View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_21 (Length: 430)
Name: NF16798_low_21
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 10991870 - 10991604
Alignment:
| Q |
13 |
cagagtaacttaaagcatcataatgtcaaggagcaaatactactgtatctcaaatatgtttttatgagaaaggatgcatcaaagcctaggatattgcatg |
112 |
Q |
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| T |
10991870 |
cagagtaacttaaagcatcataatgtcaaggagcaaatactactgtatctcaaatatgtttttatgagaaaggatgcatcaaagcctaggatattgcatg |
10991771 |
T |
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| Q |
113 |
cacaaaatcaaattggtagaagagtttaaattggttgttcaatccaaaaggagactcaatccaacaatgaatgaggtagttaaaaaaggaagtgctgaaa |
212 |
Q |
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| T |
10991770 |
cacaaaatcaaattggtaggagagtttaaattggttgttcaatccaaaaggagactcaatccaacaatgaatgaggtagttaaaaaaggaagtgctgaaa |
10991671 |
T |
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| Q |
213 |
cttttagatggcggaatgatatatcgtattctaatagcttgtgggttagtccagttcaagtggtacc |
279 |
Q |
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| T |
10991670 |
cttttagatggcgaaatgatatatcgtattctaatagcttgtgggttagaccagttcaagtggtacc |
10991604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 10991332 - 10991212
Alignment:
| Q |
291 |
gaatgtcctttagattgtgcaatgcagtaacaatgtttcaaagatgaattctttcaaatattctcatacttgatttagaagaacattgaattctcgatgg |
390 |
Q |
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| T |
10991332 |
gaatgtcctttagattgtgcaatgcactaacaatgttttaaagatgaattctttcaaatattctcatgcttgatttagaagaacattgaattctcgatgg |
10991233 |
T |
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| Q |
391 |
atgatttttagatgtttggaa |
411 |
Q |
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| T |
10991232 |
atgatttttagacgtttggaa |
10991212 |
T |
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