View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_22 (Length: 425)
Name: NF16798_low_22
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 39 - 422
Target Start/End: Complemental strand, 42818425 - 42818042
Alignment:
| Q |
39 |
aacgacaaagttgattaataactaattctctgcacaatacaaaccgaaacgggtaagacagaaacaacaaagcaaaatgtgttaaatataggcagagcac |
138 |
Q |
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| T |
42818425 |
aacgacaaagttgattaataactaattccctgcacaatacaaaccgaaacgggtaagacagaaacaacaaagcaaaatatgttaaatataggctaaacgc |
42818326 |
T |
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| Q |
139 |
ccaaaagaaaacccatttaaaaatcaatagacatcatctaacttaggtcaatcactaacaccaataagaaactaaccatcaaatccaaagtcaaatctca |
238 |
Q |
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| T |
42818325 |
ccaaaagaaaacccatttaaaaatcaatagacaccatctaactaagggcaatcactaacaccaataagaaactaaccatcaaatccaaagtcaaatctca |
42818226 |
T |
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| Q |
239 |
cacaactgcataaaccaaaacttgagccaaaaccttaaactctacagaaaccctaaacacctattgtcaactacttacaccaaaaccatcactgcagcta |
338 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
42818225 |
cacaactgcataaactaaaatttgagccaaaaccttaaactctacagaaaccctaaacacctattgttaactacttacaccaaaaccatcaccgcagcta |
42818126 |
T |
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| Q |
339 |
atcttaatcaaacatccaaaaatgacttattccgatttcgccaacacttattgggatttcaccaccactctacccctcgatatt |
422 |
Q |
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| T |
42818125 |
atcttaattaaacatccaaaaatgacttattccgatttcaccaacacttattgggatttcaccaccactctacccctggatatt |
42818042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 9238523 - 9238584
Alignment:
| Q |
93 |
aagacagaaacaacaaagcaaaatgtgttaaatataggcagagcacccaaaagaaaacccat |
154 |
Q |
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| T |
9238523 |
aagatagaaacaacaaagcaaaagatgtcatatataggcagaacactcaaaagaaaaaccat |
9238584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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