand, 40864922 - 40865181
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    |||||||  ||||||||||||||||| ||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40864922 aagtgattataagttgtaacttgatattatttcattttgcctaataaactattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 40865021  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    |||||||||| |||||||||| |||||||||||| |||||                   |||| ||||||||||||||| ||||||||||| ||| ||||    
T  40865022 agtatatataaattttgatttatgtgagtattgagtattt-------------------gtttgggtgaatggtataattgttcatagttagggataatt 40865102  T
Q  445 attctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||||||||| |  ||||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||||||    
T  40865103 attctagttaagtcagtgcaagaatttattctaaaaattgattatagtaatcaatttctaattccaatgacattgatta 40865181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 14498920 - 14498712
Alignment:
Q  7 accacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttaca 106  Q
    |||||| |||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| || |||   ||||||  |||| ||    
T  14498920 accacaaatcgttgatcatgttggtaacaaatctttctcacgagcttataagattattttactagcttattgacatggcttgatgactggtgtacttcca 14498821  T
Q  107 acttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaaat 206  Q
    |||||||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||||| |||||| | |||||||||| |    
T  14498820 acttttgttgatgttgataatagctttggtacacccgctattgttgaagatccacaaattaaaagttaaaatctgattaattatgccctgttgtagaagt 14498721  T
Q  207 gattgtaag 215  Q
    |||||||||    
T  14498720 gattgtaag 14498712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 245 - 519
Target Start/End: Complemental strand, 25017358 - 25017102
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    |||||||  ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017358 aagtgattataagttgtaacttgatattatgtcattttgcctaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 25017259  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    |||||||||| |||||||||||| |||||||||| |||||                    ||| | ||||||||||||| ||| ||||||| ||||||||    
T  25017258 agtatatataaattttgatttctatgagtattgagtattt-------------------atttggatgaatggtataattgtttatagttagggagaatt 25017178  T
Q  445 attctagttaagt--cattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgat 519  Q
    ||||||||||| |  ||| |||||||||||||||||||| |||| | |||||||||||  ||| |||||||||||||    
T  25017177 attctagttaaatcacatcaagaatttattctaaaaatttattatagtaatcaatttc-tattccaatgatattgat 25017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 317 - 521
Target Start/End: Original strand, 49465526 - 49465741
Alignment:
Q  317 ttgttaccataaattaaatgagcaatggagtatatata----gattttgatttc-----tgtgagtattgactatttctatgagtattgagtaatggttt 407  Q
    ||||||||||||||||||||||||||| ||||||||||    |||||||||||      |||||||||||| |||||||||||| |||||||| ||||||    
T  49465526 ttgttaccataaattaaatgagcaatgaagtatatatatatagattttgattttgattttgtgagtattgagtatttctatgagcattgagtattggttt 49465625  T
Q  408 aggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatt 505  Q
     | | || |||||||||||||||||||| | |||||||||||| ||||||||  | || |||||||||||||||||||||| | ||||| ||||||||||    
T  49465626 ggataaagggtataatagttcatagttaggaagaattattctaattaagtcacttcaacaatttattctaaaaattgattatagtaatcgatttcaaatt 49465725  T
Q  506 tcaatgatattgatta 521  Q
     |||| ||||||||||    
T  49465726 ccaattatattgatta 49465741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 317 - 521
Target Start/End: Original strand, 52754196 - 52754393
Alignment:
Q  317 ttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatg 416  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||| |||||||||||| ||||| | |||||||||       |||| |||||||     
T  52754196 ttgttaccataaattaaatgagcaatggagtatatatatatt--gatttatgtgagtattgagtatttttgtgagtattg-------gtttgggtgaata 52754286  T
Q  417 gtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgata 514  Q
    |||||||||||||||||||  |||||||||||||||||| |||  | || |||||||||||||||||||||| | ||||| |||||||||| ||||||||    
T  52754287 gtataatagttcatagttagagagaattattctagttaaatcacttaaacaatttattctaaaaattgattatagtaatcgatttcaaattccaatgata 52754386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 52754030 - 52754145
Alignment:
Q  100 acttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttg 199  Q
    |||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  52754030 actttcaacttttgttaatgttgataatagctttggtgcacccgctattgttgaagatccacaaattagaagttaaaatctgattaattatgccatgttg 52754129  T
Q  200 tagaaatgattgtaag 215  Q
    ||||| ||||||||||    
T  52754130 tagaagtgattgtaag 52754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 245 - 365
Target Start/End: Original strand, 50682661 - 50682781
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||| ||| ||||| |||||||||  ||||||||    
T  50682661 aagtgattgtaagttgtaacttgatagtatgtcattttgtctgataagttattatgaatggtgattcaaaatttattaccgtaaattaaaatagcaatgg 50682760  T
Q  345 agtatatatagattttgattt 365  Q
    |||||| ||| ||||||||||    
T  50682761 agtatacataaattttgattt 50682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 30054839 - 30054708
Alignment:
Q  55 taagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaa 154  Q
    ||||||||||||||||||||||||  |||| |||  ||| ||| ||||| |||||||||||||||||||| || | |||  |||||||| ||||||||||    
T  30054839 taagattattttactagcttattggtagggcttgacaaccggtggacttccaacttttgttgatgttggtaatggttttaatgcacccgctattgttgaa 30054740  T
Q  155 gatccataaattagaagttaaaatctgattta 186  Q
    |||||||||||||||| |||||||||||||||    
T  30054739 gatccataaattagaaattaaaatctgattta 30054708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 388 - 516
Target Start/End: Original strand, 32380047 - 32380177
Alignment:
Q  388 tgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgatt 485  Q
    |||||||| |||| |||||| |||||||| ||||||||||||||||||   | |||||||||||||||||||  | || ||||| |||||||||||||||    
T  32380047 tgagtattaagtattggtttgggtgaatgatataatagttcatagttagaaaaaattattctagttaagtcacttcaaaaatttgttctaaaaattgatt 32380146  T
Q  486 acattaatcaatttcaaatttcaatgatatt 516  Q
    | | |||||||||||||||||||||||||||    
T  32380147 atagtaatcaatttcaaatttcaatgatatt 32380177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 600 - 770
Target Start/End: Original strand, 14201490 - 14201659
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    |||||||| |||| ||||| |||| || |  ||||||||||| ||| |||| || | ||||||||||| |||| |||| |||||||||||||||||||||    
T  14201490 agaggtccataatgtttttaaaatagttttcttagaattact-acggttttttccgcaggtaaaggtggaaaacatgtagtgacagccatttgacaatga 14201588  T
Q  700 catacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||||||| |||||||||||  | ||||||||| |||||| ||   ||||||||| |||||||||||    
T  14201589 catacggatttatctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttctt 14201659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 615 - 791
Target Start/End: Original strand, 52754547 - 52754722
Alignment:
Q  615 tttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagct 714  Q
    |||| ||||||| ||||||||||||| |||| |||| || ||||||||| ||| |||| |||| ||||||| || ||| |||||||| || |||||||||    
T  52754547 ttttaaaatggtctctttagaattacctacgttttt-tccgtaggtaaatgtggaaaacatgtagtgacagtcaattggcaatgacagacagatttagct 52754645  T
Q  715 acggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    || ||||||  | |||||||||||||||  || |||||||| || |||||||||||  |||||| |||||| |||||    
T  52754646 acagaaatttgccctatagtgacggattctggctatcactataagtcaaatttcttgcaaatttcttgtagcgatac 52754722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 593 - 723
Target Start/End: Original strand, 30559772 - 30559902
Alignment:
Q  593 tgtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttg 692  Q
    |||||| |||||||| |||| ||||| ||||||| || |||||||||| || | |||||||  |||||||||||| |||| |||   |||||||||||||    
T  30559772 tgtaggtagaggtccataatgtttttaaaatggtctccttagaattacctatggttttgtcgataggtaaaggtggaaaacatgcaatgacagccatttg 30559871  T
Q  693 acaatgacatacggatttagctacggaaatt 723  Q
    ||||||| ||||||||||||||||| |||||    
T  30559872 acaatgatatacggatttagctacgaaaatt 30559902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 655 - 770
Target Start/End: Complemental strand, 44196311 - 44196196
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| |||  ||||||  ||||||||||||||| || ||||||||||||||||||  | |||||||||||||||| || | |||||    
T  44196311 gtaggtaaaggtggaaaacatgcagtgacaatcatttgacaatgacagacagatttagctacggaaatttgccctatagtgacggattttggctgtcact 44196212  T
Q  755 aaaattcaaatttctt 770  Q
    |||| |||||||||||    
T  44196211 aaaagtcaaatttctt 44196196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 609 - 778
Target Start/End: Original strand, 6078609 - 6078778
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||||| || |||||||||| |||| |||| ||   || |||||||| ||||  ||  ||||||| ||||||||||||||| || |||    
T  6078609 taatgtttttaaaatggtctccttagaattacctacggttttttcctaagataaaggtggaaaacttgcagtgacagtcatttgacaatgacagacagat 6078708  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattt 778  Q
    |||||||||||||||  | |||||||||| ||||| ||   ||||||||| ||||||||||| |||||||    
T  6078709 ttagctacggaaatttgccctatagtgacagattttggccgtcactaaaaatcaaatttcttgtaaattt 6078778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52753964 - 52754032
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttact 69  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||    
T  52753964 cattgaaccacacatcgttgatcatgttggtaataattctttctcacaggcttataagattattttact 52754032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 14498661 - 14498601
Alignment:
Q  317 ttgttaccataaattaaatgagcaatggagtata--tatagattttgatttctgtgagtat 375  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  14498661 ttgttaccataaattaaatgagcaatggagtatatatatagattttgatttatgtgagtat 14498601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 523 - 576
Target Start/End: Original strand, 49465776 - 49465829
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatatt 576  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  49465776 tggtaattttatgaattattcatctttagaatttatagtagaatagaaaatatt 49465829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 609 - 770
Target Start/End: Original strand, 49868159 - 49868319
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||||||||| ||||||| || |||||||||| |||| |||| || ||||||||||||| ||||  ||  |||| || |||||| |||||||| || |||    
T  49868159 taatatttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgatagacatttggcaatgacagacagat 49868258  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||||  |||||  | ||||||||||||||||  |   ||||||||| |||||||||||    
T  49868259 ttagctacataaatttgc-ctatagtgacggatttttgccgtcactaaaagtcaaatttctt 49868319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32379999 - 32380043
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32379999 cattgaaccacacatcgttgatcttgttggtaacaattctttctc 32380043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 32380217 - 32380269
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  32380217 tggtaattttatgaattattcatttttagaatttataatagagtagaaaatat 32380269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25017414 - 25017371
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttct 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25017414 cattgaaccacacatcgttgatcttgttggtaacaattctttct 25017371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 609 - 743
Target Start/End: Original strand, 29639854 - 29639988
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||||| |  |||||||||| |||| |||| || ||||||||||||| ||||  ||  ||||| | |||||| |||||||| || |||    
T  29639854 taatgtttttaaaatggtctacttagaattacctacggttttttccgtaggtaaaggtggaaaacttgcagtgacggtcatttggcaatgacagacagat 29639953  T
Q  709 ttagctacggaaattaactctatagtgacggattt 743  Q
    ||||||||| |||||   |||||||||||||||||    
T  29639954 ttagctacgaaaatttgttctatagtgacggattt 29639988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 723
Target Start/End: Original strand, 32380336 - 32380445
Alignment:
Q  614 ttttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||| ||||||| || |||||||||| |||  ||||||| ||||||||||||| |||| |||| |||||  ||||||| |||||||| ||  |||||||    
T  32380336 tttttaaaatggtctccttagaattacctacagttttgtccgtaggtaaaggtggaaaacatgtagtgacgaccatttggcaatgacagacaaatttagc 32380435  T
Q  714 tacggaaatt 723  Q
    ||| ||||||    
T  32380436 tacagaaatt 32380445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 52754428 - 52754480
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |||||||    
T  52754428 tggtaattttatgaattattcatctttagaatttatagtagaatataaaatat 52754480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40864866 - 40864909
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttct 44  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  40864866 cattgaaccacacatcgttgatcttgttggtaacaattatttct 40864909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 24903695 - 24903559
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||| ||||||||| || ||| | ||||||||| ||||  |||||    ||||| ||| |||||| ||   ||||     
T  24903695 gtaggtaaaggtggaaaacatgtcgtgaaagccatttggcattgagagacggatttaactacataaatttttcctatattgatggattttggccgtcaca 24903596  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  24903595 aaaattcaaatttgttgtaaatttcttgtagcgatac 24903559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 791
Target Start/End: Complemental strand, 30054274 - 30054166
Alignment:
Q  683 cagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttg 782  Q
    ||||||||||||||| ||| || |||||| ||||||||||| |||| ||||||||  |||| |||  | |||| || |||||||||||  |  |||||||    
T  30054274 cagccatttgacaatcacagacagatttaactacggaaatttactccatagtgacaaattttggtcgtaactacaagtcaaatttcttgaattttttttg 30054175  T
Q  783 tagtgatac 791  Q
    |||||||||    
T  30054174 tagtgatac 30054166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 791
Target Start/End: Original strand, 49465912 - 49466071
Alignment:
Q  631 ttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactcta 730  Q
    |||||||||| |||| |||| ||  |||||||| ||| |||| |||| ||||||||||||||||||||||| ||  | ||||| ||| |||||  |  ||    
T  49465912 ttagaattacctacgtttttttca-taggtaaatgtggaaaacatgtagtgacagccatttgacaatgacaaacaaaattagcgacgaaaattttcctta 49466010  T
Q  731 tagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||| | |||| |||| |||||| || |||||||||||  |||||| ||| || |||||    
T  49466011 tagtgatgaattttggttgtcactataagtcaaatttcttgcaaatttcttgcagcgatac 49466071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 30559683 - 30559734
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaata 574  Q
    ||||||| |||||||||||| ||||||||| ||||||||||| |||||||||    
T  30559683 tggtaatgttatgaattattaatttttagagtttatagtagaatagaaaata 30559734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 528 - 575
Target Start/End: Original strand, 48607291 - 48607338
Alignment:
Q  528 attttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  48607291 attttatgaattattcatttttagaatatctagtagaatagaaaatat 48607338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 9636602 - 9636552
Alignment:
Q  525 gtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||| ||||||||||| |||||||||| |||| ||||||||||    
T  9636602 gtaattttatgacttattcattttcagaatttataatagaatagaaaatat 9636552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 705 - 755
Target Start/End: Original strand, 14788963 - 14789013
Alignment:
