View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_15 (Length: 523)

Name: NF16798_low_15
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_15
NF16798_low_15
[»] chr2 (4 HSPs)
chr2 (113-322)||(21183790-21183998)
chr2 (322-408)||(21187588-21187674)
chr2 (321-389)||(1925191-1925259)
chr2 (322-371)||(25815358-25815407)
[»] chr8 (4 HSPs)
chr8 (113-307)||(18394537-18394729)
chr8 (113-248)||(3372919-3373050)
chr8 (322-371)||(19463376-19463425)
chr8 (322-371)||(19561055-19561104)
[»] chr3 (4 HSPs)
chr3 (113-322)||(29909829-29910034)
chr3 (322-390)||(8334215-8334283)
chr3 (322-389)||(29899685-29899752)
chr3 (326-378)||(16202741-16202793)
[»] chr1 (5 HSPs)
chr1 (113-322)||(14710237-14710442)
chr1 (1-117)||(3396840-3396956)
chr1 (324-389)||(16765245-16765310)
chr1 (322-389)||(14715184-14715251)
chr1 (323-376)||(18491401-18491454)
[»] chr6 (4 HSPs)
chr6 (113-250)||(16359579-16359711)
chr6 (113-250)||(18848746-18848879)
chr6 (322-360)||(12786607-12786645)
chr6 (268-322)||(16359712-16359766)
[»] scaffold0215 (1 HSPs)
scaffold0215 (113-167)||(25577-25631)
[»] scaffold0285 (1 HSPs)
scaffold0285 (321-389)||(9102-9170)
[»] chr7 (1 HSPs)
chr7 (322-389)||(14710572-14710639)
[»] scaffold0021 (1 HSPs)
scaffold0021 (322-408)||(288-374)
[»] scaffold0047 (1 HSPs)
scaffold0047 (324-371)||(57668-57715)
[»] chr5 (2 HSPs)
chr5 (321-408)||(19304541-19304628)
chr5 (322-389)||(22370669-22370736)
[»] chr4 (1 HSPs)
chr4 (321-378)||(17735957-17736014)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 21183998 - 21183790
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagact-aagttttctttctttctctgggagtgtatatggtctgttgtagttgacaag 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||| ||||||||||||||||    
T  21183998 ttttggataaatgcaacgatgtaaaaaaccctctaatataagaagacttaagtttttttt--ttctctgggagtgtatatggtttgttgtagttgacaag 21183901  T
Q  212 tcgtttgtagaagtatgagttcttaaaaaggaaattggtggctggaccaatgaatacttttacaattaattttcaagatggttttattggtggttataag 311  Q
    ||||||| ||||||||||||| |  ||||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21183900 tcgtttgcagaagtatgagttatggaaaaggaaattggaggctggaccaatgagtacttctactattaattttcaagatggttttattggtggttataag 21183801  T
Q  312 gctcatatctc 322  Q
    |||||||||||    
T  21183800 gctcatatctc 21183790  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 21187674 - 21187588
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagtatcataggaaacgattttc 408  Q
    |||||||||||||||| | || ||||||||||||||||| ||| |||||| |||||| |||||||||||| ||||| ||||||||||    
T  21187674 cactacaacattttggctttacgacaacgcctaattttttgaatgtaaaaaaactgttttggtagagtattatagggaacgattttc 21187588  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 1925259 - 1925191
Alignment:
Q  321 tcactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    |||||||||||||||||  ||| |||||||||||| ||||||||||||||| ||| || ||||||||||    
T  1925259 tcactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagt 1925191  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 25815407 - 25815358
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaa 371  Q
    ||||||||||||||||  ||| |||||||||||| |||||||||||||||    
T  25815407 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaa 25815358  T

