View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_28 (Length: 379)
Name: NF16798_low_28
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 42765817 - 42766170
Alignment:
| Q |
20 |
cttgactactttgaaagtacccagaccttagtttttctaaaaatattatatcttcaacacgggacaggtaccatattcaatcgatgcaacataaccgttg |
119 |
Q |
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| T |
42765817 |
cttgactactttgaaagtacccagaccttagtttttctaaaaatattatatcttcagcacgggacaggtaccatattcaatcgatgcaacataaccgttg |
42765916 |
T |
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| Q |
120 |
cataatttacgtaaattataatgttttatctcaattaatcgtgcagaatacttcaatcatttaggatcaaataattggtgttgttggtattgtttaaatt |
219 |
Q |
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| T |
42765917 |
cataatttacgtaaattataatgttttatctcaattaatcgtgcagaatacttcaatcatttaggatcaaataattggtgttgttggtattgtttaaatt |
42766016 |
T |
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| Q |
220 |
tgacagagtattggttaagtacactatatagtagtatatcattatcgcaatatttctcttagaaaattattgtaactatatcattattagtttatataaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42766017 |
tgacagagtattggttaagtacactatatagtagtatatcattatcgcaatatttctcttagaaaattattgtaac-atatcattattagtttatataaa |
42766115 |
T |
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| Q |
320 |
tgtactggtttagcgaagaacatttgaatgagattacaaggatcttcttctctct |
374 |
Q |
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| T |
42766116 |
tgtactggtttagccaagaacatttgaatgagattacaaggatcttcttctctct |
42766170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 42808195 - 42808242
Alignment:
| Q |
20 |
cttgactactttgaaagtacccagaccttagtttttctaaaaatatta |
67 |
Q |
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| T |
42808195 |
cttgactactttgaaagtacccagaccttagtttttctaaaaatatta |
42808242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 33051424 - 33051471
Alignment:
| Q |
20 |
cttgactactttgaaagtacccagaccttagtttttctaaaaatatta |
67 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33051424 |
cttgactactttgaaagtacccagaccctagtttttctaaaaatatta |
33051471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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