Q  705 ggatttagctacggaaattaactctatagtgacggatttcggttatcacta 755  Q
    |||||||||||||  ||||||||||||||| ||||||||||| ||||||||    
T  14788963 ggatttagctacgacaattaactctatagtcacggatttcggctatcacta 14789013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 658 - 791
Target Start/End: Complemental strand, 34000509 - 34000376
Alignment:
Q  658 ggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaa 757  Q
    ||||||| || |||| ||| |||||||| |||||| |||||||| ||||||||||||||  |  ||    ||||| |||||||||| ||   |||| |||    
T  34000509 ggtaaagctggaaaacatgccgtgacagtcatttggcaatgacagacggatttagctacaaatgtttttcctataatgacggattttggccgtcacaaaa 34000410  T
Q  758 attcaaatttcttataaattttttgtagtgatac 791  Q
    | |||||||| || ||||||| ||||||||||||    
T  34000409 aatcaaatttgttgtaaatttcttgtagtgatac 34000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 712
Target Start/End: Complemental strand, 47828759 - 47828702
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttag 712  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||  |||||||||    
T  47828759 gtaggtaaaggtgaaaaacatattgtgacaaccatttgacaatgacaagcggatttag 47828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 520
Target Start/End: Original strand, 30559528 - 30559647
Alignment:
Q  402 tggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattct-aaaaattgattacattaatcaatt 498  Q
    |||||| ||||||| |||||||| |||||||  || | |||||||||||||||| |||  | ||||||| ||||| ||||||| |||| | ||||| |||    
T  30559528 tggtttgggtgaattgtataataattcatag--atagggaattattctagttaactcaattcaagaattcattctaaaaaatttattatagtaatcgatt 30559625  T
Q  499 tcaaatttcaatgatattgatt 520  Q
     |||||| ||| ||||||||||    
T  30559626 ccaaattccaacgatattgatt 30559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 2 - 521
Target Start/End: Original strand, 27168943 - 27169430
Alignment:
Q  2 attgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagac 101  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||| |  |||  ||||||| |||    
T  27168943 attgaaccacacatcgttgatcttgtttgtaacaattatttctcatgggcttataagattattttactagcttattgacaagacttgataactggtggac 27169042  T
Q  102 ttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgta 201  Q
    || || ||||||||||||||||| ||||||||||| |||||| |||| |||||||| || |||||||||||||||||||||||||||||| | |||||||    
T  27169043 ttccatcttttgttgatgttggtaatagctttggtacacccgctattattgaagattcacaaattagaagttaaaatctgatttattatgccctgttgta 27169142  T
Q  202 gaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatga 301  Q
    ||| |||||||||             |||||||||||||            |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  27169143 gaagtgattgtaa---actttttaaggtatgaagtgatt------------gtaagttgtaacttgatattatgtcattttgtctaataagctattatga 27169227  T
Q  302 atagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||| ||||||                   |||||||||     
T  27169228 atagtgattcaaattttgttaccataaattaaatgagcaacatagtatatattgattttgatttatgtgag-------------------tattgagtat 27169308  T
Q  402 tggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaattt 499  Q
    |||||| ||||||||||||||||||||||||| | | | |||||||||||||||||||  | ||||||||||| ||||||||||||| | ||||||||||    
T  27169309 tggtttgggtgaatggtataatagttcatagtcaggtaaaattattctagttaagtcacttcaagaatttattttaaaaattgattatagtaatcaattt 27169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8785810 - 8785597
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||| || |||||||  |||| || ||    
T  8785810 cattgaaccacacatcgttgatcttgttggtaacaattctttctcattg-cttataagattattttactagcttattaacggggtttgataactagtgga 8785712  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||    
T  8785711 cttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttgaagatccacaaattagaagtttaaatctgatttattatgacatgctgt 8785612  T
Q  201 agaaatgattgtaag 215  Q
    |||| ||||||||||    
T  8785611 agaagtgattgtaag 8785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3055510 - 3055300
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||  |||||||  |    
T  3055510 cattgaaccacacatcgttgatcatgttggtaacaattctttctcacgggcttataagattattttactagcttattgacatggcttgataactggttta 3055411  T
Q  101 cttacaact-tttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttg 199  Q
    |||  | |  ||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||    
T  3055410 cttctaccaatttgttgatgttgataatagctttggtgcacccgctattgttgaagatccataaattagaagttaaaatctcattaattatgtcatattg 3055311  T
Q  200 tagaaatgatt 210  Q
    ||||| |||||    
T  3055310 tagaagtgatt 3055300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 245 - 519
Target Start/End: Complemental strand, 40813640 - 40813383
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| | |||||||||| ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  40813640 aagtgattgcaagttgtaacctgatattatgtcattttgtctgataaactattatgaatagtgattcaaattttattaccataaattaaatgagtaatgg 40813541  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    ||||||| || |||||||||| || ||||||            ||||||||||       ||| ||||| ||||||||||||||||||||| ||||||||    
T  40813540 agtatatgtaaattttgatttatgcgagtat------------tgagtattga-------tttgggtgattggtataatagttcatagttacggagaatt 40813460  T
Q  445 attctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgat 519  Q
    |||||| ||||||||  | ||||||||||||||||||||||||| | ||||||||||| |||| ||| |||||||||    
T  40813459 attctaattaagtcacttcaagaatttattctaaaaattgattatagtaatcaatttcgaattccaacgatattgat 40813383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 11852743 - 11852587
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||| | ||    
T  11852743 cattgaaccacacatctttcatcttgttggtaataattctttctcacggacttataagattattttactagcttattgacaggacttgacaactgatgga 11852644  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagat 157  Q
     ||   ||||||||||||||| || |||| ||||||||||||  |||||||||||||    
T  11852643 tttttcacttttgttgatgttagtaatagttttggtgcacccactattgttgaagat 11852587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 389 - 521
Target Start/End: Original strand, 15731094 - 15731227
Alignment:
Q  389 gagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgatta 486  Q
    ||||||| |||| |||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||||    
T  15731094 gagtattaagtattggtttgggtgaatagtataatagttcatagtta-ggagaattattcaagttaagtcactttaagaatttattcaaaaaattgatta 15731192  T
Q  487 cattaatcaatttcaaatttcaatgatattgatta 521  Q
     | |||||||||||||||| |||||||||||||||    
T  15731193 tagtaatcaatttcaaattccaatgatattgatta 15731227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 594 - 791
Target Start/End: Complemental strand, 19576489 - 19576292
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||| ||||| ||||||| || |||||||||| |||| |||| || ||||||||||||| |||| |||   |||||| ||||||     
T  19576489 gtaggtagaggtccataatgtttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcaatgacagtcatttgg 19576390  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||||| || ||||||||||||||||||  | |||||||||||||||| ||   ||||||||| ||||||||||| ||||||||| |||| |||||    
T  19576389 caatgacagacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttttcgtagcgatac 19576292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23244717 - 23244800
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacaggg 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  23244717 cattgaacgacacatcgttgatcttgttggtaacaattctttctcattggcttataagattattttactagcttattgacaggg 23244800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 600 - 778
Target Start/End: Complemental strand, 8911666 - 8911488
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    |||||||| |||||||||| ||||||| || |||||||||| |||| |||| |  ||||||||||||| |||| |||  ||||||| |||||| ||||||    
T  8911666 agaggtccataatatttttaaaatggtctcattagaattacctacggtttttttcgtaggtaaaggtggaaaacatgcagtgacagtcatttggcaatga 8911567  T
Q  700 catacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattt 778  Q
    || ||  |||||||||||||||||  | ||||||||||| |||| ||   ||||||||| ||||||||||| |||||||    
T  8911566 caaacaaatttagctacggaaatttgccctatagtgacgaattttggccgtcactaaaagtcaaatttcttgtaaattt 8911488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 381 - 521
Target Start/End: Complemental strand, 8785449 - 8785307
Alignment:
Q  381 atttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaa 478  Q
    |||||| |||||||||| || ||||||  ||||||| ||||||||||||||||||   | ||||||| ||||||||||| |  |||||| ||||||||||    
T  8785449 atttctgtgagtattgaatattggtttttgtgaatgatataatagttcatagttagaaaaaattattttagttaagtcacttcaagaatgtattctaaaa 8785350  T
Q  479 attgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||||| | |||||||||| |||||  ||||||||||||||    
T  8785349 attgattatagtaatcaatttaaaattctaatgatattgatta 8785307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 631 - 785
Target Start/End: Complemental strand, 3052775 - 3052622
Alignment:
Q  631 ttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactcta 730  Q
    |||||||||| |||| |||| || ||||||||| ||| |||| |||| |||||||| |||||||||||||| || |||||||||||| |||||  | |||    
T  3052775 ttagaattacctacgttttt-tccgtaggtaaatgtggaaaacatgtggtgacagctatttgacaatgacagacagatttagctacgaaaattttcccta 3052677  T
Q  731 tagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtag 785  Q
    || |||||||||| |  | |||||| || |||||||| ||| |||||| ||||||    
T  3052676 taatgacggattttgactgtcactataagtcaaattttttacaaatttcttgtag 3052622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 40813240 - 40813162
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaa 672  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| | ||||||||||| ||||    
T  40813240 gtaggtagaggtccttaatgtttttaaaatggtatctttagaattacctacgattttgtccgcaggtaaaggtggaaaa 40813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 600 - 701
Target Start/End: Original strand, 23244927 - 23245028
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    ||||||||||||| ||||| |||||||||  |||||||||| |||| ||||||| ||||||||||||| |||| |||  |||| | ||||||||||||||    
T  23244927 agaggtccttaatgtttttaaaatggtatgcttagaattacctacggttttgtccgtaggtaaaggtggaaaacatgcagtgataaccatttgacaatga 23245026  T
Q  700 ca 701  Q
    ||    
T  23245027 ca 23245028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 27169465 - 27169517
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27169465 tggtaattttatgaattattcatttttagaatttatagtagaatagaaaatat 27169517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 8785484 - 8785433
Alignment:
Q  327 aaattaaatgagcaatggagtatatatagattttgatttctgtgagtattga 378  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8785484 aaattaaatgagcaatgaagtatatatagattttgatttctgtgagtattga 8785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 15731032 - 15731089
Alignment:
Q  308 attcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgattt 365  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||    
T  15731032 attcaaattttattaccataaagtaaatgagcaatgaagtatatatagattttgattt 15731089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 655 - 791
Target Start/End: Original strand, 13760184 - 13760320
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| ||||| ||| |||||||||||||| || | |||| |||||||||||||  |||||    ||||| |||||||||| ||   ||||     
T  13760184 gtaggtaaaggtggaaaatttgttgtgacagccatttggcactaacatgcggatttagctacataaatttttcctatattgacggattttggccgtcaca 13760283  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  13760284 aaaattcaaatttgttgtaaatttgttgtagcgatac 13760320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 15731267 - 15731319
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  15731267 tggtaattttatgaattattcatttttaaaatttatagtagaatagaaaatat 15731319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 40813725 - 40813661
Alignment:
Q  151 tgaagatccataaattagaagttaaaatctgatttat--tatgtcatgttgtagaaatgattgta 213  Q
    ||||||||||||||||||||||| |||| ||||||||  |||||| |||||||||||||||||||    
T  40813725 tgaagatccataaattagaagttgaaatttgatttattatatgtcctgttgtagaaatgattgta 40813661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 429 - 514
Target Start/End: Complemental strand, 3055122 - 3055035
Alignment:
Q  429 atagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgata 514  Q
    ||||||| |||||||||||||||||||||||  | || |||||||||||||| ||||||| | ||||  |||||||||| ||||||||    
T  3055122 atagttagggagaattattctagttaagtcacttcaacaatttattctaaaagttgattatagtaattgatttcaaattccaatgata 3055035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 8785272 - 8785220
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8785272 tggtcattttatgaattattcatttttagaatttatagtaaaatagaaaatat 8785220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 12448201 - 12448065
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||||||||| || ||||| | | ||||||||||  |||||    ||||| ||| |||||| ||   ||||     
T  12448201 gtaggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagatgaatttagctacataaatttttcctatattgatggattttggccgtcaca 12448102  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  12448101 aaaattcaaatttgttgtaaatttcttgtagcgatac 12448065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 40813343 - 40813291
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  40813343 tggtaattttatcaattatttatttttagaatttatagtagaatagaaaatat 40813291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 600 - 715
Target Start/End: Original strand, 22713783 - 22713897
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    |||| ||| |||| ||||| ||||||| ||||||||||||| |||| ||||||  || | |||| ||| |||| |||   ||||| ||||||||||||||    
T  22713783 agagatccataatgtttttaaaatggtctctttagaattacatacg-ttttgtgcgtcgataaaagtggaaaacatgcaatgacaaccatttgacaatga 22713881  T
Q  700 catacggatttagcta 715  Q
    ||||||||||||||||    
T  22713882 catacggatttagcta 22713897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 657 - 716
Target Start/End: Original strand, 36704829 - 36704888
Alignment:
Q  657 aggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctac 716  Q
    ||||||||||  |||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  36704829 aggtaaaggtagaaaacatgtcgtgacagccatttgacactgacataaggatttagctac 36704888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 8785580 - 8785522
Alignment:
Q  247 gtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatag 305  Q
    ||||| ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  8785580 gtgattgtaaggtgtaatttgatattatgtcattttgtctaataagctattatgaatag 8785522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 723
Target Start/End: Original strand, 27169579 - 27169692
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||||| || ||||| |||| |||| |||||| |||||||||| ||| |||| |||  |||||| |||||||||||||||| ||| ||    
T  27169579 taatgtttttaaaatggtctccttagagttacatacg-ttttgtttgtaggtaaaagtggaaaacatgcagtgacaaccatttgacaatgacaaacgaat 27169677  T
Q  709 ttagctacggaaatt 723  Q
    ||| ||||| |||||    
T  27169678 ttaactacgaaaatt 27169692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 713
Target Start/End: Original strand, 31649154 - 31649212
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | |||||||||    
T  31649154 gtaggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagc 31649212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 3054993 - 3054952
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtaga 564  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  3054993 tggtaattttatgaattattcatctttagaatttatagtaga 3054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 791
Target Start/End: Original strand, 6451831 - 6451966
