View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_17 (Length: 501)
Name: NF16798_low_17
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 7660393 - 7660867
Alignment:
| Q |
14 |
aatattcataacctgaaaaaatcccacactttgataannnnnnn-cttgccttaattagaattcattaacatgtaggtcaaccactttatttgaaaaaac |
112 |
Q |
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| T |
7660393 |
aatattcgtaacctgaaaaaatcccacactttgataattttttttcttgccttaattagaattcattaacatgtaggtcaaccactttatttgaaaaaac |
7660492 |
T |
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| Q |
113 |
ctgccctaaaaggaaaaatcaccaaagatgagtatggtccagaaggagaaaaatattaaggataataaataaccattagaatgtgggacccattcatcca |
212 |
Q |
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| T |
7660493 |
ctgccctaaaaggaaaaatcaccaaagatgtgtatggtccagaaggagaaaaatattaagggtaataaataaccattagaatgtgggacccactcatcca |
7660592 |
T |
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| Q |
213 |
taatactgtatcaggacaaagttgaacttttattggttaaaaagggacaaagagaagaaaaaatcataagaaaat-ggatacaataattgcgtcaacccg |
311 |
Q |
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| T |
7660593 |
t-atattgtataaggacaaagctgaacttttattggttaaaaaaggacaaagagaagaaaaaatcataagaaaatgggatac-ataattgcgtcaacccg |
7660690 |
T |
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| Q |
312 |
acgaattaattgaatatttttacac--nnnnnnnnngctcaatgcattgactttaaattgtatagtacattaactaattgtgtagttagacattaaaata |
409 |
Q |
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| T |
7660691 |
acgaattaattgaatatttttacacaaaaaaaaaaaactcaatgcattgactttaaattgtatagtacattaactaattgtgtagttagactttaaaata |
7660790 |
T |
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| Q |
410 |
ttgatacatgctctggccacaggaatagtcctccacacgtagagcacatgacaacctcaatttctatttgaagatag |
486 |
Q |
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| T |
7660791 |
ttgatacatgctctggccacaggaatagtcctccacacgtagagcacatgacaacctcaatttctatttgaagatag |
7660867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 7661976 - 7662052
Alignment:
| Q |
260 |
caaagagaagaaaaaatcataagaaaatgg-atacaataattgcgtcaacccgacgaattaattgaatatttttacac |
336 |
Q |
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| T |
7661976 |
caaagagaagataaaaccataagaaaatgggataca-tagttgcgtcaacccgatgaattaattgaatattttaacac |
7662052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 7623217 - 7623128
Alignment:
| Q |
17 |
attcataacctgaaaaaatcccacactttgataannnnnnncttgccttaattagaattcattaacatgtaggtcaaccactttatttga |
106 |
Q |
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| T |
7623217 |
attcgtaacctgaaaaaaccccacactttgatattatttttcttgccttaattaggatttgttaacatgaaggtcaaccactttatttga |
7623128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 7622212 - 7622136
Alignment:
| Q |
260 |
caaagagaagaaaaaatcataagaaaatgg-atacaataattgcgtcaacccgacgaattaattgaatatttttacac |
336 |
Q |
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| T |
7622212 |
caaagagaagataaaaccataagaaaatgggataca-tagttgcgtcaacccgatgaattaattaaatattttaacac |
7622136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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