View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16798_low_30 (Length: 368)
Name: NF16798_low_30
Description: NF16798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16798_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 23 - 362
Target Start/End: Original strand, 17913944 - 17914276
Alignment:
| Q |
23 |
aaactttgaaaaccctaatcatatatataccttccttattcgcgcttctctcttactctcttcttcatagcaaattctcccttctcctagttaatccctc |
122 |
Q |
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| T |
17913944 |
aaactttgaaaaccctaatcatata----ccttccttgttcgcgcttctctcttactctcgtc---atagcaaattctcccttctcctagttaatccctc |
17914036 |
T |
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| Q |
123 |
cgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaactacattctcatgtttac |
222 |
Q |
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| T |
17914037 |
cgccatgtctcctcagcaacctatccgtgttgatccaaaaatctggcagtgctgcgccggcgctgccgttaaaattccaaaactaaattctcatgtttac |
17914136 |
T |
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| Q |
223 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttcccgtccattcattctctgcacagtct |
322 |
Q |
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| T |
17914137 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttcccgtcaattcattccctgcaccgtct |
17914236 |
T |
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| Q |
323 |
ccgcggttgatctactcgctgaccgttgtaccgatgaagt |
362 |
Q |
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| T |
17914237 |
ccacggttaatctactcgctgaccctgttaccgatgaagt |
17914276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 106 - 362
Target Start/End: Complemental strand, 17977139 - 17976886
Alignment:
| Q |
106 |
ctcctagttaatccctccgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaac |
205 |
Q |
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||||| ||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| || ||| | | |||||||||||||||| |
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| T |
17977139 |
ctccttgttaatctctccgccatgtcttctcagcaacg---ccgtgttgatcagaaaatctggcagtgctgtgcaggcagttccgttaaaattccaaaac |
17977043 |
T |
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| Q |
206 |
tacattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttcccgtccatt |
305 |
Q |
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| T |
17977042 |
tatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttcccgtccatt |
17976943 |
T |
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| Q |
306 |
cattctctgcacagtctccgcggttgatctactcgctgaccgttgtaccgatgaagt |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17976942 |
cattctctgcacagtctccgcggttgatctactcgctgacctttgtaccgatgaagt |
17976886 |
T |
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