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| |||||||||||| ||||||||| ||| | ||| ||||||||||  |||||     |||| |||||||||| ||   ||||     
T  6451831 gtaggtaaaggtggaaaacatgtcgtgacag-catttgacactgataaacgaatttagctacataaatttttcttatattgacggattttggccgtcaca 6451929  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  6451930 aaaattcaaatttgttgtaaatttcttgtagcgatac 6451966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 11849766 - 11849702
Alignment:
Q  151 tgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaag 215  Q
    |||||| ||| ||||||||||||||||| ||| |||||||| | |||||||||| ||||||||||    
T  11849766 tgaagacccacaaattagaagttaaaatttgagttattatgccctgttgtagaagtgattgtaag 11849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 4785215 - 4785137
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaa 672  Q
    ||||| |||||||| |||| ||||| ||||||  || ||||||||||||||| |||| || ||| ||||||||||||||    
T  4785215 gtaggtagaggtccataatgtttttaaaatggactccttagaattacttacggttttttccgtatgtaaaggtgaaaaa 4785137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 723
Target Start/End: Original strand, 15731367 - 15731495
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||||||||| ||||||  |||| ||||||||  | | ||| ||| |||| |||||||| |||| |||  |||||| ||| ||||    
T  15731367 gtaggtagaggtccataatatttttaaaatggcctctt-agaattaccaatggtttcgtccgtagttaaaggtggaaaacatgcagtgacaaccacttga 15731465  T
Q  694 caatgacatacggatttagctacggaaatt 723  Q
    ||| || | | |||||||||||||||||||    
T  15731466 caacgatagatggatttagctacggaaatt 15731495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 743
Target Start/End: Original strand, 39021589 - 39021717
Alignment:
Q  614 ttttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||| ||||||| || |||||||||| |||| |||| || |||| ||||| || |||| |||  ||||| | ||||||  ||||||| || ||||||||    
T  39021589 tttttaaaatggtctccttagaattacctacggttttttccgtagttaaagctggaaaa-atgcggtgacggtcatttggtaatgacagacagatttagc 39021687  T
Q  714 tacggaaattaactctatagtgacggattt 743  Q
    ||||||||||  | ||||||||| ||||||    
T  39021688 tacggaaatttgccctatagtgatggattt 39021717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 11849720 - 11849681
Alignment:
Q  239 ttgtaaaagtgatagtaagttgtaacttgatagtatgtca 278  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  11849720 ttgtagaagtgattgtaagttgtaacttgatagtatgtca 11849681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 791
Target Start/End: Original strand, 15736982 - 15737023
Alignment:
Q  750 tcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||    
T  15736982 tcactaaaagtcaaatttcttgtaaatttcttgtagtgatac 15737023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 147 - 521
Target Start/End: Original strand, 8035702 - 8036079
Alignment:
Q  147 ttgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaa 246  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||| ||||||||||            ||||||||||||| || ||    
T  8035702 ttgttgaagatccacaaattagaagttaaaatatgatttattatgccctgttgtagaagtgattgtaag---tttttttaggtatgaagtgattttagaa 8035798  T
Q  247 gtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggag 346  Q
    ||||| ||||||| |||||||||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  8035799 gtgattgtaagttataacttgatagtatgtcattttgtctgataagctattaggaatcgtgattcaaattttgttaccataaattaaatgagcaatggag 8035898  T
Q  347 tatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatgg----tataatagttcatagttatggagaa 442  Q
    |||||||||||||||| || | |||||||||| ||||||||||||||||||||| ||| || ||||||||     |||||||||||||||||| ||||||    
T  8035899 tatatatagattttgaattttatgagtattgagtatttctatgagtattgagtattggatttggtgaatgaatgatataatagttcatagttagggagaa 8035998  T
Q  443 ttattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||    
T  8035999 ttattctagttaagtcacttcaagaatttattctaaaaattgattatagtaatcaatttcaaattccaataatattgatta 8036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 99 - 521
Target Start/End: Complemental strand, 25340409 - 25340011
Alignment:
Q  99 gacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgtt 198  Q
    ||||| |||||||||||||||||||| ||| |||||||| ||||    ||||||||||||||  |||||||||||||||||||||||||||||   ||||    
T  25340409 gactttcaacttttgttgatgttggtaataactttggtgaaccc----ttgttgaagatccacgaattagaagttaaaatctgatttattatgcgttgtt 25340314  T
Q  199 gtagaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctatta 298  Q
    |||||| |||||||||             |||||||||||||||| ||||||| |||| |||||| |||||||||||||||||||| |||||| ||||||    
T  25340313 gtagaagtgattgtaa---tttttttaaggtatgaagtgattgtataagtgattgtaaattgtaatttgatagtatgtcattttgtctaataaactatta 25340217  T
Q  299 tgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgag 398  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||            ||||||||||     
T  25340216 tgaatagtgattcaaattttgttaccataaataaaatgagcaatagagtatctatagattttgatttctgtgagtat------------tgagtattga- 25340130  T
Q  399 taatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaa 496  Q
          ||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| ||  | || |||||||||||||||||||||||| |||||||    
T  25340129 ------tttgggtaaattgtataatagttcatagttagggagaattattctagttaagccacttcaaaaatttattctaaaaattgattacaataatcaa 25340036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12180672 - 12180886
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |||  ||||| | ||    
T  12180672 cattgaaccacacaatgttgatcttgttggtaacaattttttctcacgggcttataagattattttaccagcttattgacagggcttgataactgatgga 12180771  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| ||||||||||||||||| || ||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||   || |||    
T  12180772 ctttcaacttttgttgatgtttgtaataactttggcgcacccgctattgttgaagatccacaaattagaagttaaaatctgattcattatgctttgatgt 12180871  T
Q  201 agaaatgattgtaag 215  Q
    |||||||||||||||    
T  12180872 agaaatgattgtaag 12180886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 279 - 521
Target Start/End: Original strand, 12180922 - 12181159
Alignment:
Q  279 ttttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattga 378  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||    
T  12180922 ttttgtctaataagctattataaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatgtaaattttgatttatgcgagtattga 12181021  T
Q  379 ctatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaa 476  Q
     ||||||  |||||||       |||||| | ||||||||||||||||||||||||| |||||||||||||| ||||| ||  | |||||||||||||||    
T  12181022 gtatttccgtgagtat-------tggtttggatgaatggtataatagttcatagttagggagaattattctaattaagccacttcaagaatttattctaa 12181114  T
Q  477 aaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||||   |||||||||| ||||| |||| ||||||||||    
T  12181115 aaattgattattgtaatcaattttaaattccaataatattgatta 12181159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11970988 - 11970774
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||  |||||||  |||| || ||    
T  11970988 cattgaaccacacatcgttgatcttattggtaacaattctttctcacatacttataaaattattttactagattatagatggggtttgacaactagtgga 11970889  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    |||   ||||||| |||||||||| ||||||||| |||||||| |||| ||||||||| | ||||||||| ||||||| |||||||||||| | ||||||    
T  11970888 cttcatacttttgctgatgttggtaatagctttgctgcacccgctatttttgaagatctagaaattagaaattaaaatttgatttattatgccctgttgt 11970789  T
Q  201 agaaatgattgtaag 215  Q
    |||| ||||||||||    
T  11970788 agaagtgattgtaag 11970774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 390 - 575
Target Start/End: Complemental strand, 30621184 - 30620986
Alignment:
Q  390 agtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattac 487  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||| ||||||||  | || ||||||||||||||||||||||     
T  30621184 agtattgagtattggtttgagtgaatggtataatagttcatagttagggagaattattctaattaagtcacttcaacaatttattctaaaaattgattat 30621085  T
Q  488 attaatcaatttcaaatttcaatgatattgattaa-----------tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    | ||||| |||| ||||| ||||||||||||||||           || |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  30621084 agtaatcgatttaaaattccaatgatattgattaaattaattttagtgataattttatgaattattcatatttagaatttatagtagaatagaaaatat 30620986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 602 - 770
Target Start/End: Original strand, 12181299 - 12181466
Alignment:
Q  602 aggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgaca 701  Q
    |||||| |||| ||||| ||||||| |  || ||||||| |||| ||||||| ||||||||||||| ||||||||  | |||| ||||||||||||||||    
T  12181299 aggtccgtaatgtttttaaaatggtctacttggaattacatacg-ttttgtccgtaggtaaaggtggaaaatatgcagcgacatccatttgacaatgaca 12181397  T
Q  702 tacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
     ||||||||||||||||||||| |  ||| ||||||||||||  ||| |||||| || | |||||||||    
T  12181398 gacggatttagctacggaaatttatcctagagtgacggatttttgttgtcactacaagttaaatttctt 12181466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 594 - 770
Target Start/End: Complemental strand, 2226537 - 2226361
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||| | |||||||||| |||| || || |||||||||| |||  |||| || ||||||||||||| |||| || | | ||||  || |||     
T  2226537 gtaggtagaggttcataatatttttaaaatcgtctccttagaattacctacagttttttccgtaggtaaaggtggaaaacatatggcgacaatcacttgg 2226438  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||| || ||||||||||||||||||  | |||||||||||||||| ||   ||||||||| |||||||||||    
T  2226437 caatgacagacagatttagctacggaaatttgcactatagtgacggattttggccgtcactaaaagtcaaatttctt 2226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 595 - 773
Target Start/End: Original strand, 7990359 - 7990538
Alignment:
Q  595 taggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgt-ctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    |||| |||||||  |||| ||||| ||||||| || |||||||||| |||| |||| | | ||||||||| ||| |||| |||  ||| ||| ||||||     
T  7990359 taggtagaggtctataatgtttttaaaatggtctccttagaattacctacggtttttttccgtaggtaaatgtggaaaacatgcagtggcagtcatttgg 7990458  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttata 773  Q
    |||||||| |  ||||||||||||||||||    || ||||||||||||| ||   ||||||||| ||||||||||||||    
T  7990459 caatgacagatagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtcaaatttcttata 7990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 525 - 575
Target Start/End: Original strand, 12181196 - 12181246
Alignment:
Q  525 gtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  12181196 gtaattttatgaattattcctttttagaatttatagtagaatagaaaatat 12181246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 8035493 - 8035551
Alignment:
Q  99 gacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagat 157  Q
    ||||| |||||||||||||||||||| |||||||||||||||| | || ||||||||||    
T  8035493 gacttccaacttttgttgatgttggtaatagctttggtgcacctgctactgttgaagat 8035551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 716
Target Start/End: Original strand, 25558532 - 25558593
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctac 716  Q
    ||||||||| ||| ||||||||||||||||||||||||| | ||||| | ||||||||||||    
T  25558532 gtaggtaaaagtggaaaatatgtcgtgacagccatttgatattgacagatggatttagctac 25558593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 25599154 - 25599115
Alignment:
Q  315 ttttgttaccataaattaaatgagcaatggagtatatata 354  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25599154 ttttgtcaccataaattaaatgagcaatggagtatatata 25599115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 656 - 755
Target Start/End: Complemental strand, 30620876 - 30620777
Alignment:
Q  656 taggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcacta 755  Q
    |||||||| ||| |||| |||| |||||| ||||||  ||| |||| || ||||||||||| ||||||  | |||||||||||||||| |||| ||||||    
T  30620876 taggtaaatgtggaaaacatgtagtgacatccatttagcaacgacagacagatttagctacagaaatttgccctatagtgacggattttggttgtcacta 30620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 723
Target Start/End: Complemental strand, 12648888 - 12648760
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| || ||||| |||| ||||| ||||||| || ||| ||| || ||| |||||||| ||||||||| ||| |||| |||  ||||||  ||||||     
T  12648888 gtaggtagtggtccataatgtttttaaaatggtctccttataataacctac-attttgtccgtaggtaaacgtggaaaacatgcagtgacaaacatttgg 12648790  T
Q  694 caatgacatacggatttagctacggaaatt 723  Q
    |||||||| ||  |||||||||||||||||    
T  12648789 caatgacagacatatttagctacggaaatt 12648760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 530 - 571
Target Start/End: Complemental strand, 25339970 - 25339929
Alignment:
Q  530 tttatgaattattcatttttagaatttatagtagattagaaa 571  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  25339970 tttatgaattattcatttttagaatttaaagtagaatagaaa 25339929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 8035438 - 8035480
Alignment:
Q  27 ttggtaacaattctttctcacggacttataagattattttact 69  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  8035438 ttggtaacaattctttctcacgagcatataagattattttact 8035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 647 - 784
Target Start/End: Complemental strand, 23302858 - 23302724
Alignment:
Q  647 ttttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcgg 746  Q
    |||| ||||||||||||| || ||||||||  ||||||| |||||  || ||||| ||  |||||||||| |||||| || |||   |||| ||||| ||    
T  23302858 ttttttctgtaggtaaagatggaaaatatgcagtgacagtcattttgca-tgacaaacaaatttagctacagaaatttaccctaa--tgacagattttgg 23302762  T
Q  747 ttatcactaaaattcaaatttcttataaattttttgta 784  Q
      |||||||||| ||||||||| | |||||||||||||    
T  23302761 ccatcactaaaagtcaaatttcgtgtaaattttttgta 23302724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 12539602 - 12539116
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || || |||  ||||||| ||    
T  12539602 cattgaaccacgcattgttgatcttgttggtaacaattctttctcacgggcttataagattcttttactagcttattggcaaggcttgataactggtgga 12539503  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||| | ||||||    
T  12539502 cttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttaaagatccaaaaattagaagataaaatctgatttattatgccgtgttgt 12539403  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    | || ||||| || |            |||||||||||||            |||||||||||||||||| ||||||||||||| |||||||||||||||    
T  12539402 ataagtgattatatg---tttttttaggtatgaagtgatt------------gtaagttgtaacttgatattatgtcattttgtctaataagctattatg 12539318  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||   | ||||                   ||||||||    
T  12539317 aatagtgattcaaattttgttaccataaattaaatga--aatggagtatatataaattttaattcaggagagt-------------------attgagta 12539239  T
Q  401 atggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatt 498  Q
     |||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||  | |||| |||||||||||||||||||| | |||||||||    
T  12539238 ttggtttgggtgaatagtataatagttcatagttaaggagaattattctagttaagtcacttcaagattttattctaaaaattgattataataatcaatt 12539139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 245 - 521
Target Start/End: Complemental strand, 28841212 - 28840934
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| || ||||||||||||||||||| | |||    
T  28841212 aagtgattgtaagttgtaacttgatagtatgtcattttgtctaataagctattatgactagtgaatcaaatcttattaccataaattaaatgagtagtgg 28841113  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    ||||| ||||||||||||||| |||||||||||| ||||| | || ||||||| || |||||| ||||||||||||||||||||||||||| ||||||||    
T  28841112 agtatgtatagattttgatttatgtgagtattgagtatttatgtgggtattgaatattggtttgggtgaatggtataatagttcatagttagggagaatt 28841013  T