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Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 18394537 - 18394729
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaagt 212  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||||    
T  18394537 ttttgaataaatgcaacaatgtaaaaagccctctaatataagaagactaagtttttttt--ttctctgggagtgtatatggtctgttgtagttgataagt 18394634  T
Q  213 cgtttgtagaagtatgagttcttaaaaaggaaattggtggctggaccaatgaatacttttacaattaattttcaagatggttttattggtggtta 307  Q
    |||||| ||||||||||||| | |||||| ||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  18394635 cgtttgcagaagtatgagttttgaaaaagaaaattggaggctggaccaatgagtacttctactattaattttcaagatggttttattggtggtta 18394729  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 3372919 - 3373050
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaa-aaccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaag 211  Q
    ||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||   ||||| |||||| |||| | |||||||| ||||| |    
T  3372919 ttttgtataattgcaacaatgtaaaaaaaccctctaatttaagaagactaagtttt-tttc---ctctgtgagtgtctatgatttgttgtagctgacagg 3373014  T
Q  212 tcgtttgtagaagtatgagttcttaaaaaggaaattg 248  Q
    | ||||| |||||||| |||||  ||| |||||||||    
T  3373015 tggtttgcagaagtat-agttccgaaataggaaattg 3373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 19463376 - 19463425
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaa 371  Q
    |||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  19463376 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaa 19463425  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 19561055 - 19561104
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaa 371  Q
    |||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  19561055 cactacaacattttggctctacgacaacgcctaaatttcggaaggtaaaa 19561104  T

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Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 113 - 322
Target Start/End: Original strand, 29909829 - 29910034
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaagt 212  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| |||||    || | ||||| ||||||||||||||||||||||||    
T  29909829 ttttggataattgcaacaatgtaaaaaactctctaatataagaagattaatttttttttct----ctagaagtgtctatggtctgttgtagttgacaagt 29909924  T
Q  213 cgtttgtagaagtatgagttcttaaaaaggaaattggtggctggaccaatgaatacttttacaattaattttcaagatggttttattggtggttataagg 312  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  29909925 cgtttgcagaagtatgagttctgaaaaaggaaattggaggctggaccaatgagtacttctactattaattttcaagatgtttttattggtggttataagg 29910024  T
Q  313 ctcatatctc 322  Q
    ||||||||||    
T  29910025 ctcatatctc 29910034  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 8334215 - 8334283
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagta 390  Q
    |||||||||||||||| |||| || |||||||||||| ||||| ||||||||||||| |||||||||||    
T  8334215 cactacaacattttggctctacgagaacgcctaatttatggaatgtaaaataactgttttggtagagta 8334283  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 29899685 - 29899752
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    ||||||||||||||||  ||| |||||||||||| |||||||| |||||| ||| ||  |||||||||    
T  29899685 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagt 29899752  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 16202741 - 16202793
Alignment:
Q  326 acaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgt 378  Q
    |||||||||| | ||||  |||||||||||||||| |||||||||| ||||||    
T  16202741 acaacattttagctctacaacaacgcctaattttttgaaggtaaaaaaactgt 16202793  T

