View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_18 (Length: 490)
Name: NF16798_low_18
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 44729374 - 44729833
Alignment:
| Q |
15 |
cacagattctaacacatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaacacttccaaccaatctatgaatgttgtta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44729374 |
cacagattctaacacatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaactcttccaaccaatctatgaatgttgtta |
44729473 |
T |
|
| Q |
115 |
caatctgctccacgtgctttacctccctgcctctgcattcctccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44729474 |
caatctgctccacgtgctttacctccctgcctctgcattcatccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttc |
44729573 |
T |
|
| Q |
215 |
aacccctgaattctgctcttaaatatggaccccacagcttttctccctccacata---accttcatagcgcttctaacaatagccatcacatcagtatgc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44729574 |
aacccctgaattctgctcttaaatatggaccccacagcttttctccctccacataaccaccttcatagcgcttctaacaatagccatcacatcagtatgc |
44729673 |
T |
|
| Q |
312 |
cttctaatatcacaactaaacttccttcaatgacactagtattaatttggattatatttttcgcccctgaactcttgaacattttaagaatctcttaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44729674 |
cttctaatatcacaactaaacttccttcaatgacactagtattaatttggattata-ttttcacccctgaactcttgaacattttaagaatctcttaaat |
44729772 |
T |
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| Q |
412 |
gcaaaaaactcttgcatttttatccattactaaggtttaatcctgaaagtatggtactgat |
472 |
Q |
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| T |
44729773 |
gcaaaaaactcttgcatttttatccattactaaggtttaatcctgaaagtatggtactgat |
44729833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 354 - 470
Target Start/End: Complemental strand, 44951052 - 44950935
Alignment:
| Q |
354 |
taatttggattatatttttcgcccctgaactcttgaacattttaagaatctcttaaatgcaa-aaaactcttgcatttttatccattactaaggtttaat |
452 |
Q |
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|||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44951052 |
taatttggattatatttttcacccttgaacgcttgaacattttaagaatctcttaaatgcaaaaaaactcttgcatttttatccattactaaggtttaat |
44950953 |
T |
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| Q |
453 |
cctgaaagtatggtactg |
470 |
Q |
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||| ||| |||||||||| |
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| T |
44950952 |
cctaaaaatatggtactg |
44950935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 16113571 - 16113638
Alignment:
| Q |
385 |
cttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttatccattactaaggtttaat |
452 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
16113571 |
cttgtacattttataaatctcttaaatgcaaaaaactcttgtgtttttatccatggctaaggtttaat |
16113638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 44624333 - 44624392
Alignment:
| Q |
385 |
cttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttatccattactaa |
444 |
Q |
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| T |
44624333 |
cttgaacatttttagaatctcttaagtgaaaaaaactcttgtatttttatccataactaa |
44624392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 449
Target Start/End: Complemental strand, 39397558 - 39397491
Alignment:
| Q |
382 |
actcttgaacattttaagaatctcttaaatgcaaaaaactcttgcatttttatccattactaaggttt |
449 |
Q |
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| T |
39397558 |
actcttgaaccttctatgaatctcttatatgcaaaaaactcttgcgtttttattcatggctaaggttt |
39397491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 452
Target Start/End: Original strand, 39468641 - 39468709
Alignment:
| Q |
385 |
cttgaacattttaagaatctcttaaatgc-aaaaaactcttgcatttttatccattactaaggtttaat |
452 |
Q |
| |
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||||||||||||| ||||||||||||| | ||||||| |||| ||||||||||| |||||||||||| |
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| T |
39468641 |
cttgaacattttatgaatctcttaaatccaaaaaaacgcttgtgtttttatccatggctaaggtttaat |
39468709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 39478855 - 39478821
Alignment:
| Q |
385 |
cttgaacattttaagaatctcttaaatgcaaaaaa |
419 |
Q |
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| T |
39478855 |
cttgaacattttatgaatctcttaaatgcaaaaaa |
39478821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 17059856 - 17059902
Alignment:
| Q |
390 |
acattttaagaatctcttaaatgcaaaaaactcttgcatttttatcc |
436 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
17059856 |
acattttatgaatctcttaaatgcaaaaagctcttgcatttttatcc |
17059902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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