Q  445 attctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||| |||||| ||  | ||||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||    
T  28841012 attcttgttaaggcacttcaagaatttattctaaaaattgattatagtagtcaatttcaaattccaatgatattgatta 28840934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 34317614 - 34317797
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||  | |||  ||||||| ||    
T  34317614 cattgaaccacacatcattgatcttgttggtaacaattctttctcatggatttataagattcttttactagcttattgacaaagcttgataactggtgga 34317713  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatt 184  Q
    ||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  34317714 cttccaacttttgttgatgttggtaatagctttggttcacccgctattgttgaagatccacaaattagaagttaaaatctgatt 34317797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 34318149 - 34318278
Alignment:
Q  254 taagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatat 353  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34318149 taagttgtaacttgatattatgtcattttgtctagtaagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggactatatat 34318248  T
Q  354 agattttgatttctgtgagtattgactatt 383  Q
    | ||||| |||| | ||| |||||| ||||    
T  34318249 aaattttaatttttttgaatattgattatt 34318278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 388 - 521
Target Start/End: Complemental strand, 23866772 - 23866637
Alignment:
Q  388 tgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgatt 485  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||||  | || |||||||||||||||||||||    
T  23866772 tgagtattgagtattggtttgggtgaatggtataatagtttatagtcagggagaattattctagttaagtcacttcaacaatttattctaaaaattgatt 23866673  T
Q  486 acattaatcaatttcaaatttcaatgatattgatta 521  Q
      | ||||| ||||||||||| ||||||||||||||    
T  23866672 ttagtaatcgatttcaaatttaaatgatattgatta 23866637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 620 - 784
Target Start/End: Original strand, 27925765 - 27925928
Alignment:
Q  620 aaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacgga 719  Q
    ||||||| || |||||||||| |||| ||||||| ||||||||| ||| |||| ||| ||||||| |||||||||||||||| |||||||||||||||||    
T  27925765 aaatggtctccttagaattacctacg-ttttgtccgtaggtaaatgtggaaaacatgccgtgacaaccatttgacaatgacagacggatttagctacgga 27925863  T
Q  720 aattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgta 784  Q
    ||||  | |||||||||||| ||| |||| | |||| || ||||||||||| ||||||| |||||    
T  27925864 aatttgccctatagtgacggtttttggttgttactacaagtcaaatttcttctaaatttcttgta 27925928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 594 - 770
Target Start/End: Original strand, 31708860 - 31709035
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||| ||| |||| ||||| ||||||| || |||||||||| |||| |||||||| |||||||||||| ||||  ||  |||||| ||  |||     
T  31708860 gtaggtagagatccataatgtttttaaaatggtctccttagaattacctacg-ttttgtctctaggtaaaggtggaaaacttgcagtgacaaccgcttgg 31708958  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||||| |||||||||||||||||||  | |||||||||||||||| |||| |||||| || |||||||||||    
T  31708959 caatgacataaggatttagctacggaaatttgccctatagtgacggattttggttgtcactacaaatcaaatttctt 31709035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 594 - 791
Target Start/End: Complemental strand, 30547106 - 30546911
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||||||||| |||| || || ||  ||||||||||| |||| || ||||||||||||| |||| |||  |||||| ||||||      
T  30547106 gtaggtagaggtccataatatttttaaaatagtctccttcaaattacttacg-ttttatccgtaggtaaaggtggaaaacatgcagtgacaaccatttcg 30547008  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||||| ||  ||||||||||  |||||  | || ||||||||||||| || | ||| || || ||||||||||||||||||| ||||||||||||    
T  30547007 caatgacagacaaatttagctacataaatttgccct-tagtgacggattttggctgtcattacaagtcaaatttcttataaatttcttgtagtgatac 30546911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 427 - 521
Target Start/End: Original strand, 31708642 - 31708738
Alignment:
Q  427 tcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||| | ||||||||||||||||||||| |  |||||||||||||||||||| |||| | |||||||||| ||||| |||||||||||||||    
T  31708642 tcatagttaggtagaattattctagttaagtcacttcaagaatttattctaaaaatttattatagtaatcaattttaaattccaatgatattgatta 31708738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 31708764 - 31708813
Alignment:
Q  526 taattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31708764 taattttatgaattattcatttttagaatttatagtagaatagaaaatat 31708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 594 - 784
Target Start/End: Original strand, 31410433 - 31410623
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgt-ctgtaggtaaaggtgaaaaatatgtcgtgacagccatttg 692  Q
    ||||| |||| ||| |||| ||||  ||||| | || |||||||||| |||| |||| | | ||||||||||||| |||| | |  ||||||  ||||||    
T  31410433 gtaggtagagatccataatgttttaaaaatgatctccttagaattacctacggtttttttccgtaggtaaaggtggaaaacaagcagtgacaatcatttg 31410532  T
Q  693 acaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgta 784  Q
     |||| ||| || ||||||||||||||||||  | |||||||||| ||||| ||   ||||||||||||||||||||| ||||||| |||||    
T  31410533 gcaataaca-acagatttagctacggaaatttgccctatagtgacagattttggccgtcactaaaattcaaatttcttgtaaatttcttgta 31410623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 525 - 575
Target Start/End: Complemental strand, 23866600 - 23866550
Alignment:
Q  525 gtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  23866600 gtaattttatgaattattcatctttagaatttatagtagaatagaaaatat 23866550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 576
Target Start/End: Complemental strand, 28840615 - 28840562
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatatt 576  Q
    ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||    
T  28840615 tggtaatttgatgaattattcatttttagaattcatagtagaatagaaaatatt 28840562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 402 - 521
Target Start/End: Original strand, 34318278 - 34318387
Alignment:
Q  402 tggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcattaagaatttattctaaaaattgattacattaatcaatttca 501  Q
    |||||| ||||||| |||||||||| ||||||||  ||||||||||||          | |||||||||||||||| |||||||| | ||||||||||||    
T  34318278 tggtttgggtgaatagtataatagtccatagttacagagaattattct----------tcaagaatttattctaaatattgattatagtaatcaatttca 34318367  T
Q  502 aatttcaatgatattgatta 521  Q
    |||| ||| |||||||||||    
T  34318368 aattccaacgatattgatta 34318387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 34318422 - 34318470
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaa 571  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  34318422 tggtaattttatgaattattcattttaagaatttatagtagaatagaaa 34318470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 791
Target Start/End: Original strand, 31162175 - 31162307
Alignment:
Q  659 gtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaa 758  Q
    ||||||||| |||| ||||||||||||| ||||| ||  |||| || |||||||||||  |||||    ||||| |||||||||| ||   |||| ||||    
T  31162175 gtaaaggtggaaaacatgtcgtgacagctatttggcaccgacaaacagatttagctacataaatttttcctatattgacggattttggccgtcacaaaaa 31162274  T
Q  759 ttcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||| || ||||||| |||||| |||||    
T  31162275 ttcaaatttgttgtaaatttcttgtagcgatac 31162307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 686 - 773
Target Start/End: Original strand, 34318612 - 34318699
Alignment:
Q  686 ccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttata 773  Q
    ||||||| |||||||  | ||||||| |||||||||||  ||||||||| |||||||| |||  |||||| || ||||||||||||||    
T  34318612 ccatttggcaatgactgatggatttaactacggaaattttctctatagtcacggattttggtcgtcactacaaatcaaatttcttata 34318699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 659 - 790
Target Start/End: Original strand, 45262189 - 45262320
Alignment:
Q  659 gtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaa 758  Q
    |||||||||||||| |||   ||||| |||||| ||||| ||| ||| ||||| |||  ||||||||| ||||| ||||| ||||  | ||| |||| ||    
T  45262189 gtaaaggtgaaaaacatgcaatgacaaccatttaacaattacagacgaatttacctagtgaaattaaccctataatgacgaattttagctattactataa 45262288  T
Q  759 ttcaaatttcttataaattttttgtagtgata 790  Q
     ||||||||| ||||||||| || ||||||||    
T  45262289 gtcaaatttcatataaatttcttatagtgata 45262320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-99; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 3857023 - 3857436
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||  ||||||| ||    
T  3857023 catttaaccacacatcgttgatcttgatggtaacaattatttctcacgggcttataagattattttactagcttattgacagggcttgataactggtgga 3857122  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| ||||||||||||||||| || |||||||||||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||    
T  3857123 cttccaacttttgttgatgttcgtaatagctttggtgcacctgctattgttgaagatccaaaaattagaagttaaaatttgatttattatgtcttattgt 3857222  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            ||||||| ||| ||||            ||||||||||||||| ||||||||||||| |||||||||||        
T  3857223 agaagtgattgtaag---tttttttaggtatgaaatgagtgta------------agttgtaacttgatattatgtcattttgtctaataagctat---- 3857303  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||| |||||||||    
T  3857304 -------attcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctatgagtattgagtatttttgtgaatattgagta 3857396  T
Q  401 atggtttaggtgaatggtataatagttcatagttatggaga 441  Q
     ||||||| || ||||| ||||||||||||| ||| |||||    
T  3857397 ttggttta-gtaaatggcataatagttcataattagggaga 3857436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 131 - 521
Target Start/End: Complemental strand, 55194947 - 55194570
Alignment:
Q  131 tttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaagannnnnnnnnnngta 230  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||||||            |||    
T  55194947 tttggtgcacccgctattgttgaagatccacaaattagaagttaaaatctgatttattatgccctgttgtagaagtgattgtaag---tttttttaggta 55194851  T
Q  231 tgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaat 330  Q
    |||| |||||||||            |||||||||||||| ||||| |||||||  |||||||||||||||| ||||||||||||||||||||| | |||    
T  55194850 tgaactgattgtaa------------gttgtaacttgatattatgtaattttgtccaataagctattatgaacagtgattcaaattttgttaccgtgaat 55194763  T
Q  331 taaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcat 430  Q
    ||||| ||||||| ||||||||||||||||||||| |||| ||||||| ||||||  |||||||| || | |||||| ||||||||||||||||||||||    
T  55194762 taaataagcaatgaagtatatatagattttgatttatgtgggtattgagtatttccgtgagtattaagcattggtttgggtgaatggtataatagttcat 55194663  T
Q  431 agttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    ||||| |||||||||||||||||||||||  | ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  55194662 agttagggagaattattctagttaagtcacttcaagaatttattctaaaaattgattatagtaatcaatttcaaattccaatgatattgatta 55194570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 298 - 575
Target Start/End: Complemental strand, 22527311 - 22527015
Alignment:
Q  298 atgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgag------ 391  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||          
T  22527311 atgaataatgattcaaattttgataccataaattaaatgagcaatggagtatatatagattttgatttttgtgagtattgagtatttatgtgagtattac 22527212  T
Q  392 tattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacat 489  Q
    ||||||||| || |||  ||||||| |||||||||||| |||||||||||||||||||||||||||||  | || | ||||||||||| ||||||||||     
T  22527211 tattgagtattgttttgagtgaatgatataatagttcacagttatggagaattattctagttaagtcacttcaaaattttattctaaatattgattacag 22527112  T
Q  490 taatcaatttcaaatttcaatgatattgattaa-----------tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
     ||||||||||||||| |||| |||||||||||           ||||||||||||||||||||||||| |||| |||| |||||| || |||||||    
T  22527111 gaatcaatttcaaattccaattatattgattaaactaattttcgtggtaattttatgaattattcatttatagattttaaagtagaataaaaaatat 22527015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 244 - 521
Target Start/End: Complemental strand, 51261790 - 51261530
Alignment:
Q  244 aaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatg 343  Q
    |||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |    
T  51261790 aaagtgattgtaagttgtatcttgatagtatgtaattttgtctaataagctattatgaacagtgattcaaattttgttaccataaattaaatatgcaacg 51261691  T
Q  344 gagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaat 443  Q
    ||||||||||||||||||||||| ||||||||||| |||                   || ||| ||||||||||| ||||||||||||||| ||| |||    
T  51261690 gagtatatatagattttgatttcagtgagtattgaatat-------------------tgatttgggtgaatggtagaatagttcatagttagggaaaat 51261610  T
Q  444 tattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||| |||||||||||  | || |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||    
T  51261609 tattttagttaagtcacttcaaaaatttattctcaaaattgattatattaatcaatttcaaattccaatgatattgatta 51261530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 51262007 - 51261817
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||  ||||||| ||    
T  51262007 cattgtaccacacttcgttgatcttgttggtaacaattctttttcacgagcttattatattattttactagcttattgacagggtttgacaactggtgga 51261908  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatg 191  Q
    ||| |||||||||||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||||| |||||||||||||||    
T  51261907 cttccaacttttgttgatgttggtaatagctttgatgcacctgctattgttgaagatccacaaattagaagttaagatctgatttattatg 51261817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 236 - 521
Target Start/End: Complemental strand, 15667818 - 15667552
Alignment:
Q  236 tgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaat 335  Q
    |||||||| || |||| |||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  15667818 tgattgtagaaatgattgtaagttgtaactt-atagtatgtcattttatctaata-gctattatgaacagtgattcaaattttgttacgataaattaaat 15667721  T
Q  336 gagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagtta 435  Q
    ||||||  ||||||||| |||||||||||||||||||||                   ||||||| |||||| || ||||||||| |||||||||||||     
T  15667720 gagcaacagagtatatagagattttgatttctgtgagta-------------------ttgagtattggtttgggcgaatggtatcatagttcatagttt 15667640  T
Q  436 tggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
     ||||||||||| |||||||||||   |||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||    
T  15667639 gggagaattattttagttaagtcactataagaatttattcttaaaattgattataataatcaatttcaaatttcgatgatattgatta 15667552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 9741360 - 9741255
Alignment:
Q  278 attttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattg 377  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |||||||||||    
T  9741360 attttgtctaataagctattatgaatagtgattcaaatttggttaccataaattgaaagagcaatggagtatatataaattttgatttttgtgagtattg 9741261  T
Q  378 actatt 383  Q
    | ||||    
T  9741260 agtatt 9741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 15668000 - 15667868
Alignment:
Q  2 attgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagac 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||| |||| |||  |||| || |||    
T  15668000 attgaaccacacatccttgatcttgttggtaacaattctttctcatgggtttataagattattttacttgcttattgatagggcttgataactagtggac 15667901  T
Q  102 ttacaacttttgttgatgttggttatagctttg 134  Q
    || |||||||||||||||||||| |||| ||||    
T  15667900 ttccaacttttgttgatgttggtaataggtttg 15667868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 594 - 771
Target Start/End: Complemental strand, 15667420 - 15667243