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Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 14710442 - 14710237
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaagt 212  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| |||||    || | ||||| ||||||||||||||||||||||||    
T  14710442 ttttggataattgcaacaatgtaaaaaactctctaatataagaagattaatttttttttct----ctagaagtgtctatggtctgttgtagttgacaagt 14710347  T
Q  213 cgtttgtagaagtatgagttcttaaaaaggaaattggtggctggaccaatgaatacttttacaattaattttcaagatggttttattggtggttataagg 312  Q
    |||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  14710346 cgtttgcagaagtatgagttctgaaaaaggaaattggaggctggaccaatgagtacttctactattaattttcaagatgtttttattggtggttataagg 14710247  T
Q  313 ctcatatctc 322  Q
    ||||||||||    
T  14710246 ctcatatctc 14710237  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3396956 - 3396840
Alignment:
Q  1 tattttttcaataaaaaatatattggtcgaccttcgaaccttgaaaattttatattagcactctcttcttctaatacatcctaataagttagttacttca 100  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  3396956 tattttttcgataaaaaatatattggtcgaccttcgaacgttgaaaattttatattagcactctcttcttctaatacatcctaataagttacttacttct 3396857  T
Q  101 tttttaaaaatattttg 117  Q
    |||||||||||||||||    
T  3396856 tttttaaaaatattttg 3396840  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 16765310 - 16765245
Alignment:
Q  324 ctacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||| || |||  |||||||||    
T  16765310 ctacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagt 16765245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 14715251 - 14715184
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    ||||||||||||||||  ||| |||||||||||| |||||||| |||||| ||| ||  |||||||||    
T  14715251 cactacaacattttggccctacgacaacgcctaaattttggaaagtaaaaaaaccgtcctggtagagt 14715184  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 18491454 - 18491401
Alignment:
Q  323 actacaacattttggttctaagacaacgcctaatttttggaaggtaaaataact 376  Q
    |||||||||||||||  ||| ||||||||||||||||| || ||||||| ||||    
T  18491454 actacaacattttgggcctacgacaacgcctaattttttgacggtaaaaaaact 18491401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 16359579 - 16359711
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaagt 212  Q
    ||||| |||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||   |||||||||||| |||| | |||||||| ||||| ||    
T  16359579 ttttgtataattgcaacaatgtaaaaaaccctataatttaagaagactaagtttt-tttc---ctctgggagtgtctatgatttgttgtagctgacaggt 16359674  T
Q  213 cgtttgtagaagtatgagttcttaaaaaggaaattggt 250  Q
     ||||| |||||||| ||||   |||||||||||||||    
T  16359675 ggtttgcagaagtat-agtttcgaaaaaggaaattggt 16359711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 18848879 - 18848746
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaa-ccctctaatataagaagactaagttttctttctttctctgggagtgtatatggtctgttgtagttgacaag 211  Q
    ||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||||   ||||| |||||| |||| | |||||||| ||||| |    
T  18848879 ttttgtataattgcaacaatgtaaaaaaaccctctaatttaagaagactaagtttt-tttc---ctctgtgagtgtctatgatttgttgtagctgacagg 18848784  T
Q  212 tcgtttgtagaagtatgagttcttaaaaaggaaattggt 250  Q
    | ||||| |||||||| |||||  ||| |||||||||||    
T  18848783 tggtttgcagaagtat-agttccgaaataggaaattggt 18848746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 12786607 - 12786645
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaattttt 360  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  12786607 cactacaacattttgactctaagacaacgcctaattttt 12786645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 16359712 - 16359766
Alignment:
Q  268 cttttacaattaattttcaagatggttttattggtggttataaggctcatatctc 322  Q
    ||||||| ||||||| | |||||| ||||||||||||||||||  ||||||||||    
T  16359712 cttttactattaattcttaagatgcttttattggtggttataatactcatatctc 16359766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 25577 - 25631
Alignment:
Q  113 ttttggataaatgcaacaatgtaaaaaaccctctaatataagaagactaagtttt 167  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  25577 ttttgtataattgcaacaatgtaaaaaaccctctaatttaagaagactaagtttt 25631  T

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Target: scaffold0285 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 9170 - 9102
Alignment:
Q  321 tcactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||| || |||  |||||||||    
T  9170 tcactacaacattttggctctacgacaacgcctaaattttggaaggtaaaaaaattgttctggtagagt 9102  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 14710572 - 14710639
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||||||||| ||| || ||||||||||    
T  14710572 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaaaaccgttttggtagagt 14710639  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 374 - 288
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagtatcataggaaacgattttc 408  Q
    ||||||||||||||||  ||| |||||||||||| |||||||||||||||  | |||  |||||||||| ||| |  ||||||||||    
T  374 cactacaacattttggccctacgacaacgcctaaattttggaaggtaaaaatattgttctggtagagtaccatggacaacgattttc 288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 57715 - 57668
Alignment:
Q  324 ctacaacattttggttctaagacaacgcctaatttttggaaggtaaaa 371  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||    
T  57715 ctacaacattttggctctacgacaacgcctaattttttaaaggtaaaa 57668  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 19304541 - 19304628
Alignment:
Q  321 tcactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagtatcataggaaacgattttc 408  Q
    ||||||||| |||||||  |||  ||||||||||| ||||||||||||||| || |||  |||||||||| ||| |  ||||||||||    
T  19304541 tcactacaatattttggccctacaacaacgcctaaattttggaaggtaaaaaaattgttctggtagagtaccatggacaacgattttc 19304628  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 22370669 - 22370736
Alignment:
Q  322 cactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgtattggtagagt 389  Q
    |||||||||||||||   ||| |||||||||||| ||||| ||||||||| ||| || ||||||||||    
T  22370669 cactacaacattttgaccctacgacaacgcctaaattttgaaaggtaaaaaaaccgttttggtagagt 22370736  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 17736014 - 17735957
Alignment:
Q  321 tcactacaacattttggttctaagacaacgcctaatttttggaaggtaaaataactgt 378  Q
    |||||||||||||||||  ||| ||||||| ||||||||| || ||||||| ||||||    
T  17736014 tcactacaacattttggccctacgacaacgtctaattttttgacggtaaaaaaactgt 17735957  T

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