View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_10 (Length: 604)
Name: NF16798_low_10
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 586
Target Start/End: Original strand, 4292704 - 4293286
Alignment:
| Q |
9 |
agcataggcaagcttgtttgtaaaagtatcacccgcagaagagttccattttaaagtgtcaggatgacaatcagcagatgccgatgcgtgctagcaggaa |
108 |
Q |
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| T |
4292704 |
agcataggcaagcctgtttgtaaaattaccacccacataagagtttcattttaaggtgtcagggtcacaatcagcagatgttgatgcatgctagcaggaa |
4292803 |
T |
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| Q |
109 |
tatggagcagctccactatataggcctatcaggccaagtgtcagtacagaagaacaccacttctccacatacttttgttttgccattccttgatagagat |
208 |
Q |
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| T |
4292804 |
tgtggagcagctccactatataggcctatcaggccaagtgtcagtacagaagaacaccacttctctacatacttttgttttgcctttccttgatagagat |
4292903 |
T |
|
| Q |
209 |
aggctagttttattgtttagctagggaattgaagtaagttgcagtagaatagatggcttgccatctatgcttcttacccttttcttttatcagagacatt |
308 |
Q |
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| T |
4292904 |
aggctagttttattgtttagctagggaattgaagtaagtggaagtagaaaagatggcttgccatctatgcttctcacacttttctttaatcaaagacatt |
4293003 |
T |
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| Q |
309 |
ttggtctccatttttagactctct-atttgtaatagggtgc-gggccactcctaccnnnnnnnnaatgcattttttagcctttat---nnnnnnntggtt |
403 |
Q |
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| T |
4293004 |
ttggtctccatttttagactctctcatttgtaatagggtgcaggcccactcctgccttttttttaatgcattttttagcctttataaaaaaaaaatggtt |
4293103 |
T |
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| Q |
404 |
aaaacctaatgacccatgatgaaaaactcttatactttttcatgctaaatgccaccataactaatacatgtgatacattcttattttaaattgattatat |
503 |
Q |
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| T |
4293104 |
aaaatctaatgacccatgatgaaaaactcttatactttttcatgctaaatgccaccataactaatatatgtgataaattcttattttaaatttattatat |
4293203 |
T |
|
| Q |
504 |
tactaattcacatgcaagtcggaagggcgtaaataaaagacgatgttttagaaatggtagagatgccaataggttatgttgtg |
586 |
Q |
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| T |
4293204 |
tactaattcacatgcaagttggaagggtgtacataaaagatgatgttttagaaatggtacagatgccaatagttaatgttgtg |
4293286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 30587465 - 30587553
Alignment:
| Q |
266 |
ttgccatctatgcttcttacccttttcttttatcagagacattttggtctccatttttagactctct-atttgtaatagggtgcgggcc |
353 |
Q |
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| T |
30587465 |
ttgccatctttgcttcttccccttttctttttttagtaacattttggtctacttttttagattctctcatttgtaatagggtgcaggcc |
30587553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 28138337 - 28138294
Alignment:
| Q |
289 |
tttcttttatcagagacattttggtctccatttttagactctct |
332 |
Q |
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| T |
28138337 |
tttcttttatcagagacattttggtctccatttttagattctct |
28138294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 353
Target Start/End: Original strand, 8058709 - 8058893
Alignment:
| Q |
172 |
tccacatacttttgttttgccattccttgatagagataggctagttttatt---gtttagctagggaattgaagtaagttgcagtagaatagatggcttg |
268 |
Q |
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||||||| |||||||||||| ||||||| | |||||| |||||| | || |||| |||||||| ||| ||| || ||||||| || |||| ||| |
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| T |
8058709 |
tccacattattttgttttgcctttccttgtttgagatatgctagtctagtttctgttttgctagggatttgttgtatgtggcagtagtttacatggattg |
8058808 |
T |
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| Q |
269 |
ccatctatgcttcttacccttttcttttatcagagacattttggtctccatttttagactctct-atttgtaatagggtgcgggcc |
353 |
Q |
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| T |
8058809 |
ccatctttacttcgc-cccttttcttttatcagacactttttagtcttctgttttagactctctcatatgtaatagggtgcaggcc |
8058893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 12107070 - 12107116
Alignment:
| Q |
286 |
ccttttcttttatcagagacattttggtctccatttttagactctct |
332 |
Q |
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| T |
12107070 |
ccttttcttttatcagagactttttagtcttcttttttagactctct |
12107116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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