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||  |||| ||||| ||||||| || |||||||||| |||||||||||| ||||||||||||| |||| ||| || |||| ||||||||    
T  15667420 gtaggtagaggtcaataatgtttttaaaatggtctccttagaattacctacgattttgtccgtaggtaaaggtgcaaaacatgccgcgacaaccatttga 15667321  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctta 771  Q
    |||||||| | ||||||||||| | |||||  | ||||||||| |||||| |||  ||||||||| |||| |||||||    
T  15667320 caatgacagatggatttagctatgaaaattttccctatagtgatggattttggtcgtcactaaaagtcaattttctta 15667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 594 - 778
Target Start/End: Complemental strand, 46986766 - 46986581
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgt-ctgtaggtaaaggtgaaaaatatgtcgtgacagccatttg 692  Q
    ||||| ||||||||  ||| ||||| ||||||| || |||||||||| ||||||||| | | |||||||||| || |||| |||  ||||||| |||||     
T  46986766 gtaggtagaggtccaaaatgtttttaaaatggtctccttagaattacctacgatttttttccgtaggtaaagatggaaaacatgcagtgacagtcattta 46986667  T
Q  693 acaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattt 778  Q
     |||||||| || ||||||||||||||||||  | |||||||||||||||| ||   ||||||||| ||||||||||| |||||||    
T  46986666 gcaatgacaaacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaattt 46986581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 594 - 791
Target Start/End: Complemental strand, 47041366 - 47041169
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||||||||| ||||||| || |||||||||| |||| |||| || ||||||||||||| |||| |||  ||||||| ||||||     
T  47041366 gtaggtagaggtccataatatttttaaaatggtctccttagaattacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtcatttgg 47041267  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    | |||||| || |||||||| || ||| ||  | |||||||||||||||| ||   ||||||||| || ||||| || ||||||| |||||| |||||    
T  47041266 ctatgacagacagatttagcgactgaagtttgccctatagtgacggattttggccgtcactaaaagtctaatttgttgtaaatttcttgtagcgatac 47041169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 389 - 521
Target Start/End: Original strand, 24989039 - 24989173
Alignment:
Q  389 gagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgatta 486  Q
    ||||||||| || || ||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||  | | ||||||||||| |||||| ||||    
T  24989039 gagtattgactactgttttgggtgaatggtataataattcatagttatggagaattattttagttaactcacttcaggaatttattcttaaaattaatta 24989138  T
Q  487 cattaatcaatttcaaatttcaatgatattgatta 521  Q
     | |||||||||| ||||| ||||||| |||||||    
T  24989139 tagtaatcaattttaaattccaatgatgttgatta 24989173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 431 - 521
Target Start/End: Original strand, 3858626 - 3858719
Alignment:
Q  431 agttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttc-aatgatattgatta 521  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||    
T  3858626 agttagggagaattattctagttaagtcactttaagaatttattctaaaaattgattatagtaatcaatttcaaattccaaatgatattgatta 3858719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 679 - 768
Target Start/End: Complemental strand, 3345185 - 3345096
Alignment:
Q  679 gtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttc 768  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| | | |||||| || |||||||||    
T  3345185 gtgacagccatttgacattgacagacggaattagctacggaaattaactctatagtgacggatttcagctgtcactacaagtcaaatttc 3345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 609 - 770
Target Start/End: Complemental strand, 53682303 - 53682142
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||||| |  |||||||||| |||| |||| ||  |||||||||||| ||||  ||  ||||||| |||||| |||||||| || |||    
T  53682303 taatgtttttaaaatggtcttcttagaattacctacggttttttccataggtaaaggtggaaaacttgcagtgacagtcatttggcaatgacaaacagat 53682204  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||||||||||  | |||||||||||||||| || | ||||||||| |||||||||||    
T  53682203 ttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaatttctt 53682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 3345499 - 3345416
Alignment:
Q  440 gaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||||||||||||||||| |  | ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3345499 gaattattctagttaagtcacttcacgaatttattttaaaaattgattatagtaatcaatttcaaatttcaatgatattgatta 3345416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 595 - 770
Target Start/End: Complemental strand, 16416006 - 16415831
Alignment:
Q  595 taggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgac 694  Q
    |||| ||| |||| |||| ||||| ||||||| || |||||||||| || |||||| |||||||| ||||||| |||| ||    |||||| |||||| |    
T  16416006 taggtagaagtccataatgtttttaaaatggtctccttagaattacctatgattttttctgtaggaaaaggtggaaaacatacactgacagtcatttggc 16415907  T
Q  695 aatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||| || |||||| ||||| |||||  | |||||||||||||||| ||   ||||||||| |||||||||||    
T  16415906 aatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttctt 16415831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 595 - 770
Target Start/End: Complemental strand, 18516980 - 18516805
Alignment:
Q  595 taggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgac 694  Q
    |||| ||| |||| |||| ||||| ||||||| || |||||||||| || |||||| |||||||| ||||||| |||| ||    |||||| |||||| |    
T  18516980 taggtagaagtccataatgtttttaaaatggtctccttagaattacctatgattttttctgtaggaaaaggtggaaaacatacactgacagtcatttggc 18516881  T
Q  695 aatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||| || |||||| ||||| |||||  | |||||||||||||||| ||   ||||||||| |||||||||||    
T  18516880 aatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttctt 18516805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 609 - 770
Target Start/End: Complemental strand, 33776725 - 33776564
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||| ||| || |||||||||| || | |||| || ||||||||||||| |||| ||   ||||||| |||||| |||||||| || |||    
T  33776725 taatgtttttaaaacggtctccttagaattacctatggttttttccgtaggtaaaggtggaaaacatacggtgacagtcatttggcaatgacagacagat 33776626  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||||||||||||||  | ||| |||||||||||| ||   ||||||||| |||||||||||    
T  33776625 ttagctacggaaattttccctacagtgacggattttggccgtcactaaaagtcaaatttctt 33776564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 602 - 770
Target Start/End: Original strand, 46279347 - 46279515
Alignment:
Q  602 aggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgaca 701  Q
    |||||| |||||||||| ||||||| || |||||||||| ||||||||| || ||||||||||||| |||| |||   | | | | ||||| |||||| |    
T  46279347 aggtccataatatttttaaaatggtctccttagaattacctacgattttttccgtaggtaaaggtggaaaacatgcaataataactatttggcaatgaaa 46279446  T
Q  702 tacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
     |||||||||||||| ||||||  | ||||||||||| |||| ||   | ||||||| |||||||||||    
T  46279447 gacggatttagctacagaaatttgccctatagtgacgaattttggccgtaactaaaagtcaaatttctt 46279515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 417 - 517
Target Start/End: Complemental strand, 9741240 - 9741138
Alignment:
Q  417 gtataatagttcatagttatggagaattattctagttaagt--cattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgata 514  Q
    |||||||||||||||||||  ||||||||||||||||||||  | |||| ||||||||||||||||| |||| |  |||| |||||||||| |||| |||    
T  9741240 gtataatagttcatagttagtgagaattattctagttaagttactttaaaaatttattctaaaaattaattatagcaatctatttcaaattccaataata 9741141  T
Q  515 ttg 517  Q
    |||    
T  9741140 ttg 9741138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 594 - 677
Target Start/End: Complemental strand, 51261405 - 51261322
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgt 677  Q
    ||||| ||||| ||||||| ||||| ||||| ||||||||||||||| |||| ||||||  |||||||||||||||||||||||    
T  51261405 gtaggtagagggccttaatgtttttaaaatgatatctttagaattacctacggttttgtgcgtaggtaaaggtgaaaaatatgt 51261322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 600 - 746
Target Start/End: Complemental strand, 22526963 - 22526813
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    ||||||| ||||||||||| ||||| |||||||| |||||| ||| ||||||| |||| ||||||||| |||| |||  |||||| ||||||  ||||||    
T  22526963 agaggtcattaatatttttaaaatgatatctttataattacctacaattttgtttgtaagtaaaggtggaaaacatgcagtgacaaccattttccaatga 22526864  T
Q  700 catacgg----atttagctacggaaattaactctatagtgacggatttcgg 746  Q
    || || |    ||| | ||||  |||||||| |||||||||||||||||||    
T  22526863 cagacaggaacattgatctacaaaaattaaccctatagtgacggatttcgg 22526813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 3858758 - 3858806
Alignment:
Q  527 aattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3858758 aattttatgaattattcatttttagaatttatagtagaatagaaaatat 3858806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 55194535 - 55194483
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  55194535 tggtaattttatgaattattcatttttaaaatttatagtagaatagaaaatat 55194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 24988960 - 24989026
Alignment:
Q  280 tttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtat 349  Q
    ||||| ||||||||||||||| ||||||||||||   ||||||||||||||||||||||||| |||||||    
T  24988960 tttgtctaataagctattatgtatagtgattcaa---ttgttaccataaattaaatgagcaaaggagtat 24989026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 594 - 723
Target Start/End: Complemental strand, 20844652 - 20844523
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||  ||||| ||||||| || |||||||||| |||| |||| ||  |||||||||||| |||| |||   |||||| |||||||    
T  20844652 gtaggaagaggtccataaattttttaaaatggtctccttagaattacctacggttttttccataggtaaaggtggaaaacatgcaatgacagtcatttga 20844553  T
Q  694 caatgacatacggatttagctacggaaatt 723  Q
    |||||||| ||  ||||| |||||||||||    
T  20844552 caatgacagacaaatttaactacggaaatt 20844523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 637 - 770
Target Start/End: Complemental strand, 30381967 - 30381834
Alignment:
Q  637 ttacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtga 736  Q
    |||| |||| |||| || ||| ||||||||| ||||  ||| ||||||  |||||  |||||||| || |||||| ||||||||||| || |||||||||    
T  30381967 ttacctacggttttttccgtatgtaaaggtggaaaacttgtagtgacaatcatttagcaatgacagacagatttaactacggaaatttaccctatagtga 30381868  T
Q  737 cggatttcggttatcactaaaattcaaatttctt 770  Q
    || |||| || | ||||||||| |||||||||||    
T  30381867 cgaattttggctgtcactaaaagtcaaatttctt 30381834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 15667517 - 15667465
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  15667517 tggtaattttatgcattattcattttttgaatttatagtagaatagaaaatat 15667465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 24989208 - 24989260
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  24989208 tggtaattttatgaattatttatttttagaatttattgtagaatagaaaatat 24989260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 594 - 749
Target Start/End: Complemental strand, 55194437 - 55194283
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| ||| |||| |||||||||| ||||||| || ||| | |||| || | ||||||| ||||||||| ||| |||| |||| ||| || ||||||||    
T  55194437 gtaggtagaagtccataatatttttaaaatggtctccttatagttacctatg-ttttgtccgtaggtaaaagtggaaaacatgtggtggcaaccatttga 55194339  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggtta 749  Q
    |||||||| ||| |||||||| | ||||||  || |||| ||| |||||| |||||    
T  55194338 caatgacagacgaatttagctgcagaaatttgctttataatgatggattttggtta 55194283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 9741480 - 9741427
Alignment:
Q  135 gtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttatta 189  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  9741480 gtgcacccgctattgttgaagatccacaaatta-aagttaaaatctgatttatta 9741427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 9741099 - 9741047
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||  |||||||||||||||| |||| ||||||||||    
T  9741099 tggtaattttatgaattatatatttttagaatttataatagaatagaaaatat 9741047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 47472889 - 47472837
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||| ||| ||||||||||||||||||||||||||||| || |||||||    
T  47472889 tggtaattctattaattattcatttttagaatttatagtagaataaaaaatat 47472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 571
Target Start/End: Complemental strand, 51261495 - 51261447
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaa 571  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  51261495 tggtaattttatgaattattcacttttagaatttataatagaatagaaa 51261447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 533 - 575
Target Start/End: Complemental strand, 3345352 - 3345310
Alignment:
Q  533 atgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  3345352 atgaattattcatttttaaaatttatagtagaatagaaaatat 3345310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 609 - 755
Target Start/End: Complemental strand, 47472772 - 47472624
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacgg-- 706  Q
    |||| ||||| |||||||||| |||||||||| |||| ||| ||| ||||||||||||  |||| |||  |||  ||||||||| |||||| | ||||      
T  47472772 taatgtttttaaaatggtatccttagaattacctacggtttagtccgtaggtaaaggtagaaaacatggagtg--agccatttgtcaatgatagacgggc 47472675  T
Q  707 --atttagctacggaaattaactctatagtgacggatttcggttatcacta 755  Q
      ||||||||||  |||||||  ||||||| || |||||||||| ||||||    
T  47472674 acatttagctacaaaaattaatcctatagtaacagatttcggttgtcacta 47472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 791
Target Start/End: Complemental strand, 16312103 - 16312040
Alignment:
Q  728 ctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||| ||||||||| |||  ||||||||| ||||||||||| ||||||| |||||| |||||    
T  16312103 ctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatac 16312040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 791
Target Start/End: Complemental strand, 18488887 - 18488824
Alignment:
Q  728 ctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||| ||||||||| |||  ||||||||| ||||||||||| ||||||| |||||| |||||    
T  18488887 ctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatac 18488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 791
Target Start/End: Complemental strand, 18493097 - 18493034
Alignment:
Q  728 ctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||| ||||||||| |||  ||||||||| ||||||||||| ||||||| |||||| |||||    
T  18493097 ctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatac 18493034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 770
Target Start/End: Original strand, 24130695 - 24130832
Alignment:
Q  633 agaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctata 732  Q
    |||||||| |||| ||||||| ||||||||||||| |||| |||   ||||| ||||||| ||| |||| ||  ||||| ||||| |||||  | || ||    
T  24130695 agaattacctacggttttgtccgtaggtaaaggtggaaaacatgcaatgacaaccatttgtcaaagacagacaaatttatctacgaaaattttccctgta 24130794  T
Q  733 gtgacggatttcggttatcactaaaattcaaatttctt 770  Q
     | ||||| || || | ||||||||| |||||||||||    
T  24130795 ttaacggaatttggctgtcactaaaagtcaaatttctt 24130832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 154; Significance: 3e-81; HSPs: 3)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 17768 - 17404
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| | |  |||||||||||||||||||||||||||||||| | |||  ||||||| ||    
T  17768 cattgaaccacacatcgttgatcttgttgataacaattatttctaatgagcttataagattattttactagcttattgacagagattgataactggtgga 17669  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||| ||||||||||||  | |||||||||||||| |||||||||| ||||||| ||||||||| | ||||||||    
