View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16798_low_27 (Length: 381)

Name: NF16798_low_27
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16798_low_27
NF16798_low_27
[»] chr7 (8 HSPs)
chr7 (17-363)||(27272552-27272899)
chr7 (17-140)||(27282495-27282617)
chr7 (172-263)||(27282391-27282490)
chr7 (160-237)||(27249820-27249897)
chr7 (181-237)||(27243887-27243943)
chr7 (37-77)||(27251241-27251281)
chr7 (159-191)||(27135565-27135597)
chr7 (159-191)||(27159012-27159044)
[»] chr1 (3 HSPs)
chr1 (163-237)||(14883504-14883578)
chr1 (152-207)||(14889136-14889191)
chr1 (36-99)||(14888952-14889016)
[»] chr5 (1 HSPs)
chr5 (316-354)||(39033942-39033980)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 27272899 - 27272552
Alignment:
Q  17 tgtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtccctattttataatctattaaatattatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27272899 tgtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtcactattttataatctattaaatattatt 27272800  T
Q  117 ctgaatagaattaacttggtgcaacacacaggtacgcactacagtgataattactgtaaaatgtaactaattcaattcaatgtaagaattatgagagatg 216  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27272799 ctaaatagaattaacttggtgcaacacacaggtaggcactacagtgataattactgtaaaatgtaactaattcaattcaatgtaagaattatgagagatg 27272700  T
Q  217 acagtaaatccaaatgtccatgattattttgaattgaaatatttcag-nnnnnnnnnaacctaacaaagtagctagaaaatacaaaggaaggaggggatg 315  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  27272699 acagtacatcctaatgtccatgattattttgaattgaaatatttcagttttttttttaacctaacaaagtagctagaaaatacaaaggaaggaggggatg 27272600  T
Q  316 aaaccaaaacctccttaatgaggaacaaatctaaacaagggtaaccct 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27272599 aaaccaaaacctccttaatgaggaacaaatctaaacaagggtaaccct 27272552  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 27282617 - 27282495
Alignment:
Q  17 tgtaacccgacccccttttgatcttcttcccactagataatccgattaagattgttaatctcttaatttgtccctattttataatctattaaatattatt 116  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||| |||||||||| ||||||||| |||  |    
T  27282617 tgtaaccc-acccccttttgatcttcttccctctagattatccgattaagattgttaatcttttattttgtcactattttatattctattaaaaattgct 27282519  T
Q  117 ctgaatagaattaacttggtgcaa 140  Q
    || |||||||||||||| ||||||    
T  27282518 ctcaatagaattaacttcgtgcaa 27282495  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 27282490 - 27282391
Alignment:
Q  172 gtaaaatgtaactaattcaattcaatgtaagaattatgagagatgacagtaaatccaaatgtcca--------tgattattttgaattgaaatatttcag 263  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||| ||        |||||||||||||||||||||||||||    
T  27282490 gtaaaatgtaactaattcaattcaatgtaagaattaagagagatgatggtaaatccaaatgtgcatcagatattgattattttgaattgaaatatttcag 27282391  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 27249897 - 27249820
Alignment:
Q  160 gtgataattactgtaaaatgtaactaattcaattcaatgtaagaattatgagagatgacagtaaatccaaatgtccat 237  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||  ||||||| ||||||||||    
T  27249897 gtgataattattgcaaaatgttactaattcaattcaatgtaagaattaagagagatgattgtaaatcaaaatgtccat 27249820  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 27243943 - 27243887
Alignment:
Q  181 aactaattcaattcaatgtaagaattatgagagatgacagtaaatccaaatgtccat 237  Q
    ||||||| ||||| ||||||||||||| |||||||| |  |||||||||||||||||    
T  27243943 aactaatacaattaaatgtaagaattaagagagatggcgctaaatccaaatgtccat 27243887  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 27251281 - 27251241
Alignment:
Q  37 atcttcttcccactagataatccgattaagattgttaatct 77  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  27251281 atcttcttccctctagacaatccgattaagattgttaatct 27251241  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 27135597 - 27135565
Alignment:
Q  159 agtgataattactgtaaaatgtaactaattcaa 191  Q
    |||||||||||||||||||| ||||||||||||    
T  27135597 agtgataattactgtaaaatttaactaattcaa 27135565  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 27159044 - 27159012
Alignment:
Q  159 agtgataattactgtaaaatgtaactaattcaa 191  Q
    |||||||||||| ||||||||||||||||||||    
T  27159044 agtgataattaccgtaaaatgtaactaattcaa 27159012  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 14883504 - 14883578
Alignment:
Q  163 ataattactgtaaaatgtaactaattcaattcaatgtaagaattatgagagatgacagtaaatccaaatgtccat 237  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  14883504 ataatcactataaaatgaaactaattcaattcaatgtaagaattaagagagatggcagtaaatccaaatgtccat 14883578  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 14889136 - 14889191
Alignment:
Q  152 gcactacagtgataattactgtaaaatgtaactaattcaattcaatgtaagaatta 207  Q
    |||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||    
T  14889136 gcactatagtaatatttactgtaaaatgtaactagttcaattcaatgtaagaatta 14889191  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 14888952 - 14889016
Alignment:
Q  36 gatcttcttcccactagataatccgatt-aagattgttaatctcttaatttgtccctattttata 99  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||  || ||||||  |||||||||    
T  14888952 gatcttctaccctctagataatccgattaaagattgttaatcttatattttgtcattattttata 14889016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 39033980 - 39033942
Alignment:
Q  316 aaaccaaaacctccttaatgaggaacaaatctaaacaag 354  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  39033980 aaaccaaaacctccttaatatggaacaaatctaaacaag 39033942  T

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