View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_14 (Length: 546)
Name: NF16798_low_14
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 5 - 530
Target Start/End: Original strand, 4202957 - 4203485
Alignment:
| Q |
5 |
tacttgggaggatttgaaggcagcaatcatacgaaaatttgaaccgtccatacttcagagcccttgtgaatcattaccaagtct-aaacaaacggggact |
103 |
Q |
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| T |
4202957 |
tacttgggaggatttgaaggcagcaatcatacgaagatttgaaccgtccatacttcagagcccttgtgaatcattaccaagtctcaaacaaacggggact |
4203056 |
T |
|
| Q |
104 |
gtggaggaatatagagaacaatttgaattatacgctggaccactcgtaagggctgaacgagagcatcttaaagcaatttttctcaatggactgaaggatg |
203 |
Q |
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| T |
4203057 |
gtggaggaatatagagaacaatttgaattatacgctggaccactcgtaagggctgaacgagagcatcttaaagcaatttttctcaatggactgaaggatg |
4203156 |
T |
|
| Q |
204 |
tagtgaaggcagaactgaaattgcacccagtaaactccttaccagagatgatggactatgcccaaataattgattagaagaattttttgataaataaggg |
303 |
Q |
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| T |
4203157 |
tagtgaaggcagaactgaaattgcacccagtaaactccttaccagagatgatggactatgcccaaataattgatcagaagaattttttgataaataaggg |
4203256 |
T |
|
| Q |
304 |
tactgttaggatgaatgaa-ggggcagtttcgctaaaagccatccaagaaacagaaccgcgacgtgggaaccaatcaacaagttagcacttcagacaaag |
402 |
Q |
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| T |
4203257 |
tactgttaggatgaatgaagggggcagtttcgctaaaagccatccaagaaacagaaccgcgacgtgggaaccaatcaacaagttagcacttcagacaaag |
4203356 |
T |
|
| Q |
403 |
tccttgggaaacagttccattggagaatctagtgcgggaggacgacaggatcatttaggggaagagcgtttagaagattaatgg-atgacaaaacgcgag |
501 |
Q |
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| T |
4203357 |
tccttgggaaacagttccattggagaatctagtgcaggaggacgacaggatcatttaggggaagagcgtttagaagattaatggaatgacaaaacgcgag |
4203456 |
T |
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| Q |
502 |
aaaaatcaagagtggttgagagagcatag |
530 |
Q |
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|||||||||| ||||||||||||| |||| |
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| T |
4203457 |
aaaaatcaagggtggttgagagagaatag |
4203485 |
T |
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