T  17668 cttccaacttttgttgatgttggtaatagttttggtgcacccacttttgttgaagatccacaaattagaagctaaaatcggatttattacgccatgttgt 17569  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            ||||||||||| |            |||||||||||||||||| ||||||||||||| ||||||||||||| |    
T  17568 agaagtgattgtaag---tttttttaggtatgaagtgagt------------gtaagttgtaacttgatattatgtcattttgtctaataagctattagg 17484  T
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatt 383  Q
    |  |||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  17483 a--agtgattcaaattttgttaccataaatt-aacgagcaatggagtatatataaattttgatttttgtgagtgttgagtatt 17404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 575
Target Start/End: Complemental strand, 17249 - 17198
Alignment:
Q  524 ggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  17249 ggtaattttatgaattattcatttttaaaatttatagtagaatagaaaatat 17198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 426 - 521
Target Start/End: Complemental strand, 17381 - 17285
Alignment:
Q  426 ttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||| ||||| | ||||| ||||||||||||||| |  |||||||||||||||| |||||||| | ||||||||||||||| | ||||||||||||||    
T  17381 ttcaaagttaggcagaataattctagttaagtcacttcaagaatttattctaaacattgattatagtaatcaatttcaaatct-aatgatattgatta 17285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 31944644 - 31944329
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||  ||||||| ||    
T  31944644 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacgagcttataagattattttactagcttattggcagggcttgataactggtgga 31944545  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| ||||||||||| |||||||| ||||||||  |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||    
T  31944544 cttccaacttttgttaatgttggtaatagctttcatgcacccgctattgttgaagatccacaaattagaagttaaaatctgatttattatgcca--ttgt 31944447  T
Q  201 agaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatg 300  Q
    |||| ||||||||||            |||||||||||||            |||||||||||||||||| | ||||| ||||| |||||||||||||||    
T  31944446 agaagtgattgtaag---tttttttaggtatgaagtgatt------------gtaagttgtaacttgatattctgtca-tttgtctaataagctattatg 31944363  T
Q  301 aatagtgattcaaattttgttaccataaattaaa 334  Q
    |||||||||||||||| |||||||||||||||||    
T  31944362 aatagtgattcaaattctgttaccataaattaaa 31944329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 320 - 521
Target Start/End: Complemental strand, 31943955 - 31943754
Alignment:
Q  320 ttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggta 419  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||||  |||||| |||||||||||    
T  31943955 ttaccctaaattaaatgagcaatggagtatatatagattttgatttatgtgagtattgagtatttttgtgagtattgagt--tggtttgggtgaatggta 31943858  T
Q  420 taatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattg 517  Q
    |||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  31943857 taatagttcatagttatggaaaattattctagttaagtcacttcaagaatttattctaaaaattgattatagtaatcaatttcaaattttaatgatattg 31943758  T
Q  518 atta 521  Q
    ||||    
T  31943757 atta 31943754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 245 - 521
Target Start/End: Original strand, 29528246 - 29528521
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||     
T  29528246 aagtgattgtaagttgtaacttgatagtatgtcattttgtctaataaatcattatgaatagtgattcaaattttgttaccataaattaaatgagcaatga 29528345  T
Q  345 agtatatatagattttgatttctgt-gagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaat 443  Q
    ||||||||||||||||||||||| | |||||| || ||||||| |||||| | |||| || ||| |||||||||||||||||||||||||||  ||||||    
T  29528346 agtatatatagattttgatttctatggagtatagagtatttctgtgagtaat-agtattgatttgggtgaatggtataatagttcatagttagagagaat 29528444  T
Q  444 tattctagttaag--tcattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||  ||||||   | | ||||||||| |||  |||||||||| | |||||||||||||||| |||||||||| ||||    
T  29528445 tattc--gttaagacgcttcaagaatttaatct-taaattgattatagtaatcaatttcaaattccaatgatattaatta 29528521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 245 - 505
Target Start/End: Complemental strand, 17359255 - 17359012
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  17359255 aagtgattgtaagctgtaacttgatattatgtcattttgtctaataagctattatgaatagtgattcaaattttattaccataacttaaatgagcaatgg 17359156  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    |||||||||| ||||  |||| ||||||||                   ||||||| ||||||  |||||||||||||||||||| ||||||||||||||    
T  17359155 agtatatataaatttcaatttatgtgagta-------------------ttgagtattggtttgagtgaatggtataatagttcaaagttatggagaatt 17359075  T
Q  445 attctagttaagt--cattaagaatttattctaaaaattgattacattaatcaatttcaaatt 505  Q
    |||||| ||||||  | | || |||||||||||||||||||||| | ||||||||||||||||    
T  17359074 attctacttaagtcgcttcaaaaatttattctaaaaattgattatagtaatcaatttcaaatt 17359012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 94 - 377
Target Start/End: Original strand, 24104671 - 24104939
Alignment:
Q  94 tggtagacttacaacttttgttgatgttggttatagctttggtgcaccc-gatattgttgaagatccataaattagaagttaaaatctgatttattatgt 192  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||| | ||| |||| | ||||| ||||||||||||||||||||||||||||||     
T  24104671 tggtggactttcaacttttgttgatgttggtgatagctttggtgcaccctgctatcgttgcatatccacaaattagaagttaaaatctgatttattatgc 24104770  T
Q  193 catgttgtagaaatgattgtaagannnnnnnnnnngtatgaagtgattgtaaaagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataag 292  Q
    |||||||||||||| ||||||||            |||||||||||| || ||            ||||||||||||| | ||||||||||| |||||||    
T  24104771 catgttgtagaaataattgtaag---tttttttaggtatgaagtgatcgtgaa------------ttgtaacttgatatt-tgtcattttgtctaataag 24104854  T
Q  293 ctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattg 377  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||| |||||||||||    
T  24104855 ctaatatgaatagtgattcaaattttgttaccataaattaaatgagcaatgaagtatacataaattttaatttttgtgagtattg 24104939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 245 - 521
Target Start/End: Complemental strand, 4325385 - 4325133
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||     ||||||||||||||| |||||||||||||||| |||||||||    
T  4325385 aagtgatcgtaagttgtaacttaatattatgtcattttgtctaataagctatt-----tagtgattcaaatttggttaccataaattaaa-gagcaatgg 4325292  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    |||||||||| |||||||||||||||||||                   ||||||| |||||| | ||||||||||||||||| ||||||| ||| ||||    
T  4325291 agtatatataaattttgatttctgtgagta-------------------ttgagtattggtttggatgaatggtataatagtttatagttagggaaaatt 4325211  T
Q  445 attctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||||||||||||  | ||||||||||||| | ||||||||| | ||||||||||| |||| |||||||||||||||    
T  4325210 attctagttaagtcacttcaagaatttattct-ataattgattatagtaatcaatttctaattccaatgatattgatta 4325133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 373 - 575
Target Start/End: Complemental strand, 3074404 - 3074189
Alignment:
Q  373 tattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaattta 470  Q
    |||||| ||||| | |||||||| |||| |||||| | | ||||||||||||||||||||||| ||||||||||| |||||||||||  | || ||||||    
T  3074404 tattgagtatttatgtgagtatttagtattggtttggataaatggtataatagttcatagttagggagaattattatagttaagtcacttcaacaattta 3074305  T
Q  471 ttctaaaaattgattacattaatcaatttcaaatttcaatgatattgattaa-----------tggtaattttatgaattattcatttttagaatttata 559  Q
    || ||||||||||||  | ||||| |||| ||||| ||||||||||||||||           | ||||||||||||||||||||| |||||||||||||    
T  3074304 ttttaaaaattgattgtaataatcgattttaaattccaatgatattgattaaattaattttagttgtaattttatgaattattcatctttagaatttata 3074205  T
Q  560 gtagattagaaaatat 575  Q
    ||||| ||||||||||    
T  3074204 gtagaatagaaaatat 3074189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 395 - 521
Target Start/End: Original strand, 24104931 - 24105059
Alignment:
Q  395 tgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaa 492  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  | || |||||||||||||||||||||| | |||    
T  24104931 tgagtattggtttgggtgaatggtataatagttcatagttaaggagaattattctagttaagtcaattcaaaaatttattctaaaaattgattatagtaa 24105030  T
Q  493 tcaatttcaaatttcaatgatattgatta 521  Q
    ||||||||||||| ||||| |||| ||||    
T  24105031 tcaatttcaaattccaatggtatttatta 24105059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 389 - 521
Target Start/End: Original strand, 53693280 - 53693414
Alignment:
Q  389 gagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgatta 486  Q
    |||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||||  || ||||||||||||||||||||||    
T  53693280 gagtattgagtattggtttgggggaatggtataatagttcatagttagggagaattattctagttaaatcatttcaacaatttattctaaaaattgatta 53693379  T
Q  487 cattaatcaatttcaaatttcaatgatattgatta 521  Q
     | || || ||||||||||  ||||||||||||||    
T  53693380 tagtactcgatttcaaattctaatgatattgatta 53693414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 594 - 770
Target Start/End: Original strand, 56039748 - 56039923
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| || |||| ||||||||||| |||| ||||| |||||||||| |||| |||||||  ||||||||| || |||| ||   |||||| ||||||||    
T  56039748 gtaggtagcggtctttaatatttttaaaattgtatccttagaattacctacggttttgtccataggtaaagatgtaaaacatagagtgacaaccatttga 56039847  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    || ||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||| || || | |||||||||    
T  56039848 ca-tgacaaacggatttagctacggaaattaaccctataatgacggatttcggctatcattacaaataaaatttctt 56039923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 346 - 521
Target Start/End: Original strand, 56039449 - 56039617
Alignment:
Q  346 gtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatta 445  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||| |||||  |||||| |||||||  |||||||||| || |||| |||||||||    
T  56039449 gtatatatagattttgatttatgtaagtattgagtatttctatgagtaatgagtgttggtttgggtgaatcatataatagtttattgtta-ggagaatta 56039547  T
Q  446 ttctagttaagtcattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
       |||| |   | | ||| |||||||||||||||| |||| | |||| |||||||||||||||||||||||||||    
T  56039548 ---tagtca---cttcaaggatttattctaaaaatttattatagtaataaatttcaaatttcaatgatattgatta 56039617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 419 - 521
Target Start/End: Complemental strand, 9578574 - 9578475
Alignment:
Q  419 ataatagttcatagttatggagaattattctagttaagtcattaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattga 518  Q
    |||||||||||||||||  |||||||||||||||| | |||   |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||    
T  9578574 ataatagttcatagttagagagaattattctagtttattca---agaatttattctaacaattgattatagtaatcaatttcaaatttcaatgatattga 9578478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 614 - 770
Target Start/End: Complemental strand, 47300004 - 47299848
Alignment:
Q  614 ttttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||| ||||||| ||||||||||||| || |||||| || ||||||||||||| ||||||||| ||||||| |||||| |||| ||| || ||||||||    
T  47300004 tttttaaaatggtctctttagaattacctaggattttttccgtaggtaaaggtggaaaatatgtagtgacagtcatttggcaataacagacagatttagc 47299905  T
Q  714 tacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    |||| |||||  | ||||||||| |||||| | |  ||| ||||| |||||||||||    
T  47299904 tacgaaaatttgccctatagtgatggattttgctcgtcattaaaagtcaaatttctt 47299848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 594 - 791
Target Start/End: Original strand, 10985177 - 10985374
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| |||||||| |||| ||| | ||||| | ||  |||||||||||| | ||||||  ||||||||| ||| |||| |||   ||||| ||||||||    
T  10985177 gtaggtagaggtccataatgtttataaaatgctctccgtagaattacttatggttttgttcgtaggtaaaagtggaaaacatgcactgacaaccatttga 10985276  T
Q  694 caatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
     ||||||||||  |||||  ||||||||||  | |||||| ||||||||| || ||||||||||| ||||||||||| ||||||| ||| ||||||||    
T  10985277 gaatgacatacatatttaattacggaaattttccctatagcgacggattttggctatcactaaaagtcaaatttcttgtaaatttgttgcagtgatac 10985374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 10984957 - 10985042
Alignment:
Q  437 ggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatt 520  Q
    ||||||||||||||||||||||| |  ||||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  10984957 ggagaattattctagttaagtcacttcaagaattcattctaaaaattgattatagtaatcaatttcaaattccaatgatattgatt 10985042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 9579627 - 9579535
Alignment:
Q  334 atgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagt 426  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| |||||   |||| |||| ||| || | ||||||||||||||||||||    
T  9579627 atgagcaatggagtatatatagattttgatttatgtaagtattgagtattttggtgagcattgggtattgatgtaggtgaatggtataatagt 9579535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 334 - 426
Target Start/End: Complemental strand, 9585322 - 9585230
Alignment:
Q  334 atgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagt 426  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| |||||   |||| |||| ||| || | ||||||||||||||||||||    
T  9585322 atgagcaatggagtatatatagattttgatttatgtaagtattgagtattttggtgagcattgggtattgatgtaggtgaatggtataatagt 9585230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 770
Target Start/End: Complemental strand, 21403022 - 21402908
Alignment:
Q  656 taggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcacta 755  Q
    |||||||||||| |||| |||  ||||||||||||||||||||||| |||||||||||||   |||||    |||||||||||||||| ||   ||||||    
T  21403022 taggtaaaggtggaaaacatgcggtgacagccatttgacaatgacagacggatttagctataaaaatttgtcctatagtgacggattttggccgtcacta 21402923  T
Q  756 aaattcaaatttctt 770  Q
    ||| |||||||||||    
T  21402922 aaagtcaaatttctt 21402908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 620 - 770
Target Start/End: Original strand, 24105203 - 24105352
Alignment:
Q  620 aaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacgga 719  Q
    ||||||| || |||||||||| || | ||| ||| ||||||||| ||| |||| |||| |||||| | ||||| |||||| | |||||||||||||||||    
T  24105203 aaatggtctccttagaattacatatg-tttcgtccgtaggtaaaagtggaaaacatgtagtgacaacaatttggcaatgagagacggatttagctacgga 24105301  T
Q  720 aattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||  | ||||||||||| || |||| | |||||| || |||||||||||    
T  24105302 aatttgccctatagtgacgtatatcggctgtcactacaaatcaaatttctt 24105352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 4325098 - 4325046
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  4325098 tggtaattttatgaattatttatttttagaatttatagtagaatagaaaatat 4325046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 614 - 770
Target Start/End: Complemental strand, 9578330 - 9578175
Alignment:
Q  614 ttttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||| ||||||| ||||||| ||||| || | ||||||| |||||||||| || |||| |||   ||||| |||||||| ||||||| |  ||||||||    
T  9578330 tttttaaaatggtctctttagcattacctatg-ttttgtccgtaggtaaagctggaaaacatgcaatgacaaccatttgagaatgacaaatagatttagc 9578232  T
Q  714 tacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||||||  ||||||| |||||||||| |  | |||||| || |||||||||||    
T  9578231 tacggaaatttgctctataatgacggattttgactgtcactataagtcaaatttctt 9578175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 24105081 - 24105133
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  24105081 tggtaattttatgaattattcatttttagaatttatagtagaatataaaatat 24105133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 31943719 - 31943667
