View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_29 (Length: 374)
Name: NF16798_low_29
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 29569904 - 29569567
Alignment:
| Q |
18 |
atgaaaataacaacgacgatttaaaatgtcaaaacatccaacaacggataactcaacgcatccaatgactaaatgacaaacaagtaccataagaaaaggg |
117 |
Q |
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| T |
29569904 |
atgaaaataacaacgacgatttaaaatgtcaaaacatccaacaacggataactcaacgcatccaatgactaaatgacaaacaagtaccataagaaaaggc |
29569805 |
T |
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| Q |
118 |
cagaaaggcaaactttattttacataggaacacaaaaaccataaaagacaaccacattaagtaaaagaaacagaatcagaagttttgatgaatttcggga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29569804 |
cagaaaggcaaactttattttacataggaacacaaaaaccataaaagacaaccacattaagtaaaagaaacagaatcagaagttttgatgaatttcagga |
29569705 |
T |
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| Q |
218 |
cgaacttctggatgaacttctctttccagcattgcagagtcgaaacggatgaaccgcagtcagaagtctttatgaacttctggaaggcaacacagccacc |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569704 |
cgaacttctggataaacttctctttccagcattgcagagtcgaaaaggatgaaccacagtcagaagtctttatgaacttctggaaggcaacacagccacc |
29569605 |
T |
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| Q |
318 |
tctaccaagttcctggtaacacttctcttcgcggcagt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29569604 |
tctaccaagttcctggtaacacttctcttcgcggcagt |
29569567 |
T |
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