View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16798_low_23 (Length: 419)
Name: NF16798_low_23
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 52512336 - 52511946
Alignment:
| Q |
10 |
gagatgaagaataataatattgacgagcacaaggatatgaatgctctcatgctcaagacactttttacaggaggagaattttataacgctgaaaattatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512336 |
gagatgaagaataataatattgacgagcacaaggatatgaatgctctcatgctcaagacactttttacaggaggagaattttataacgctgaaaattatc |
52512237 |
T |
|
| Q |
110 |
ctaactttggagacacaagtattccaactccaagtagaggcaacaataatattagtagccagattcacccgagcatcgatatatcaaacttgaatcatta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52512236 |
ctaactttggagacacaagtattccaactccaagtagaggcaacaataatattagtagccagattcacccgagcatcgatatatcaaacttgaaccatta |
52512137 |
T |
|
| Q |
210 |
ctcgtcttcgtcttctaccacatccttggatatgaacatgcagtcattacatctattaactaattcatcaacatcatttagtgctaatttacaagaccat |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512136 |
ctcgtcttcgtctgctaccacatccttggatatgaacatgcagtcattagatctattaactaattcatcaacatcatttagtgctaatttacaagaccat |
52512037 |
T |
|
| Q |
310 |
catcatagtagatttactactcatgatcatgacaacctttcttttcatcttcatcttatgcagcaccaccaccccacgaacatgtcctctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
52512036 |
catcatagtagatttactactcatgatcatgacaacctttcttttcatcttcatcctatgcaacaccaccaccccacgaacatgtcctctt |
52511946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University