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31943719 tggtaattttatgaattattcatttttagaatttatagtagaattgaaaatat 31943667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 595 - 770
Target Start/End: Complemental strand, 31943623 - 31943450
Alignment:
Q  595 taggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgac 694  Q
    |||| |||||||| |||| ||||| ||||||| |  |||||| |||||||| ||||||| ||||||||||| | |||| |||  ||||||| |||||| |    
T  31943623 taggtagaggtccataatgtttttaaaatggtcttcttagaaatacttacg-ttttgtccgtaggtaaaggaggaaaacatgg-gtgacagtcatttggc 31943526  T
Q  695 aatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||||||  ||||||||||| |||||     ||||||||||||| | || | |||||| || |||||||||||    
T  31943525 aatgacatacaaatttagctacgaaaatttgtcttatagtgacggatattggctgtcactacaagtcaaatttctt 31943450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 655 - 717
Target Start/End: Complemental strand, 54085677 - 54085615
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacg 717  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||||| ||||    
T  54085677 gtaggtaaaggtggaaaacatgttgtgacagccatttgacaatgacagacggatttagttacg 54085615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 791
Target Start/End: Original strand, 45586519 - 45586707
Alignment:
Q  600 agaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatga 699  Q
    |||||||| |||| ||||| ||||||| || ||| || ||| |||| |||| || ||||||||||||| |||| |||  ||||||| ||| |   |||||    
T  45586519 agaggtccataatgtttttaaaatggtctccttataagtacctacggttttttccgtaggtaaaggtggaaaacatgcagtgacagtcatct---aatga 45586615  T
Q  700 catacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    || ||  |||||||||| ||||||  | |||||||||| ||||| || | ||||||||| ||||||||||| || |||| | |||| |||||    
T  45586616 cagacatatttagctacagaaatttgccctatagtgacagattttggctgtcactaaaaatcaaatttcttgtagatttctcgtagcgatac 45586707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 51379571 - 51379514
Alignment:
Q  99 gacttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaaga 156  Q
    ||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||    
T  51379571 gacttccaacttttgttgatgttggtaatagctttggtgcacctgctattgttgaaga 51379514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 3650808 - 3650672
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||||||||| ||  |||| ||| ||||||||||  |||||    ||||| |||||||||| ||   ||||     
T  3650808 gtaggtaaaggtggaaaacatgtcgtgacagccatttggcatcgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcaca 3650709  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || |||| || |||||| |||||    
T  3650708 aaaattcaaatttgttgtaaacttcttgtagcgatac 3650672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 9578440 - 9578388
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  9578440 tggtaattttatgaattattcatttttaaaatttatagtagaaaagaaaatat 9578388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 17359322 - 17359270
Alignment:
Q  163 aattagaagttaaaatctgatttattatgtcatgttgtagaaatgattgtaag 215  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  17359322 aattagaagttaaaatctgatttattatgccctgttgtagaagtgattgtaag 17359270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 29528556 - 29528604
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaa 571  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  29528556 tggtaattttatgaattattcatttctagaatttatagtagaatagaaa 29528604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4325440 - 4325387
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttat 55  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  4325440 cattgaaccacacatcgttgatcttgttggtaac-attctttcttacgggcttat 4325387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 713
Target Start/End: Original strand, 24974606 - 24974664
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | |||||||||    
T  24974606 gtaggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagc 24974664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 525 - 574
Target Start/End: Original strand, 10985080 - 10985129
Alignment:
Q  525 gtaattttatgaattattcatttttagaatttatagtagattagaaaata 574  Q
    ||||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  10985080 gtaattttatgaattattcttttttataatttatagtagaatagaaaata 10985129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 784
Target Start/End: Original strand, 50632961 - 50633090
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||| ||||| || ||||| ||| ||||||||||  |||||    ||||| |||||||||| ||   ||||     
T  50632961 gtaggtaaaggtggaaaacatgtcgtgacagctatttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcaca 50633060  T
Q  755 aaaattcaaatttcttataaattttttgta 784  Q
    ||||||||||||| || |||| || |||||    
T  50633061 aaaattcaaatttgttgtaaacttcttgta 50633090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 56039651 - 56039703
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||| ||||||||||||||| |||||||||| || ||||||||||    
T  56039651 tggtaattttataaattattcatttttaaaatttatagtcgaatagaaaatat 56039703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 53693449 - 53693500
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaata 574  Q
    ||||||||||||||||||||||  |||| ||||||||||||| |||||||||    
T  53693449 tggtaattttatgaattattcaactttaaaatttatagtagaatagaaaata 53693500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 716
Target Start/End: Complemental strand, 12827247 - 12827186
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctac 716  Q
    ||||||||||||| |||| ||||||||||| |||||||||| | ||| | ||||||||||||    
T  12827247 gtaggtaaaggtggaaaacatgtcgtgacaaccatttgacactaacagatggatttagctac 12827186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 770
Target Start/End: Original strand, 29528738 - 29528803
Alignment:
Q  705 ggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||| |||||||||||||||| ||||||| || |||||||||  |||||| || |||||||||||    
T  29528738 ggattcagctacggaaattaaccctatagtaacagatttcggtggtcactacaaatcaaatttctt 29528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 791
Target Start/End: Original strand, 53693631 - 53693744
Alignment:
Q  679 gtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacgga-tttcggttatcactaaaattcaaatttcttataaatt 777  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||    |||||||||| || ||| |||| |||||| || |||||||||||  |||||    
T  53693631 gtgacagccatttaaaaatgacagacagatttagctacggaaatttgtcctatagtgacagatttttggttgtcactataagtcaaatttcttgcaaatt 53693730  T
Q  778 ttttgtagtgatac 791  Q
      |||||| |||||    
T  53693731 gcttgtagcgatac 53693744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 24104597 - 24104659
Alignment:
Q  50 acttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 112  Q
    |||||||||||| |||||||||||||||| ||| | |||  ||||||| ||||| ||||||||    
T  24104597 acttataagattcttttactagcttattggcagagcttgataactggtggacttccaactttt 24104659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 31812613 - 31812571
Alignment:
Q  463 agaatttattctaaaaattgattacattaatcaatttcaaatt 505  Q
    |||||||||||||||||||||||| | ||| ||||||||||||    
T  31812613 agaatttattctaaaaattgattataataaccaatttcaaatt 31812571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 723
Target Start/End: Complemental strand, 4324967 - 4324875
Alignment:
Q  631 ttagaattacttacgattttgtctgtaggtaaaggtg-aaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaatt 723  Q
    |||||||||| |||| ||||| | ||||||||| ||| |||||||||   ||||| ||||||||| |||||| | | |||||||||||||||||    
T  4324967 ttagaattacatacg-ttttgcccgtaggtaaaagtggaaaaatatgcaatgacaaccatttgacgatgacagatgaatttagctacggaaatt 4324875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 7e-70; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43728024 - 43727810
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| |  |||  |||||||  |    
T  43728024 cattgaaccacacatcgttgatcatgttggtaacaattctttctcataggcttataagattattttactagcttattgacatgagttgataactggtgta 43727925  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
    ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||| | ||||||    
T  43727924 cttccaacttttgttgatgttggtaatagctttggtgcacccgctattgttgaagatccacgaattagaagttaaagtctgatttattatgccttgttgt 43727825  T
Q  201 agaaatgattgtaag 215  Q
    |||| ||||||||||    
T  43727824 agaagtgattgtaag 43727810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9230429 - 9230215
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    ||||||||||||||||||||| | |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| || |||  ||||| |  |    
T  9230429 cattgaaccacacatcgttgaccatgttggtaacaattttttctaacgggcttataagattattttactagcttattgacatggcttgataactgatgta 9230330  T
Q  101 cttacaacttttgttgatgttggttatagctttggtgcacccgatattgttgaagatccataaattagaagttaaaatctgatttattatgtcatgttgt 200  Q
     || |||||||||||||||||| | |||||||||||||||||| |||||||||| ||| | |||| ||| |||||||||||||| |||||||||||||||    
T  9230329 tttccaacttttgttgatgttgataatagctttggtgcacccgctattgttgaatatcgacaaataagatgttaaaatctgattaattatgtcatgttgt 9230230  T
Q  201 agaaatgattgtaag 215  Q
    |||| ||||||||||    
T  9230229 agaagtgattgtaag 9230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 245 - 478
Target Start/End: Complemental strand, 25024210 - 25023994
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  25024210 aagtgattgtaatttgtaacttgatagtatgtcattttgtctgataagctattatgaatagtaaatcaaattttgttaccataaattaaatgagcaatgg 25024111  T
Q  345 agtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    ||||||||||||||||||||| ||||||||                   ||||||| |||||| ||||||||||||||||||| ||||||| ||||||||    
T  25024110 agtatatatagattttgatttatgtgagta-------------------ttgagtattggtttgggtgaatggtataatagtttatagttagggagaatt 25024030  T
Q  445 attctagttaagtca--ttaagaatttattctaaaa 478  Q
    |||||||||||| ||  | |||||||||||||||||    
T  25024029 attctagttaagccacttcaagaatttattctaaaa 25023994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 362 - 521
Target Start/End: Original strand, 26786695 - 26786856
Alignment:
Q  362 atttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca-- 459  Q
    |||| ||||| |||||| ||||| | |||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26786695 atttttgtgaatattgagtatttttgtgagtattgaatattggtttgggtgaatggtataatagttcatagttatggagaattattctagttaagtcact 26786794  T
Q  460 ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    | || |||||||||||||||||||||| | ||||| |||||||||| |||||||||| ||||    
T  26786795 tcaacaatttattctaaaaattgattatagtaatcgatttcaaattccaatgatattaatta 26786856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 301 - 456
Target Start/End: Original strand, 28041559 - 28041714
Alignment:
Q  301 aatagtgattcaaattttgttaccataaattaaatgagcaatggagtatatatagattttgatttctgtgagtattgactatttctatgagtattgagta 400  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||  ||||||||||||    
T  28041559 aatagtgattcaaattatgttaccataaattaaatgagcaatgaagtatatatacattttgatttatgtgagtattgagtatttctgcgagtattgagta 28041658  T
Q  401 atggtttaggtgaatggtataatagttcatagttatggagaattattctagttaag 456  Q
     |  ||| | ||||||| || |||| |||||||||  |||||||||||||||||||    
T  28041659 tttatttggatgaatggcatgataggtcatagttagagagaattattctagttaag 28041714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 245 - 370
Target Start/End: Complemental strand, 5287369 - 5287244
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatgg 344  Q
    ||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  5287369 aagtgattgtaagttgtaacttgatagtatgtcattttgtccgataagctattatgaacactgattcaaattttgtcaccataaattaaatgagcaatgg 5287270  T
Q  345 agtatatatagattttgatttctgtg 370  Q
    || |||| ||||||||||||| ||||    
T  5287269 agaatatgtagattttgatttatgtg 5287244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 350 - 521
Target Start/End: Complemental strand, 9230189 - 9230011
Alignment:
Q  350 atatagattttgatttctgtgagtattgactatttctatgagtattgagt-----aatggtttaggtgaatggtataatagttcatagttatggagaatt 444  Q
    |||||||||||||||| |||||||||||| ||||| | ||||||||||||     | ||||||  |||||||||||||||||||||||||| ||||||||    
T  9230189 atatagattttgatttatgtgagtattgagtatttttgtgagtattgagttgagtattggtttgagtgaatggtataatagttcatagttagggagaatt 9230090  T
Q  445 attctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatattgatta 521  Q
    |||||||||||||||  | || ||||||||||||||||||| || | ||||| |||||||||| |||||||||| ||||    
T  9230089 attctagttaagtcacttcaacaatttattctaaaaattgagtatagtaatcgatttcaaattccaatgatattaatta 9230011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 609 - 791
Target Start/End: Original strand, 24276773 - 24276955
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||||| || ||||| |||| |||| ||||||||||| |||||| ||||||| || | |||| |||||||||||||||||| | ||||    
T  24276773 taatgtttttaaaatggtctccttagagttacctacggttttgtctgtaagtaaagatgaaaaacatttagtgatagccatttgacaatgacagatggat 24276872  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    || ||||||||||||  | ||||||||| |||||| || |||||||||||||||| ||| || ||||||| ||||||||||||    
T  24276873 ttcgctacggaaattttccctatagtgaaggattttggctatcactaaaattcaatttttttgtaaatttcttgtagtgatac 24276955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 5288070 - 5287940
Alignment:
Q  27 ttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaacttttgttgatgttggtta 126  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||  ||| ||| ||||| ||||||||||||||| |||| |    
T  5288070 ttggtaacacttctttctcacgagcttgtaagattattttactagcttattgacaggatttgacaaccggtggacttccaacttttgttgatgatggtaa 5287971  T
Q  127 tagctttggtgcacccgatattgttgaagat 157  Q
    |||||||||| |||||| |||| ||||||||    
T  5287970 tagctttggtacacccgctatttttgaagat 5287940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 594 - 770
Target Start/End: Complemental strand, 6113402 - 6113228
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagc-catttg 692  Q
    ||||| |||||||| |||||||||| |||| |  || |||||||||| |||| ||||||||||||||||||||| |||| |||  |||||| | ||||||    
T  6113402 gtaggtagaggtccataatatttttaaaatagactccttagaattacctacg-ttttgtctgtaggtaaaggtggaaaacatgcagtgacaacacatttg 6113304  T
Q  693 acaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
     |  ||||||||||||||||||||||||||| || |||||||||||||||| || |||||||| || |||||||||||    
T  6113303 gc--tgacatacggatttagctacggaaatttaccctatagtgacggattttggctatcactacaagtcaaatttctt 6113228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 388 - 519
Target Start/End: Complemental strand, 43727703 - 43727570
Alignment:
Q  388 tgagtattgagtaatggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgatt 485  Q
    ||||||||||||  || | | ||||||||||||||||||||||||||| |||||||||||||||||||||||  | || |||||||||||||||||||||    
T  43727703 tgagtattgagttttgatctgggtgaatggtataatagttcatagttagggagaattattctagttaagtcacttcaacaatttattctaaaaattgatt 43727604  T
Q  486 acattaatcaatttcaaatttcaatgatattgat 519  Q
    | | ||||| |||| ||||| |||||||||||||    
T  43727603 atagtaatcgattttaaattccaatgatattgat 43727570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23804645 - 23804726
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacag 82  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  23804645 cattgaaccacacatcgttgatcttgttggtaaccattctttctcacaaacttataagattattttactagcttattgacag 23804726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 24276397 - 24276517
Alignment:
Q  24 ttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttgga-aactggtagacttacaacttttgttgatgttg 122  Q
    ||||||||||||||||||||| |||   ||||||||||| |||||||||||||||| || || | || ||||||| ||||| ||||||||||||||||||    
T  24276397 ttgttggtaacaattctttctaacgaggttataagattaatttactagcttattgatagagtcttgacaactggtggacttccaacttttgttgatgttg 24276496  T
Q  123 gttatagctttggtgcacccg 143  Q
    |||||||||||||||||||||    
T  24276497 gttatagctttggtgcacccg 24276517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 25024599 - 25024455
Alignment:
Q  13 catcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtagacttacaactttt 112  Q
    |||||||||| || || |||||||||| ||||| | | ||||||||||||||||||||||||||| ||| || |||  || |||| ||||| ||||||||    
T  25024599 catcgttgattttattagtaacaattccttctcgccggcttataagattattttactagcttattaacatggattgacaattggtggacttccaactttt 25024500  T
Q  113 gttgatgttggttatagctttggtgcacccgatattgttgaagat 157  Q
    ||||||| |||| |||||||||||||| ||| |||||||||||||    
T  25024499 gttgatgctggtaatagctttggtgcatccgctattgttgaagat 25024455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 402 - 521
Target Start/End: Complemental strand, 5287245 - 5287124
Alignment:
Q  402 tggtttaggtgaatggtataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaattt 499  Q
    |||||| |||||||| |||||||||| ||| |||  ||||||||||||||||||  || |  ||||| ||||||||||||||||||| | ||||||||||    
T  5287245 tggtttgggtgaatgatataatagttaataattagcgagaattattctagttaaaccacttcaagaaattattctaaaaattgattatagtaatcaattt 5287146  T
Q  500 caaatttcaatgatattgatta 521  Q
    ||||||||||||||||||||||    
T  5287145 caaatttcaatgatattgatta 5287124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 615 - 791
Target Start/End: Original strand, 28041913 - 28042089
Alignment:
Q  615 tttttaaa-tggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    |||||||| ||||||| |||||||||| |||| |||||||||| ||||||||||||||| |||   |||||||||||||||||||||| | ||||||| |    
T  28041913 tttttaaagtggtatccttagaattacctacggttttgtctgt-ggtaaaggtgaaaaacatgcattgacagccatttgacaatgacagaaggatttaac 28042011  T
Q  714 tacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    |||||  |||||||||||||||  |||||||||   || ||| || |||||||| || | ||||| ||||| ||||||    
T  28042012 tacggctattaactctatagtgttggatttcggccgtcgctacaagtcaaattttttgttaatttcttgtattgatac 28042089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 23180033 - 23180109
Alignment:
Q  2 attgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattg 78  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  23180033 attgaaacacacatcgttgatcttgttggtaacaattatttctcacgagcttataagattattttactagcttattg 23180109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 418 - 521
Target Start/End: Original strand, 24276519 - 24276624
Alignment:
Q  418 tataatagttcatagttatggagaattattctagttaagtcatt--aagaatttattctaaaaattgattacattaatcaatttcaaatttcaatgatat 515  Q
    |||| ||||| ||||||| ||| ||||||||||||||||||| |  ||||||||||||||||||||||||| | |||||||||| ||||| |||| ||||    
T  24276519 tatattagtttatagttagggataattattctagttaagtcacttcaagaatttattctaaaaattgattatagtaatcaatttaaaattccaataatat 24276618  T
Q  516 tgatta 521  Q
    ||||||    
T  24276619 tgatta 24276624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 655 - 791
Target Start/End: Original strand, 43216949 - 43217085
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||||||||| || ||||| ||||||||||||||  |||||    ||||| ||||||||||  | | ||||     
T  43216949 gtaggtaaaggtggaaaacatgtcgtgacagccatttggcactgacagacggatttagctacataaatttttcctatattgacggattttagctgtcaca 43217048  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  43217049 aaaattcaaatttgttgtaaatttcttgtagcgatac 43217085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 5287775 - 5287722
Alignment:
Q  151 tgaagatccataaattagaagttaaaatctgatttattatgtcatgttgtagaa 204  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  5287775 tgaagatccacaaattagaagttaaaatctgatttattatgtcttgttgtagaa 5287722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 609 - 770
Target Start/End: Complemental strand, 38762236 - 38762075
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggat 708  Q
    |||| ||||| ||||| | ||||||||||||| |||  |||| || ||||||||||||| ||||  ||  ||||||| ||||| ||||||||| || |||    
T  38762236 taatgtttttaaaatgatctctttagaattacctacagttttttccgtaggtaaaggtggaaaacttgcggtgacagtcatttaacaatgacagacagat 38762137  T
Q  709 ttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttctt 770  Q
    ||||||||| |||||  ||||| |||| | ||||| ||   ||||||||| |||||||||||    
T  38762136 ttagctacgaaaatttgctctacagtggctgattttggccgtcactaaaagtcaaatttctt 38762075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 6113542 - 6113490
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  6113542 tggtaattttatgaattattcatctttagaatttatagtagaatagaaaatat 6113490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 23180266 - 23180331
Alignment:
Q  245 aagtgatagtaagttgtaacttgatagtatgtcattttgtgtaataagctattatgaatagtgattca 312  Q
    ||||||| |||||||||||||||||  ||||||||||| | |||||||||||||||||||||||||||    
T  23180266 aagtgattgtaagttgtaacttgat--tatgtcattttatttaataagctattatgaatagtgattca 23180331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 25023913 - 25023861
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25023913 tggtaattttataaattattcatttttagaatttatagtagaatagaaaatat 25023861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 615 - 791
Target Start/End: Original strand, 26787010 - 26787185
Alignment:
Q  615 tttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagct 714  Q
    |||| ||||||| || |||||||||| ||| ||||| || ||| |||||  ||||||| ||||  ||||| ||||||| |||||||| ||  ||||||||    
T  26787010 ttttaaaatggtctccttagaattacctac-attttttccgtatgtaaatatgaaaaacatgtaatgacaaccatttggcaatgacagacaaatttagct 26787108  T
Q  715 acggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    | |||||||  | |||||||||||||||| || | || ||| || |||||||||||  |||||| |||||| |||||    
T  26787109 atggaaatttgccctatagtgacggattttggctgtctctataagtcaaatttcttgcaaatttcttgtagcgatac 26787185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 43727533 - 43727481
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  43727533 tggtaattttatgaattattcatctttagaatttatagtagaatagaaaatat 43727481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 631 - 778
Target Start/End: Original strand, 29953014 - 29953161
Alignment:
Q  631 ttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactcta 730  Q
    |||||||||| ||||||||| || ||||||||||||| |||| |||||||||||| |||||   |||||||  | |||||| ||| |||||||    |||    
T  29953014 ttagaattacctacgattttttccgtaggtaaaggtggaaaacatgtcgtgacagtcattttgaaatgacagccagatttaactatggaaatttgtccta 29953113  T
Q  731 tagtgacggatttcggttatcactaaaattcaaatttcttataaattt 778  Q
    |||||| |||||| |||  |||| |||| ||||||||| | |||||||    
T  29953114 tagtgatggattttggtcgtcacaaaaagtcaaatttcgtgtaaattt 29953161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 740
Target Start/End: Original strand, 31035962 - 31036090
Alignment:
Q  614 ttttttaaatggtatctttagaattacttacgattttgtct--gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggattta 711  Q
    ||||| ||||||| || |||||||||| |||| |||| | |  ||||||||||||| ||||  ||| ||||||| ||||||||||||||| ||  |||||    
T  31035962 tttttaaaatggtctccttagaattacctacggttttttttcggtaggtaaaggtggaaaacttgtagtgacagtcatttgacaatgacagacatattta 31036061  T
Q  712 gctacggaaattaactctatagtgacgga 740  Q
     |||||||||||  | |||||||||||||    
T  31036062 actacggaaattttccctatagtgacgga 31036090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 615 - 791
Target Start/End: Complemental strand, 9225920 - 9225745
Alignment:
Q  615 tttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagct 714  Q
    |||| ||||||| || ||| |||||| ||| ||||| ||  |||||||| ||| |||| |||| |||||||||||||| |||||||| |  |||||| ||    
T  9225920 ttttaaaatggtctccttaaaattacctac-attttttccataggtaaatgtggaaaacatgtagtgacagccatttggcaatgacagatagatttaact 9225822  T
Q  715 acggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||| |||||  | | | |||||||||||| || | |||||| || |||||||| ||  |||||| ||||||||||||    
T  9225821 acgaaaatttgccccaaagtgacggattttggctgtcactacaagtcaaatttgttgaaaatttcttgtagtgatac 9225745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 43727373 - 43727237
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||| |||  ||| |||| ||||||||||||||||||||||| || |||||   ||||||||||  | |||||||||||||||| || | | |||    
T  43727373 gtaggtaaatgtgggaaacatgtagtgacagccatttgacaatgacaaacagatttgaatacggaaatttgccctatagtgacggattttggctgttact 43727274  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    | || |||||||||||  |||||| || ||| |||||    
T  43727273 ataagtcaaatttcttgcaaatttcttatagcgatac 43727237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 713
Target Start/End: Complemental strand, 20965919 - 20965861
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagc 713  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | |||||||||    
T  20965919 gtaggtaaaggtggaaaacatgtcgtgacagccatttgacactgacagatggatttagc 20965861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 655 - 716
Target Start/End: Original strand, 3118130 - 3118191
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctac 716  Q
    ||||||||||||| |||| ||||||||||| |||||||||| ||||| ||||||||| ||||    
T  3118130 gtaggtaaaggtggaaaacatgtcgtgacaaccatttgacactgacagacggatttatctac 3118191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 26782386 - 26782423
Alignment:
Q  317 ttgttaccataaattaaatgagcaatggagtatatata 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26782386 ttgttaccataaattaaatgagcaatggagtatatata 26782423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 26786891 - 26786943
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||| || |||||||||||||||||| || |||||||    
T  26786891 tggtaattttatgaattattaatctttagaatttatagtagaatataaaatat 26786943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 28041797 - 28041849
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  28041797 tggtacttttatgaattattcatttttagaatttatactagaataaaaaatat 28041849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 706 - 790
Target Start/End: Complemental strand, 38761673 - 38761589
Alignment:
Q  706 gatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaattttttgtagtgata 790  Q
    ||||||||||||||||||    |||||||||||||||| ||   ||||||||| ||||||||||| ||||||| |||||| ||||    
T  38761673 gatttagctacggaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttcttgtagcgata 38761589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 8638637 - 8638598
Alignment:
Q  6 aaccacacatcgttgatcttgttggtaacaattctttctc 45  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  8638637 aaccacacgtcgttgatcttgttggtaacaattctttctc 8638598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 642 - 701
Target Start/End: Original strand, 23804908 - 23804967
Alignment:
Q  642 tacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgaca 701  Q
    |||| ||||||| ||||||||||||| |||| |||  |||||||||||||||||||||||    
T  23804908 tacggttttgtccgtaggtaaaggtggaaaacatgcggtgacagccatttgacaatgaca 23804967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 609 - 726
Target Start/End: Complemental strand, 25253125 - 25253010
Alignment:
Q  609 taatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagc-catttgacaatgacatacgga 707  Q
    |||||||||| ||||||  || |||||||||| |||| ||||||| ||||||||||||| |||| |||  |||||| | |||||| |  ||||| | |||    
T  25253125 taatatttttaaaatggactccttagaattacctacg-ttttgtccgtaggtaaaggtggaaaacatgcagtgacaacacatttggc--tgacagaagga 25253029  T
Q  708 tttagctacggaaattaac 726  Q
    |||||||||||||||||||    
T  25253028 tttagctacggaaattaac 25253010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 5287089 - 5287037
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||| | || ||||| ||||||||||||||| ||||||||||    
T  5287089 tggtaattttatgaaatttttattttcagaatttatagtagaatagaaaatat 5287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 575
Target Start/End: Original strand, 24276660 - 24276711
Alignment:
Q  524 ggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||| ||||||||||||| ||| ||||||||| |||||| ||||||||||    
T  24276660 ggtaatattatgaattattcctttctagaatttaaagtagaatagaaaatat 24276711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 23804762 - 23804811
Alignment:
Q  526 taattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    ||||||||||||||||| ||||||  ||||||||||||| || |||||||    
T  23804762 taattttatgaattatttattttttaaatttatagtagaatataaaatat 23804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 435502 - 435617
Alignment:
Q  1 cattgaaccacacatcgttgatcttgttggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggaaactggtaga 100  Q
    |||||| ||||||||  ||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||| || |||  ||||||| ||    
T  435502 cattgagccacacattattgatcttgttggtaacaattttttctcacgagcttataagattattttactaacttattgacatgggttgacaactggtgga 435601  T
Q  101 cttacaacttttgttg 116  Q
    |||  |||||||||||    
T  435602 cttcgaacttttgttg 435617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 435619 - 435667
Alignment:
Q  526 taattttatgaattattcatttttagaatttatagtagattagaaaata 574  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  435619 taattttataaattattcatttttagaatttatagtagaatagaaaata 435667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 706
Target Start/End: Original strand, 435715 - 435826
Alignment:
Q  594 gtaggcagaggtccttaatattttttaaatggtatctttagaattacttacgattttgtctgtaggtaaaggtgaaaaatatgtcgtgacagccatttga 693  Q
    ||||| ||||||||||||| ||||  |||||||||| ||| |||||| |||  ||||||| ||||||||||||| ||||  ||   | ||| ||||||||    
T  435715 gtaggtagaggtccttaatgtttta-aaatggtatccttaaaattacctacagttttgtccgtaggtaaaggtggaaaacgtgcaattacaaccatttga 435813  T
Q  694 caatgacatacgg 706  Q
    |||||||||||||    
T  435814 caatgacatacgg 435826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 409 - 521
Target Start/End: Complemental strand, 812 - 698
Alignment:
Q  409 ggtgaatggtataatagttcatagttatggagaattattctagttaagtca--ttaagaatttattctaaaaattgattacattaatcaatttcaaattt 506  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||||| |||  | | ||||||||||| |||||| |||| | |||||||||| |||||     
T  812 ggtgaatggtataataattcatagttagggagaattattttagttaactcacttcaggaatttattcttaaaattaattatagtaatcaattttaaattc 713  T
Q  507 caatgatattgatta 521  Q
    ||||||| |||||||    
T  712 caatgatgttgatta 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 575
Target Start/End: Complemental strand, 663 - 611
Alignment:
Q  523 tggtaattttatgaattattcatttttagaatttatagtagattagaaaatat 575  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  663 tggtaattttatgaattattcatttttagaatttattgtagaatagaaaatat 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 911 - 845
Alignment:
Q  280 tttgtgtaataagctattatgaatagtgattcaaattttgttaccataaattaaatgagcaatggagtat 349  Q
    ||||| ||||||||||||||| ||||||||||||||   ||||||||||||||||||||||| |||||||    
T  911 tttgtctaataagctattatgtatagtgattcaaat---gttaccataaattaaatgagcaaaggagtat 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 655 - 791
Target Start/End: Complemental strand, 13116 - 12980
Alignment:
Q  655 gtaggtaaaggtgaaaaatatgtcgtgacagccatttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcact 754  Q
    ||||||||||||| |||| ||||||||||||||||||| || ||||| ||| ||||||||||  |||||    ||||| ||||| |||| ||   ||||     
T  13116 gtaggtaaaggtggaaaacatgtcgtgacagccatttgtcactgacagacgaatttagctacataaatttttcctatattgacgtattttggccgtcaca 13017  T
Q  755 aaaattcaaatttcttataaattttttgtagtgatac 791  Q
    ||||||||||||| || ||||||| |||||| |||||    
T  13016 aaaattcaaatttgttgtaaatttcttgtagcgatac 12980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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